Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0015681

Physical Location & Seq

Genomic Coordinates Reverse (-)

19999574 .. 20002162

Gene Structure 2589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g21770.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTATTGTAACTATATAGTCCCAAGAGCCATTTATAACGCCTCAAATCAGGAGGAGGTAAACCGTAGTCGACCCAAAATATTTGTGCGCAACCGTCCACAGGAGACGAAAGAAAGAAACCGAAACAAGGAAATAAAGCATCTTTTCTTCAACTGTGCGTGTGCCTGTTTGGTACGAATGGAGAGAGGGGTGCAGAGATGGGTTGTGGACATATCAGAGTGGGACCCATCTCCCCATGATTTCTCCTCTGCTCTCTCTCTCCTCCCTCCACCTGAGCAATCATCTGTCACCAGATTTGTACAGATGGAAGACCGGAAGCGGGCGCTTGTGAGCCGCTTGCTTCAGTATGCTCTTGCACATCAAGTGTTGGCAATTCCGTTTCATGAAATTATCATCGACCGCACCTTGGAAGGCAAACCGTATCTGGAATGTGGCCACGCTTGCGTGGATTTTCCCAATTTTAACTTCAATGCATCGCATCATGGCGACTATGTTGCTATAGCATCCGAACCTTTGTGCCTGGTGGGGGTGGACGTTGTTTCGGTAGTCATTCCGCAGGAAGAGACGCCTATAGAGTTTGTTAAAAACTTCTCCTCTTGCTTTTCAAGTTTTGAATGGGATAATATACTCAACGCTGGAACCTCGGATGATATTCTGATTGAGTTTTACAGATATTGGTGTTTGAAAGAAGCTTATGTCAAAGCAATTGGGAGCGGAGTGGCATATGGTTTGGACAAAGTGGAATTTCATCACAGTTGCTGGACAAATATTTCTGTACACGTTGAGGGGAAGCTTATGAGAGAATGGCGATTTTGGCTTCTCGAGCTAGGGAAGGGACATTTGGTCTCCATTGCTAGGGGTCATCCAAGATCAGCTACTGAGAGTTACATGAGAACATTAAAACAGGTAGAGTTCGGCGAGGAGGAATATCAAACAGCTCTTAATCTTCCAAATGCTGGATTTGTCTCGAGAACGGTAGAGCAACTCGTTACAGTTTTACAGAAAGCTAGGGACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006553 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008897 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0015939 GO:0016053 GO:0016740 GO:0016772 GO:0016780 GO:0019752 GO:0019878 GO:0032787 GO:0034641 GO:0043167 GO:0043169 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0051186 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00770 map00770

Pfam Domains

Protein Families

ACPS

Protein Analysis

340

Amino Acids

39.04

Weight (kDa)

