Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0015681

Physical Location & Seq

Genomic Coordinates Forward (+)

5803242 .. 5811710

Gene Structure 8469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAGAGGTGGGTTGTGGACATATCGGAGTGGGACCCATCTCCCGAAGACCTGACCTTTTCCCTCTCTCTTCTTCCTCCTTCCGACCAATCCTCTGTCACCAGATTTGTGCGTGTGGAAGACAGGAAACGGGCGCTTGTGAGCCGGTTGCTTCAGTATGCTCTTGTACTCGAGGTCCTCGCAATTCCATATCATCAACTTGTCATTAATCGCACCTTGGAAGGCAAACCGTATCTGGAATGTGGGGATATCTGTTTGGATTTTCCCAATTTCAATTTCAATGTCTCGCATCATGGTGACTATGTGGCTATAGCATCTGAACCTTTATGCCTTGTGGGGGTTGACATTGTCTCCATAGTCATTCCTCAGGCTGAGACAGTTCCAGAATTCCTTCAAAGCTTCTCCTCCTACTTTTCAAGTTTTGAATGGCATAACATTTGCACTGCTGGCACAACCCATGATATGCTGATCGAGTTTTACAGATATTGGTGTCTGAAAGAAGCTTTTGTCAAAGCAACTGGAAGTGGACTGGTGGACAATTTGTACAAAGTGGAATTTCATCACAGTTGCTGGGAAAACATTTCTGTTAACATTGAGGGGAAGGCTACGAGGGAATGGCGGTTTTGGCTTCTTGAGTTGGGAAAGAATCATTTGGTATCGGTTGCAAGGGGTCATCCAAAATTAGCTTCTGCGAGTTACAAGAGAACATTAAGACAAACAGAGTTTGATGAAAAGGAATATCTTGCAGCTCTTCATCTTCCAAATGTAGGATTTGTCTCAAGAACTGTAGAACAACTAATTTCCAGTTTCACACAAAGAACCAGTACAGCACACCGAGAAGTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006553 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008897 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0015939 GO:0016053 GO:0016740 GO:0016772 GO:0016780 GO:0019752 GO:0019878 GO:0032787 GO:0034641 GO:0043167 GO:0043169 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0051186 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00770 map00770

Pfam Domains

Protein Families

ACPS

Protein Analysis

283

Amino Acids

32.43

Weight (kDa)

