Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0015681

Physical Location & Seq

Genomic Coordinates Forward (+)

23126779 .. 23132936

Gene Structure 6158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG124100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTGCCATGTATACTGTGTTCTTTTTCAGGAATGTGATGAAGTTTGCGTGGATTTTCCCAATTTTAATTTCAATGTATCGCATCATGGTGACTATGTGGCTATAGCATCAGAACCTTTATGCCTTGTGGGGGTTGACATTGTTTCCATAGTCATTCCTCAGGATGAGACTGTCATAGAATTCCTTCAAAGCTTCTCCTCATACTTTTCAAGTTTTGAATGGCATAACATTTGCACTGCTGGCACAAACGATGATATGCTGATTGAGTTTTACAGATATTGGTGTCTGAAAGAAGCTTTTGTCAAAGCAATTGGGAGTGGACTGGCATATGATTTGGACAAAGTGGAATTTCATCACAGTTGCTGGGCAAACATTTCTGTTAACATTGAGGGCAAGGCTACAAGAGAGTGGCGCTTTTGGCTTCTAGAGTTGGGAAAGAATCATTTGGTATCCATTGCAAGGGGTCATCCAAGATCAGCTTCTGGGAGTTACATGAGAACATTAAGACGATCGGAGTTTGATGAAAAGGAATATCATGCAGCTCTTCATCTTCCAAATGTAGGGTTTGTCTCGAGAACTGTAGAACAACTAATTCCGGTTTCACACAAAGCCCCTGTACATCACACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006553 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008897 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0015939 GO:0016053 GO:0016740 GO:0016772 GO:0016780 GO:0019752 GO:0019878 GO:0032787 GO:0034641 GO:0043167 GO:0043169 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0051186 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00770 map00770

Pfam Domains

Protein Families

ACPS

Protein Analysis

209

Amino Acids

23.98

Weight (kDa)

5.65

Isoelectric Point (pI)

