Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0015681

Physical Location & Seq

Genomic Coordinates Reverse (-)

30948618 .. 30951550

Gene Structure 2933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1257000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGAAAGAGGGGTGCAGAGATGGGTTGTGGACATATCAGAATGGGACCCTTCTCCCCATGATTTCTCCTCTGCTCTCTCTCTCCTCCCTCCACTTGAGCAATCATCTGTCACCAGATTTGTACAGATGGAAGACCGGAAGCGGGCGCTTGTGAGCCGCTTGCTTCAGTATGCTCTTGCACATCAAGTGTTGGCAATTCCGTTTCATGAAATTATCATCAACCGCACCTTGGAAGGCAAACCGTATCTGGAATGTGGCCACGCTTGCGTGGATTTTCCCAATTTTAACTTCAATGCATCGCATCATGGCGACTATGTTGCTATAGCATCGGAACCTCTGTGCCTGGTGGGGGTGGACATTGTTTCGGTAGTCATTCCGCAGAAAGAGACGCCTATTGAGTTTGTTAAAAACTTCTCCTCATGCTTTTCAAGTTTTGAATGGGATAATATACTCAACGCTGGAACCTCGGATGATATTCTGACTGAGTTTTACAGATATTGGTGTTTGAAAGAAGCTTACGTCAAAGCAATTGGGAGCAGTATAGCATATGGTTTGGACAAAGTGGAATTTCATCACAGTTGCTGGACAAATATTTCTGTAAACATTGAGGGGAAGCTTATGAGAGAATGGCGATTTTGGCTTCGCGAGCTAGGGAACGGACATTTGGTCTCCATTGCTAGGGGTCATCCAAGATCAGCTACTGAGAGTTACATGAGAACATTAAAACAGGCGGAGTTCGGCGAGGAGGAATATCAAACAGCTCTTCATCTTCCAAATGCCGGATTTGTCTCGAGAACGGTAGAGCAACTCGTTACAGTTTTACAGAAAGCTAGGGACCCATTGAACCACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006553 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008897 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0015939 GO:0016053 GO:0016740 GO:0016772 GO:0016780 GO:0019752 GO:0019878 GO:0032787 GO:0034641 GO:0043167 GO:0043169 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0051186 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00770 map00770

Pfam Domains

Protein Families

ACPS

Protein Analysis

285

Amino Acids

32.44

Weight (kDa)