6.24

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05530
malus_domestica	MD02G1257000.v1.1
prunus_persica	Prupe.2G075500_v2.0.a1 Prupe.2G075500_v2.0.a1
pyrus_communis	pycom02g21730 pycom02g21770
rosa_chinensis	RchiOBHm_Chr1g0332361
rosa_laevigata	RLG00000029676
rosa_multiflora	Rmu_sc0003422.1_g000008
rosa_roxburghii	Rroxscaffold_4G00318260
rosa_rugosa	Rorug01G0100200
rosa_samantha	Rh1AG124100 Rh1BG094700 Rh1CG118100 Rh1DG129300
rosa_wichuraiana	Rw1G010100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	36
Acc16I	TGCGCA	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	956
AccBSI	CCGCTC	1 cut(s)	714
AccI	GTMKAC	1 cut(s)	70
AciI	CCGC	5 cut(s)	319, 334, 400, 554, 714
AcoI	YGGCCR	1 cut(s)	433
AcsI	RAATTY	1 cut(s)	743
AcuI	CTGAAG	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	566
AfaI	GTAC	3 cut(s)	174, 300, 777
AfiI	CCNNNNNNNGG	7 cut(s)	100, 127, 319, 406, 526, 855, 956
AflIII	ACRYGT	1 cut(s)	778
AgsI	TTSAA	5 cut(s)	151, 469, 606, 614, 685
AhdI	GACNNNNNGTC	1 cut(s)	842
AjnI	CCWGG	1 cut(s)	519
AjuI	GAANNNNNNNTTGG	4 cut(s)	449, 481, 824, 856
AluBI	AGCT	6 cut(s)	692, 793, 826, 875, 938, 1007
AluI	AGCT	6 cut(s)	692, 793, 826, 875, 938, 1007
Alw26I	GTCTC	4 cut(s)	98, 557, 850, 970
AlwNI	CAGNNNCTG	2 cut(s)	759, 878
Ama87I	CYCGRG	2 cut(s)	821, 967
AoxI	GGCC	1 cut(s)	433
ApoI	RAATTY	1 cut(s)	743
AspLEI	GCGC	2 cut(s)	90, 325
AspS9I	GGNCC	2 cut(s)	223, 1012
AsuHPI	GGTGA	1 cut(s)	280
AvaI	CYCGRG	2 cut(s)	821, 967
AvaII	GGWCC	2 cut(s)	223, 1012
BalI	TGGCCA	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	315
BccI	CCATC	3 cut(s)	192, 235, 298
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciT130I	CCWGG	1 cut(s)	521
BcoDI	GTCTC	4 cut(s)	98, 557, 850, 970
BfaI	CTAG	3 cut(s)	827, 855, 1008
BfmI	CTRYAG	2 cut(s)	498, 570
BfoI	RGCGCY	1 cut(s)	326
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	521
Bme18I	GGWCC	2 cut(s)	223, 1012
BmeRI	GACNNNNNGTC	1 cut(s)	842
BmeT110I	CYCGRG	2 cut(s)	821, 967
BmgT120I	GGNCC	2 cut(s)	223, 1012
BmiI	GGNNCC	4 cut(s)	224, 225, 640, 1013
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	4 cut(s)	148, 482, 487, 512
BpiI	GAAGAC	1 cut(s)	315
Bpu10I	CCTNAGC	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	566
BsaI	GGTCTC	1 cut(s)	850
BsaJI	CCNNGG	2 cut(s)	405, 642
BsaWI	WCCGGW	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	7 cut(s)	100, 127, 319, 406, 526, 855, 956
Bse3DI	GCAATG	1 cut(s)	849
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	2 cut(s)	405, 642
BseGI	GGATG	3 cut(s)	503, 652, 862
BseLI	CCNNNNNNNGG	7 cut(s)	100, 127, 319, 406, 526, 855, 956
BseMI	GCAATG	1 cut(s)	849
BseMII	CTCAG	2 cut(s)	264, 870
BseRI	GAGGAG	5 cut(s)	68, 235, 251, 583, 935
BsgI	GTGCAG	1 cut(s)	212
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	1 cut(s)	435
BsiEI	CGRYCG	1 cut(s)	400
BsiHKCI	CYCGRG	2 cut(s)	821, 967
BsiSI	CCGG	1 cut(s)	313
BslFI	GGGAC	3 cut(s)	5, 236, 849
BslI	CCNNNNNNNGG	7 cut(s)	100, 127, 319, 406, 526, 855, 956
BsmAI	GTCTC	4 cut(s)	98, 557, 850, 970
BsmBI	CGTCTC	2 cut(s)	98, 557
BsmFI	GGGAC	3 cut(s)	5, 236, 849
BsnI	GGCC	1 cut(s)	435
