Rh2DG474900

Acyl carrier protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0013707
Physical Location & Seq
Forward (+)
68751908 .. 68754093
2186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG474900.1

Sequence Viewer

Length: 450 bp
ATGGCTTCTTTTGTTTCAACTTCCCCAATCCCTGTGGCCACTCTGCCTTACACTGCTAAGGCGACAGTTTGCCAAATCAACGGCTTCTCTAGCATTGGAGGTCCAGTGGCTAGAGGGCTAAGAATTATGCCAAAGATCAAGATCACCAAGGCAGCAGAAAGATCATTTCCAGTCCCTAGTTGCTTGAAGACCACAATCTCATGTTCCATCGCTCAACCGGAAACTCTCCAAACTGTTCAAAGCACTATTGCCAAGCAACTATCCGTTGATGAAAGCACCGTCACTCCTCAGACCAAGTTCGCCGATTTGGGGGCAGATTCTCTAGACACTGTTGAAATTATGATGGCTTTGGAGGAGAAGTTTGGTGTGTCCATCGGAGAAGGGGGAGCTGAGAATATCGCTACCGTTCAAGATGCTGCTGATCTGATTGAGAAAGTGAAATCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP-binding

Protein Analysis

149

Amino Acids

15.58

Weight (kDa)

5.14

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP-binding PF00550 77 - 143 2.7e-12 Phosphopantetheine attachment site
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 309
AgsI TTSAA 5 cut(s) 18, 187, 239, 335, 410
AluBI AGCT 1 cut(s) 389
AluI AGCT 1 cut(s) 389
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 2 cut(s) 152, 416
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 136
AvaII GGWCC 1 cut(s) 101
BalI TGGCCA 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 194
BbvI GCAGC 2 cut(s) 164, 403
BccI CCATC 3 cut(s) 215, 337, 380
BceAI ACGGC 1 cut(s) 97
BfaI CTAG 4 cut(s) 90, 111, 177, 323
BisI GCNGC 2 cut(s) 153, 417
BlsI GCNGC 2 cut(s) 154, 418
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BmsI GCATC 1 cut(s) 403
BpiI GAAGAC 1 cut(s) 194
Bpu10I CCTNAGC 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 217
BsaXI ACNNNNNCTCC 6 cut(s) 90, 120, 268, 298, 344, 374
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse1I ACTGG 2 cut(s) 104, 170
Bse8I GATNNNNATC 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 147
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 309
BseMII CTCAG 2 cut(s) 302, 381
BseNI ACTGG 2 cut(s) 104, 170
BseRI GAGGAG 2 cut(s) 276, 368
BseXI GCAGC 2 cut(s) 164, 403
BshFI GGCC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 218
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 309
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 1 cut(s) 38
Bsp143I GATC 4 cut(s) 135, 141, 161, 421
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 2 cut(s) 301, 382
BsrI ACTGG 2 cut(s) 104, 170
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 4 cut(s) 135, 141, 161, 421
BssT1I CCWWGG 1 cut(s) 147
Bst4CI ACNGT 5 cut(s) 67, 235, 280, 331, 406
BstDEI CTNAG 4 cut(s) 57, 119, 288, 390
BstKTI GATC 4 cut(s) 138, 144, 164, 424
BstMBI GATC 4 cut(s) 135, 141, 161, 421
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 164, 403
BstV2I GAAGAC 1 cut(s) 194
BsuRI GGCC 1 cut(s) 38
BtgZI GCGATG 1 cut(s) 193
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 3 cut(s) 51, 111, 327
Cfr13I GGNCC 1 cut(s) 101
CspCI CAANNNNNGTGG 2 cut(s) 15, 50
CviAII CATG 2 cut(s) 201, 447
CviJI RGCY 7 cut(s) 5, 38, 84, 110, 118, 347, 389
CviKI_1 RGCY 7 cut(s) 5, 38, 84, 110, 118, 347, 389
DdeI CTNAG 4 cut(s) 57, 119, 288, 390
DpnI GATC 4 cut(s) 137, 143, 163, 423
DpnII GATC 4 cut(s) 135, 141, 161, 421
EaeI YGGCCR 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 2 cut(s) 204, 450
FaiI YATR 4 cut(s) 128, 202, 341, 448
FaqI GGGAC 1 cut(s) 158
FatI CATG 2 cut(s) 200, 446
Fnu4HI GCNGC 2 cut(s) 153, 417
Fsp4HI GCNGC 2 cut(s) 153, 417
FspBI CTAG 4 cut(s) 90, 111, 177, 323
GluI GCNGC 2 cut(s) 153, 417
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 218
Hin1II CATG 2 cut(s) 204, 450
HinfI GANTC 1 cut(s) 317
HpaII CCGG 1 cut(s) 218
HphI GGTGA 1 cut(s) 136
Hpy188I TCNGA 3 cut(s) 291, 377, 426
Hpy188III TCNNGA 3 cut(s) 139, 323, 410
HpyAV CCTTC 1 cut(s) 374
HpyCH4III ACNGT 5 cut(s) 67, 235, 280, 331, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 4 cut(s) 57, 119, 288, 390
Hsp92II CATG 2 cut(s) 204, 450
Kzo9I GATC 4 cut(s) 135, 141, 161, 421
LmnI GCTCC 1 cut(s) 386
LpnPI CCDG 4 cut(s) 45, 117, 183, 231
Lsp1109I GCAGC 2 cut(s) 164, 403
LweI GCATC 1 cut(s) 403
MaeI CTAG 4 cut(s) 90, 111, 177, 323
MaeIII GTNAC 1 cut(s) 280
MalI GATC 4 cut(s) 137, 143, 163, 423
MboI GATC 4 cut(s) 135, 141, 161, 421
MboII GAAGA 1 cut(s) 199
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 2 cut(s) 123, 336
MluNI TGGCCA 1 cut(s) 38
MnlI CCTC 4 cut(s) 92, 107, 297, 346
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
Msp20I TGGCCA 1 cut(s) 38
MspI CCGG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 90
NdeII GATC 4 cut(s) 135, 141, 161, 421
NlaIII CATG 2 cut(s) 204, 450
NmuCI GTSAC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 317
PkrI GCNGC 2 cut(s) 154, 418
PspPI GGNCC 1 cut(s) 101
SatI GCNGC 2 cut(s) 153, 417
Sau3AI GATC 4 cut(s) 135, 141, 161, 421
Sau96I GGNCC 1 cut(s) 101
SetI ASST 2 cut(s) 103, 391
SfaNI GCATC 1 cut(s) 403
SinI GGWCC 1 cut(s) 101
Sse9I AATT 2 cut(s) 123, 336
SspMI CTAG 4 cut(s) 90, 111, 177, 323
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 5 cut(s) 67, 235, 280, 331, 406
TasI AATT 2 cut(s) 123, 336
TfiI GAWTC 1 cut(s) 317
TscAI CASTG 3 cut(s) 58, 111, 334
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 2 cut(s) 152, 416
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 285
TspGWI ACGGA 1 cut(s) 253
TspRI CASTG 3 cut(s) 58, 111, 334
VpaK11BI GGWCC 1 cut(s) 101
XbaI TCTAGA 1 cut(s) 322
XspI CTAG 4 cut(s) 90, 111, 177, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.