5.73

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AASDHPPT_N	PF22624	14 - 112	9.4e-35	4'-phosphopantetheinyl transferase, N-terminal
ACPS	PF01648	116 - 225	1.6e-15	4'-phosphopantetheinyl transferase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05530
malus_domestica	MD02G1257000.v1.1
prunus_persica	Prupe.2G075500_v2.0.a1 Prupe.2G075500_v2.0.a1
pyrus_communis	pycom02g21730 pycom02g21770
rosa_chinensis	RchiOBHm_Chr1g0332361
rosa_laevigata	RLG00000029676
rosa_multiflora	Rmu_sc0003422.1_g000008
rosa_roxburghii	Rroxscaffold_4G00318260
rosa_rugosa	Rorug01G0100200
rosa_samantha	Rh1AG124100 Rh1BG094700 Rh1CG118100 Rh1DG129300
rosa_wichuraiana	Rw1G010100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	645
AciI	CCGC	5 cut(s)	142, 157, 223, 377, 731
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	1 cut(s)	566
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	389
AfaI	GTAC	1 cut(s)	123
AfiI	CCNNNNNNNGG	5 cut(s)	142, 229, 349, 678, 779
AgsI	TTSAA	5 cut(s)	292, 429, 437, 508, 844
AhdI	GACNNNNNGTC	1 cut(s)	665
AjnI	CCWGG	1 cut(s)	342
AjuI	GAANNNNNNNTTGG	4 cut(s)	272, 304, 647, 679
AluBI	AGCT	6 cut(s)	515, 616, 649, 698, 761, 830
AluI	AGCT	6 cut(s)	515, 616, 649, 698, 761, 830
Alw26I	GTCTC	3 cut(s)	380, 673, 793
AlwNI	CAGNNNCTG	2 cut(s)	582, 701
Ama87I	CYCGRG	1 cut(s)	790
AoxI	GGCC	1 cut(s)	256
ApoI	RAATTY	1 cut(s)	566
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	2 cut(s)	46, 835
AsuHPI	GGTGA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	790
AvaII	GGWCC	2 cut(s)	46, 835
BalI	TGGCCA	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	138
BccI	CCATC	2 cut(s)	15, 121
BcgI	CGANNNNNNTGC	2 cut(s)	299, 333
BciT130I	CCWGG	1 cut(s)	344
BcoDI	GTCTC	3 cut(s)	380, 673, 793
BfaI	CTAG	3 cut(s)	650, 678, 831
BfmI	CTRYAG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	149
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	344
Bme18I	GGWCC	2 cut(s)	46, 835
BmeRI	GACNNNNNGTC	1 cut(s)	665
BmeT110I	CYCGRG	1 cut(s)	790
BmgT120I	GGNCC	2 cut(s)	46, 835
BmiI	GGNNCC	6 cut(s)	47, 48, 333, 463, 836, 837
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	3 cut(s)	305, 310, 335
BpiI	GAAGAC	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	389
BsaI	GGTCTC	1 cut(s)	673
BsaJI	CCNNGG	2 cut(s)	228, 465
BsaWI	WCCGGW	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	5 cut(s)	142, 229, 349, 678, 779
Bse3DI	GCAATG	1 cut(s)	672
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	2 cut(s)	228, 465
BseGI	GGATG	2 cut(s)	475, 685
BseLI	CCNNNNNNNGG	5 cut(s)	142, 229, 349, 678, 779
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	2 cut(s)	474, 693
BseRI	GAGGAG	4 cut(s)	58, 74, 406, 758
BsgI	GTGCAG	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	645
BshFI	GGCC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	790
BsiSI	CCGG	2 cut(s)	136, 780
BslFI	GGGAC	2 cut(s)	59, 848
BslI	CCNNNNNNNGG	5 cut(s)	142, 229, 349, 678, 779
BsmAI	GTCTC	3 cut(s)	380, 673, 793
BsmBI	CGTCTC	1 cut(s)	380
BsmFI	GGGAC	2 cut(s)	59, 848
BsnI	GGCC	1 cut(s)	258
Bso31I	GGTCTC	1 cut(s)	673
BsoBI	CYCGRG	1 cut(s)	790
Bsp1407I	TGTACA	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	692
Bsp68I	TCGCGA	1 cut(s)	645
BspACI	CCGC	5 cut(s)	142, 157, 223, 377, 731
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	2 cut(s)	475, 694
BspFNI	CGCG	1 cut(s)	645
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	6 cut(s)	47, 48, 333, 463, 836, 837
BspQI	GCTCTTC	1 cut(s)	768
BspTNI	GGTCTC	1 cut(s)	673
BsrDI	GCAATG	1 cut(s)	672
BsrGI	TGTACA	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	228, 465
BssMI	GATC	1 cut(s)	692
BssNI	GRCGYC	1 cut(s)	389
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	4 cut(s)	243, 578, 799, 817
Bst6I	CTCTTC	1 cut(s)	768
BstACI	GRCGYC	1 cut(s)	389
BstAUI	TGTACA	1 cut(s)	121
BstC8I	GCNNGC	4 cut(s)	144, 161, 265, 647
BstDEI	CTNAG	2 cut(s)	483, 702
BstF5I	GGATG	2 cut(s)	475, 685
BstFNI	CGCG	1 cut(s)	645
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	1 cut(s)	695
BstMAI	GTCTC	3 cut(s)	380, 673, 793
BstMBI	GATC	1 cut(s)	692
BstMWI	GCNNNNNNNGC	3 cut(s)	264, 637, 646
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	321
BstUI	CGCG	1 cut(s)	645
BstV2I	GAAGAC	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	258
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	475, 685
BtuMI	TCGCGA	1 cut(s)	645
Cac8I	GCNNGC	4 cut(s)	144, 161, 265, 647
CaiI	CAGNNNCTG	2 cut(s)	582, 701
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	46, 835
CseI	GACGC	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	122
CviAII	CATG	5 cut(s)	59, 206, 305, 420, 712