Bso31I	GGTCTC	1 cut(s)	850
BsoBI	CYCGRG	2 cut(s)	821, 967
Bsp1407I	TGTACA	2 cut(s)	298, 775
Bsp143I	GATC	1 cut(s)	869
BspACI	CCGC	5 cut(s)	319, 334, 400, 554, 714
BspANI	GGCC	1 cut(s)	435
BspCNI	CTCAG	2 cut(s)	265, 871
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	4 cut(s)	224, 225, 640, 1013
BspTNI	GGTCTC	1 cut(s)	850
BsrBI	CCGCTC	1 cut(s)	714
BsrDI	GCAATG	1 cut(s)	849
BsrGI	TGTACA	2 cut(s)	298, 775
BssECI	CCNNGG	2 cut(s)	405, 642
BssMI	GATC	1 cut(s)	869
BssNI	GRCGYC	1 cut(s)	566
BssT1I	CCWWGG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	7 cut(s)	65, 95, 155, 420, 755, 976, 994
Bst6I	CTCTTC	1 cut(s)	555
BstACI	GRCGYC	1 cut(s)	566
BstAUI	TGTACA	2 cut(s)	298, 775
BstC8I	GCNNGC	3 cut(s)	321, 338, 442
BstDEI	CTNAG	2 cut(s)	273, 879
BstF5I	GGATG	3 cut(s)	503, 652, 862
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	2 cut(s)	90, 325
BstKTI	GATC	1 cut(s)	872
BstMAI	GTCTC	4 cut(s)	98, 557, 850, 970
BstMBI	GATC	1 cut(s)	869
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	3 cut(s)	441, 814, 823
BstNI	CCWGG	1 cut(s)	521
BstSCI	CCNGG	1 cut(s)	519
BstSFI	CTRYAG	2 cut(s)	498, 570
BstV2I	GAAGAC	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	435
BtgZI	GCGATG	1 cut(s)	459
BtsCI	GGATG	3 cut(s)	503, 652, 862
Cac8I	GCNNGC	3 cut(s)	321, 338, 442
CaiI	CAGNNNCTG	2 cut(s)	759, 878
CciI	TCATGA	1 cut(s)	382
CfoI	GCGC	2 cut(s)	90, 325
Cfr13I	GGNCC	2 cut(s)	223, 1012
CseI	GACGC	1 cut(s)	574
Csp6I	GTAC	3 cut(s)	173, 299, 776
CviAII	CATG	4 cut(s)	236, 383, 482, 889
CviQI	GTAC	3 cut(s)	173, 299, 776
DdeI	CTNAG	2 cut(s)	273, 879
DpnI	GATC	1 cut(s)	871
DpnII	GATC	1 cut(s)	869
DriI	GACNNNNNGTC	1 cut(s)	842
EaeI	YGGCCR	1 cut(s)	433
Eam1104I	CTCTTC	1 cut(s)	555
Eam1105I	GACNNNNNGTC	1 cut(s)	842
EarI	CTCTTC	1 cut(s)	555
Eco130I	CCWWGG	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	850
Eco47I	GGWCC	2 cut(s)	223, 1012
Eco57I	CTGAAG	1 cut(s)	326
Eco88I	CYCGRG	2 cut(s)	821, 967
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	405
EcoT22I	ATGCAT	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	405
Esp3I	CGTCTC	2 cut(s)	98, 557
FaeI	CATG	4 cut(s)	239, 386, 485, 892
FaqI	GGGAC	3 cut(s)	5, 236, 849
FatI	CATG	4 cut(s)	235, 382, 481, 888
FauI	CCCGC	1 cut(s)	312
FauNDI	CATATG	1 cut(s)	724
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	334
FokI	GGATG	3 cut(s)	490, 659, 849
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	3 cut(s)	827, 855, 1008
FspI	TGCGCA	1 cut(s)	89
GlaI	GCGC	2 cut(s)	89, 324
GluI	GCNGC	1 cut(s)	334
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	435
HapII	CCGG	1 cut(s)	313
HgaI	GACGC	1 cut(s)	574
HhaI	GCGC	2 cut(s)	90, 325
Hin1I	GRCGYC	1 cut(s)	566
Hin1II	CATG	4 cut(s)	239, 386, 485, 892
Hin6I	GCGC	2 cut(s)	88, 323
HinP1I	GCGC	2 cut(s)	88, 323
HincII	GTYRAC	1 cut(s)	71
HindII	GTYRAC	1 cut(s)	71
HindIII	AAGCTT	2 cut(s)	690, 791
HpaII	CCGG	1 cut(s)	313
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	6 cut(s)	61, 71, 98, 208, 532, 778
Hpy188I	TCNGA	4 cut(s)	217, 508, 646, 657
Hpy188III	TCNNGA	6 cut(s)	50, 383, 425, 821, 967, 969