5.66

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AASDHPPT_N	PF22624	10 - 108	5.6e-34	4'-phosphopantetheinyl transferase, N-terminal
ACPS	PF01648	112 - 221	9.4e-15	4'-phosphopantetheinyl transferase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05530
malus_domestica	MD02G1257000.v1.1
prunus_persica	Prupe.2G075500_v2.0.a1 Prupe.2G075500_v2.0.a1
pyrus_communis	pycom02g21730 pycom02g21770
rosa_chinensis	RchiOBHm_Chr1g0332361
rosa_laevigata	RLG00000029676
rosa_multiflora	Rmu_sc0003422.1_g000008
rosa_roxburghii	Rroxscaffold_4G00318260
rosa_rugosa	Rorug01G0100200
rosa_samantha	Rh1AG124100 Rh1BG094700 Rh1CG118100 Rh1DG129300
rosa_wichuraiana	Rw1G010100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	619
AcsI	RAATTY	2 cut(s)	386, 554
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	3 cut(s)	168, 545, 826
AfiI	CCNNNNNNNGG	2 cut(s)	337, 767
AgsI	TTSAA	5 cut(s)	274, 280, 395, 417, 425
AjuI	GAANNNNNNNTTGG	4 cut(s)	260, 292, 670, 702
AluBI	AGCT	4 cut(s)	399, 503, 686, 749
AluI	AGCT	4 cut(s)	399, 503, 686, 749
Alw26I	GTCTC	4 cut(s)	289, 355, 368, 781
AlwNI	CAGNNNCTG	1 cut(s)	570
Ama87I	CYCGRG	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	746
ApoI	RAATTY	2 cut(s)	386, 554
AseI	ATTAAT	1 cut(s)	207
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	2 cut(s)	34, 175
AsuHPI	GGTGA	2 cut(s)	91, 308
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	2 cut(s)	34, 175
AxyI	CCTNAGG	1 cut(s)	366
BbsI	GAAGAC	2 cut(s)	54, 126
BbvI	GCAGC	1 cut(s)	758
BccI	CCATC	1 cut(s)	46
BcoDI	GTCTC	4 cut(s)	289, 355, 368, 781
BfmI	CTRYAG	2 cut(s)	309, 786
BfoI	RGCGCY	1 cut(s)	137
BisI	GCNGC	1 cut(s)	747
BlsI	GCNGC	1 cut(s)	748
Bme18I	GGWCC	2 cut(s)	34, 175
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	34, 175
BmiI	GGNNCC	2 cut(s)	35, 36
BmsI	GCATC	2 cut(s)	298, 323
BpiI	GAAGAC	2 cut(s)	54, 126
BpuEI	CTTGAG	2 cut(s)	653, 763
BsaJI	CCNNGG	1 cut(s)	216
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 767
Bse118I	RCCGGY	1 cut(s)	144
Bse1I	ACTGG	4 cut(s)	523, 534, 804, 822
Bse21I	CCTNAGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	673
BseLI	CCNNNNNNNGG	2 cut(s)	337, 767
BseMII	CTCAG	2 cut(s)	363, 380
BseNI	ACTGG	4 cut(s)	523, 534, 804, 822
BseRI	GAGGAG	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	758
BseYI	CCCAGC	1 cut(s)	570
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	145
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	337, 767
BsmAI	GTCTC	4 cut(s)	289, 355, 368, 781
BsmFI	GGGAC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	170
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	1 cut(s)	468
BspACI	CCGC	1 cut(s)	619
BspCNI	CTCAG	2 cut(s)	364, 379
BspLI	GGNNCC	2 cut(s)	35, 36
BspQI	GCTCTTC	1 cut(s)	756
BsrFI	RCCGGY	1 cut(s)	144
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	4 cut(s)	523, 534, 804, 822
BssAI	RCCGGY	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	216
Bst4CI	ACNGT	4 cut(s)	231, 379, 566, 787
Bst6I	CTCTTC	2 cut(s)	75, 756
BstAUI	TGTACA	1 cut(s)	543
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	2 cut(s)	366, 372
BstF5I	GGATG	1 cut(s)	673
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	1 cut(s)	471
BstMAI	GTCTC	4 cut(s)	289, 355, 368, 781
BstMBI	GATC	1 cut(s)	468
BstMWI	GCNNNNNNNGC	2 cut(s)	447, 625
BstSFI	CTRYAG	2 cut(s)	309, 786
BstV1I	GCAGC	1 cut(s)	758
BstV2I	GAAGAC	2 cut(s)	54, 126
Bsu36I	CCTNAGG	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	673
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	1 cut(s)	448
CaiI	CAGNNNCTG	1 cut(s)	570
CfoI	GCGC	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	144
Cfr13I	GGNCC	2 cut(s)	34, 175
Csp6I	GTAC	3 cut(s)	167, 544, 825
CviAII	CATG	2 cut(s)	293, 458
CviJI	RGCY	9 cut(s)	144, 308, 371, 399, 503, 605, 628, 686, 749
CviKI_1	RGCY	9 cut(s)	144, 308, 371, 399, 503, 605, 628, 686, 749
CviQI	GTAC	3 cut(s)	167, 544, 825
DdeI	CTNAG	2 cut(s)	366, 372
DpnI	GATC	1 cut(s)	470
DpnII	GATC	1 cut(s)	468