CviJI	RGCY	9 cut(s)	156, 258, 515, 616, 640, 649, 698, 761, 830
CviKI_1	RGCY	9 cut(s)	156, 258, 515, 616, 640, 649, 698, 761, 830
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	2 cut(s)	483, 702
DpnI	GATC	1 cut(s)	694
DpnII	GATC	1 cut(s)	692
DriI	GACNNNNNGTC	1 cut(s)	665
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	768
Eam1105I	GACNNNNNGTC	1 cut(s)	665
EarI	CTCTTC	1 cut(s)	768
EciI	GGCGGA	1 cut(s)	746
Eco130I	CCWWGG	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	673
Eco47I	GGWCC	2 cut(s)	46, 835
Eco57I	CTGAAG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	790
EcoO109I	RGGNCCY	2 cut(s)	46, 835
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	380
FaeI	CATG	5 cut(s)	62, 209, 308, 423, 715
FaqI	GGGAC	2 cut(s)	59, 848
FatI	CATG	5 cut(s)	58, 205, 304, 419, 711
FauI	CCCGC	1 cut(s)	135
FauNDI	CATATG	1 cut(s)	547
Fnu4HI	GCNGC	1 cut(s)	157
FokI	GGATG	2 cut(s)	482, 672
Fsp4HI	GCNGC	1 cut(s)	157
FspBI	CTAG	3 cut(s)	650, 678, 831
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	2 cut(s)	136, 780
HgaI	GACGC	1 cut(s)	397
HhaI	GCGC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	389
Hin1II	CATG	5 cut(s)	62, 209, 308, 423, 715
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HindIII	AAGCTT	2 cut(s)	513, 614
HpaII	CCGG	2 cut(s)	136, 780
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	3 cut(s)	31, 355, 601
Hpy188I	TCNGA	4 cut(s)	40, 331, 469, 480
Hpy188III	TCNNGA	5 cut(s)	206, 248, 644, 790, 792
Hpy8I	GTNNAC	3 cut(s)	31, 355, 601
HpyAV	CCTTC	2 cut(s)	60, 227
HpyCH4III	ACNGT	4 cut(s)	243, 578, 799, 817
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	3 cut(s)	16, 179, 296
HpyF10VI	GCNNNNNNNGC	3 cut(s)	264, 637, 646
HpyF3I	CTNAG	2 cut(s)	483, 702
HpySE526I	ACGT	1 cut(s)	519
Hsp92I	GRCGYC	1 cut(s)	389
Hsp92II	CATG	5 cut(s)	62, 209, 308, 423, 715
HspAI	GCGC	1 cut(s)	146
KflI	GGGWCCC	2 cut(s)	46, 835
Kzo9I	GATC	1 cut(s)	692
LguI	GCTCTTC	1 cut(s)	768
LmnI	GCTCC	1 cut(s)	534
LpnPI	CCDG	9 cut(s)	127, 149, 233, 329, 356, 444, 568, 713, 793
LweI	GCATC	3 cut(s)	305, 310, 335
MaeI	CTAG	3 cut(s)	650, 678, 831
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	3 cut(s)	109, 707, 811
MalI	GATC	1 cut(s)	694
MboI	GATC	1 cut(s)	692
MboII	GAAGA	3 cut(s)	143, 755, 761
MfeI	CAATTG	1 cut(s)	528
MlsI	TGGCCA	1 cut(s)	258
MluCI	AATT	5 cut(s)	195, 210, 280, 528, 566
MluNI	TGGCCA	1 cut(s)	258
MnlI	CCTC	9 cut(s)	79, 95, 99, 345, 427, 475, 601, 736, 739
Mox20I	TGGCCA	1 cut(s)	258
Mph1103I	ATGCAT	1 cut(s)	298
MscI	TGGCCA	1 cut(s)	258
MseI	TTAA	3 cut(s)	285, 405, 722
Msp20I	TGGCCA	1 cut(s)	258
MspI	CCGG	2 cut(s)	136, 780
MspR9I	CCNGG	1 cut(s)	344
MunI	CAATTG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	645
MwoI	GCNNNNNNNGC	3 cut(s)	264, 637, 646
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	1 cut(s)	692
NlaIII	CATG	5 cut(s)	62, 209, 308, 423, 715
NlaIV	GGNNCC	6 cut(s)	47, 48, 333, 463, 836, 837
NmuCI	GTSAC	1 cut(s)	109
NruI	TCGCGA	1 cut(s)	645
NsiI	ATGCAT	1 cut(s)	298
PaeR7I	CTCGAG	1 cut(s)	790
PagI	TCATGA	1 cut(s)	205
PciSI	GCTCTTC	1 cut(s)	768
PkrI	GCNGC	1 cut(s)	158
PpuMI	RGGWCCY	2 cut(s)	46, 835
Psp5II	RGGWCCY	2 cut(s)	46, 835
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	6 cut(s)	47, 48, 333, 463, 836, 837
PspPI	GGNCC	2 cut(s)	46, 835
PspPPI	RGGWCCY	2 cut(s)	46, 835
PstNI	CAGNNNCTG	2 cut(s)	582, 701
RruI	TCGCGA	1 cut(s)	645
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
SapI	GCTCTTC	1 cut(s)	768
SaqAI	TTAA	3 cut(s)	285, 405, 722
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	1 cut(s)	692
Sau96I	GGNCC	2 cut(s)	46, 835
ScrFI	CCNGG	1 cut(s)	344
SfaNI	GCATC	3 cut(s)	305, 310, 335
SfcI	CTRYAG	1 cut(s)	321
Sfr274I	CTCGAG	1 cut(s)	790
SinI	GGWCC	2 cut(s)	46, 835
SlaI	CTCGAG	1 cut(s)	790
SmlI	CTYRAG	2 cut(s)	95, 790
SmoI	CTYRAG	2 cut(s)	95, 790
Sse9I	AATT	5 cut(s)	195, 210, 280, 528, 566
SsiI	CCGC	5 cut(s)	142, 157, 223, 377, 731
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	3 cut(s)	650, 678, 831
StyD4I	CCNGG	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	4 cut(s)	243, 578, 799, 817
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	1 cut(s)	791
TasI	AATT	5 cut(s)	195, 210, 280, 528, 566
TatI	WGTACW	1 cut(s)	121
TauI	GCSGC	1 cut(s)	159
Tru1I	TTAA	3 cut(s)	285, 405, 722
Tru9I	TTAA	3 cut(s)	285, 405, 722
TseFI	GTSAC	1 cut(s)	109
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	4 cut(s)	194, 222, 560, 755
TspGWI	ACGGA	2 cut(s)	189, 672
VpaK11BI	GGWCC	2 cut(s)	46, 835
XapI	RAATTY	1 cut(s)	566
XhoI	CTCGAG	1 cut(s)	790
XspI	CTAG	3 cut(s)	650, 678, 831
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.