Hpy8I	GTNNAC	6 cut(s)	61, 71, 98, 208, 532, 778
HpyAV	CCTTC	2 cut(s)	404, 826
HpyCH4III	ACNGT	7 cut(s)	65, 95, 155, 420, 755, 976, 994
HpyCH4IV	ACGT	2 cut(s)	534, 780
HpyCH4V	TGCA	3 cut(s)	193, 356, 473
HpyF10VI	GCNNNNNNNGC	3 cut(s)	441, 814, 823
HpyF3I	CTNAG	2 cut(s)	273, 879
HpySE526I	ACGT	2 cut(s)	534, 780
Hsp92I	GRCGYC	1 cut(s)	566
Hsp92II	CATG	4 cut(s)	239, 386, 485, 892
HspAI	GCGC	2 cut(s)	88, 323
KflI	GGGWCCC	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	869
LmnI	GCTCC	1 cut(s)	711
LweI	GCATC	4 cut(s)	148, 482, 487, 512
MaeI	CTAG	3 cut(s)	827, 855, 1008
MaeII	ACGT	2 cut(s)	534, 780
MaeIII	GTNAC	4 cut(s)	8, 286, 884, 988
MalI	GATC	1 cut(s)	871
MbiI	CCGCTC	1 cut(s)	714
MboI	GATC	1 cut(s)	869
MboII	GAAGA	4 cut(s)	139, 320, 572, 938
MfeI	CAATTG	1 cut(s)	705
MlsI	TGGCCA	1 cut(s)	435
MluCI	AATT	5 cut(s)	372, 387, 457, 705, 743
MluNI	TGGCCA	1 cut(s)	435
Mox20I	TGGCCA	1 cut(s)	435
Mph1103I	ATGCAT	1 cut(s)	475
MscI	TGGCCA	1 cut(s)	435
MseI	TTAA	4 cut(s)	462, 582, 899, 942
Msp20I	TGGCCA	1 cut(s)	435
MspI	CCGG	1 cut(s)	313
MspR9I	CCNGG	1 cut(s)	521
MunI	CAATTG	1 cut(s)	705
MvaI	CCWGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	3 cut(s)	441, 814, 823
NdeI	CATATG	1 cut(s)	724
NdeII	GATC	1 cut(s)	869
NlaIII	CATG	4 cut(s)	239, 386, 485, 892
NlaIV	GGNNCC	4 cut(s)	224, 225, 640, 1013
NmuCI	GTSAC	1 cut(s)	286
NsbI	TGCGCA	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	475
PaeR7I	CTCGAG	2 cut(s)	821, 967
PagI	TCATGA	1 cut(s)	382
PflMI	CCANNNNNTGG	1 cut(s)	956
PkrI	GCNGC	1 cut(s)	335
PpuMI	RGGWCCY	1 cut(s)	223
PsiI	TTATAA	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	4 cut(s)	224, 225, 640, 1013
PspPI	GGNCC	2 cut(s)	223, 1012
PspPPI	RGGWCCY	1 cut(s)	223
PstNI	CAGNNNCTG	2 cut(s)	759, 878
RsaI	GTAC	3 cut(s)	174, 300, 777
RsaNI	GTAC	3 cut(s)	173, 299, 776
SalI	GTCGAC	1 cut(s)	69
SaqAI	TTAA	4 cut(s)	462, 582, 899, 942
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	1 cut(s)	869
Sau96I	GGNCC	2 cut(s)	223, 1012
ScrFI	CCNGG	1 cut(s)	521
SfaNI	GCATC	4 cut(s)	148, 482, 487, 512
SfcI	CTRYAG	2 cut(s)	498, 570
Sfr274I	CTCGAG	2 cut(s)	821, 967
SinI	GGWCC	2 cut(s)	223, 1012
SlaI	CTCGAG	2 cut(s)	821, 967
SmlI	CTYRAG	2 cut(s)	821, 967
SmoI	CTYRAG	2 cut(s)	821, 967
Sse9I	AATT	5 cut(s)	372, 387, 457, 705, 743
SsiI	CCGC	5 cut(s)	319, 334, 400, 554, 714
SspI	AATATT	2 cut(s)	81, 769
SspMI	CTAG	3 cut(s)	827, 855, 1008
StyD4I	CCNGG	1 cut(s)	519
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	7 cut(s)	65, 95, 155, 420, 755, 976, 994
TaiI	ACGT	2 cut(s)	537, 783
TaqI	TCGA	4 cut(s)	70, 396, 822, 968
TasI	AATT	5 cut(s)	372, 387, 457, 705, 743
TatI	WGTACW	2 cut(s)	298, 775
TauI	GCSGC	1 cut(s)	336
Tru1I	TTAA	4 cut(s)	462, 582, 899, 942
Tru9I	TTAA	4 cut(s)	462, 582, 899, 942
TseFI	GTSAC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	3 cut(s)	371, 399, 737
TspGWI	ACGGA	1 cut(s)	366
Van91I	CCANNNNNTGG	1 cut(s)	956
VpaK11BI	GGWCC	2 cut(s)	223, 1012
XapI	RAATTY	1 cut(s)	743
XhoI	CTCGAG	2 cut(s)	821, 967
XmiI	GTMKAC	1 cut(s)	70
XspI	CTAG	3 cut(s)	827, 855, 1008
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.