Eam1104I	CTCTTC	2 cut(s)	75, 756
EarI	CTCTTC	2 cut(s)	75, 756
Eco130I	CCWWGG	1 cut(s)	216
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	2 cut(s)	34, 175
Eco57I	CTGAAG	1 cut(s)	137
Eco81I	CCTNAGG	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	170
EcoO109I	RGGNCCY	2 cut(s)	34, 175
EcoRI	GAATTC	1 cut(s)	386
EcoRV	GATATC	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	296, 461
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	2 cut(s)	292, 457
Fnu4HI	GCNGC	1 cut(s)	747
FokI	GGATG	1 cut(s)	660
Fsp4HI	GCNGC	1 cut(s)	747
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	747
GsaI	CCCAGC	1 cut(s)	574
HaeII	RGCGCY	1 cut(s)	137
HapII	CCGG	1 cut(s)	145
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	2 cut(s)	296, 461
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HincII	GTYRAC	2 cut(s)	343, 589
HindII	GTYRAC	2 cut(s)	343, 589
HindIII	AAGCTT	2 cut(s)	397, 501
HinfI	GANTC	1 cut(s)	646
HpaI	GTTAAC	1 cut(s)	589
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	2 cut(s)	91, 308
Hpy166II	GTNNAC	5 cut(s)	19, 343, 527, 535, 589
Hpy188I	TCNGA	4 cut(s)	28, 85, 319, 495
Hpy188III	TCNNGA	5 cut(s)	44, 236, 383, 632, 780
Hpy8I	GTNNAC	5 cut(s)	19, 343, 527, 535, 589
HpyAV	CCTTC	4 cut(s)	90, 215, 401, 595
HpyCH4III	ACNGT	4 cut(s)	231, 379, 566, 787
HpyCH4V	TGCA	3 cut(s)	441, 665, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	447, 625
HpyF3I	CTNAG	2 cut(s)	366, 372
Hsp92II	CATG	2 cut(s)	296, 461
HspAI	GCGC	1 cut(s)	134
KflI	GGGWCCC	1 cut(s)	34
KspAI	GTTAAC	1 cut(s)	589
Kzo9I	GATC	1 cut(s)	468
LguI	GCTCTTC	1 cut(s)	756
Lsp1109I	GCAGC	1 cut(s)	758
LweI	GCATC	2 cut(s)	298, 323
MaeIII	GTNAC	3 cut(s)	97, 296, 695
MalI	GATC	1 cut(s)	470
MboI	GATC	1 cut(s)	468
MboII	GAAGA	6 cut(s)	59, 62, 65, 131, 743, 749
MluCI	AATT	8 cut(s)	183, 268, 274, 386, 538, 554, 680, 798
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	9 cut(s)	74, 87, 103, 166, 188, 375, 415, 589, 603
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	4 cut(s)	207, 588, 710, 847
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	2 cut(s)	447, 625
NdeII	GATC	1 cut(s)	468
NlaIII	CATG	2 cut(s)	296, 461
NlaIV	GGNNCC	2 cut(s)	35, 36
NmuCI	GTSAC	2 cut(s)	97, 296
PaeR7I	CTCGAG	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	756
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	646
PflFI	GACNNNGTC	1 cut(s)	347
PkrI	GCNGC	1 cut(s)	748
PpuMI	RGGWCCY	2 cut(s)	34, 175
PshBI	ATTAAT	1 cut(s)	207
Psp5II	RGGWCCY	2 cut(s)	34, 175
PspFI	CCCAGC	1 cut(s)	570
PspN4I	GGNNCC	2 cut(s)	35, 36
PspPI	GGNCC	2 cut(s)	34, 175
PspPPI	RGGWCCY	2 cut(s)	34, 175
PspXI	VCTCGAGB	1 cut(s)	170
PstNI	CAGNNNCTG	1 cut(s)	570
PsyI	GACNNNGTC	1 cut(s)	347
RsaI	GTAC	3 cut(s)	168, 545, 826
RsaNI	GTAC	3 cut(s)	167, 544, 825
RseI	CAYNNNNRTG	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	756
SaqAI	TTAA	4 cut(s)	207, 588, 710, 847
SatI	GCNGC	1 cut(s)	747
Sau3AI	GATC	1 cut(s)	468
Sau96I	GGNCC	2 cut(s)	34, 175
SfaNI	GCATC	2 cut(s)	298, 323
SfcI	CTRYAG	2 cut(s)	309, 786
Sfr274I	CTCGAG	1 cut(s)	170
SinI	GGWCC	2 cut(s)	34, 175
SlaI	CTCGAG	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	3 cut(s)	170, 632, 778
SmoI	CTYRAG	3 cut(s)	170, 632, 778
Sse9I	AATT	8 cut(s)	183, 268, 274, 386, 538, 554, 680, 798
SsiI	CCGC	1 cut(s)	619
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	4 cut(s)	231, 379, 566, 787
TaqI	TCGA	2 cut(s)	171, 471
TasI	AATT	8 cut(s)	183, 268, 274, 386, 538, 554, 680, 798
TatI	WGTACW	3 cut(s)	166, 543, 824
TfiI	GAWTC	1 cut(s)	646
Tru1I	TTAA	4 cut(s)	207, 588, 710, 847
Tru9I	TTAA	4 cut(s)	207, 588, 710, 847
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	2 cut(s)	97, 296
TseI	GCWGC	1 cut(s)	746
Tsp45I	GTSAC	2 cut(s)	97, 296
TspDTI	ATGAA	3 cut(s)	548, 743, 744
TspRI	CASTG	1 cut(s)	448
Tth111I	GACNNNGTC	1 cut(s)	347
VpaK11BI	GGWCC	2 cut(s)	34, 175
VspI	ATTAAT	1 cut(s)	207
XapI	RAATTY	2 cut(s)	386, 554
XhoI	CTCGAG	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.