53.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AASDHPPT_N	PF22624	17 - 39	2.2e-06	4'-phosphopantetheinyl transferase, N-terminal
ACPS	PF01648	43 - 152	1e-15	4'-phosphopantetheinyl transferase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05530
malus_domestica	MD02G1257000.v1.1
prunus_persica	Prupe.2G075500_v2.0.a1 Prupe.2G075500_v2.0.a1
pyrus_communis	pycom02g21730 pycom02g21770
rosa_chinensis	RchiOBHm_Chr1g0332361
rosa_laevigata	RLG00000029676
rosa_multiflora	Rmu_sc0003422.1_g000008
rosa_roxburghii	Rroxscaffold_4G00318260
rosa_rugosa	Rorug01G0100200
rosa_samantha	Rh1AG124100 Rh1BG094700 Rh1CG118100 Rh1DG129300
rosa_wichuraiana	Rw1G010100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	179, 347
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	3 cut(s)	130, 459, 560
AgsI	TTSAA	4 cut(s)	73, 188, 210, 218
AjuI	GAANNNNNNNTTGG	4 cut(s)	53, 85, 463, 495
AluBI	AGCT	4 cut(s)	192, 296, 479, 542
AluI	AGCT	4 cut(s)	192, 296, 479, 542
Alw26I	GTCTC	2 cut(s)	161, 574
AlwNI	CAGNNNCTG	2 cut(s)	363, 482
Ama87I	CYCGRG	1 cut(s)	571
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	2 cut(s)	179, 347
Asp700I	GAANNNNTTC	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	414
AsuHPI	GGTGA	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	571
AxyI	CCTNAGG	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	551
BciVI	GTATCC	1 cut(s)	460
BcoDI	GTCTC	2 cut(s)	161, 574
BfaI	CTAG	2 cut(s)	425, 628
BfmI	CTRYAG	2 cut(s)	102, 579
BfoI	RGCGCY	1 cut(s)	415
BfuI	GTATCC	1 cut(s)	460
BisI	GCNGC	1 cut(s)	540
BlsI	GCNGC	1 cut(s)	541
BmeT110I	CYCGRG	1 cut(s)	571
BmsI	GCATC	2 cut(s)	91, 116
BsaWI	WCCGGW	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 459, 560
Bse1I	ACTGG	1 cut(s)	327
Bse21I	CCTNAGG	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	453
BseGI	GGATG	2 cut(s)	169, 466
BseLI	CCNNNNNNNGG	3 cut(s)	130, 459, 560
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	327
BseRI	GAGGAG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	551
BseYI	CCCAGC	1 cut(s)	363
Bsh1285I	CGRYCG	1 cut(s)	512
BsiEI	CGRYCG	1 cut(s)	512
BsiHKCI	CYCGRG	1 cut(s)	571
BsiSI	CCGG	1 cut(s)	596
BslI	CCNNNNNNNGG	3 cut(s)	130, 459, 560
BsmAI	GTCTC	2 cut(s)	161, 574
BsoBI	CYCGRG	1 cut(s)	571
Bsp1407I	TGTACA	1 cut(s)	616
Bsp143I	GATC	2 cut(s)	473, 509
BspCNI	CTCAG	1 cut(s)	172
BspQI	GCTCTTC	1 cut(s)	549
BsrDI	GCAATG	1 cut(s)	453
BsrGI	TGTACA	1 cut(s)	616
BsrI	ACTGG	1 cut(s)	327
BssMI	GATC	2 cut(s)	473, 509
BssNAI	GTATAC	1 cut(s)	13
Bst1107I	GTATAC	1 cut(s)	13
Bst4CI	ACNGT	4 cut(s)	17, 172, 359, 580
Bst6I	CTCTTC	1 cut(s)	549
BstAUI	TGTACA	1 cut(s)	616
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	169, 466
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	2 cut(s)	476, 512
BstMAI	GTCTC	2 cut(s)	161, 574
BstMBI	GATC	2 cut(s)	473, 509
BstMCI	CGRYCG	1 cut(s)	512
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 418
BstSFI	CTRYAG	2 cut(s)	102, 579
BstV1I	GCAGC	1 cut(s)	551
BstZ17I	GTATAC	1 cut(s)	13
Bsu36I	CCTNAGG	1 cut(s)	159
BsuI	GTATCC	1 cut(s)	460
BtsCI	GGATG	2 cut(s)	169, 466
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	241
CaiI	CAGNNNCTG	2 cut(s)	363, 482
CfoI	GCGC	1 cut(s)	414
Csp6I	GTAC	1 cut(s)	617
CviAII	CATG	4 cut(s)	8, 86, 493, 536
CviJI	RGCY	8 cut(s)	101, 192, 296, 398, 421, 479, 542, 611
CviKI_1	RGCY	8 cut(s)	101, 192, 296, 398, 421, 479, 542, 611
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	2 cut(s)	475, 511
DpnII	GATC	2 cut(s)	473, 509
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
Eco81I	CCTNAGG	1 cut(s)	159
Eco88I	CYCGRG	1 cut(s)	571
EcoRI	GAATTC	1 cut(s)	179
FaeI	CATG	4 cut(s)	11, 89, 496, 539
FalI	AAGNNNNNCTT	2 cut(s)	463, 495
FatI	CATG	4 cut(s)	7, 85, 492, 535
FauNDI	CATATG	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	540
FokI	GGATG	2 cut(s)	176, 453
Fsp4HI	GCNGC	1 cut(s)	540
FspBI	CTAG	2 cut(s)	425, 628
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	1 cut(s)	540
GsaI	CCCAGC	1 cut(s)	367
HaeII	RGCGCY	1 cut(s)	415
HapII	CCGG	1 cut(s)	596
HhaI	GCGC	1 cut(s)	414
Hin1II	CATG	4 cut(s)	11, 89, 496, 539
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HincII	GTYRAC	2 cut(s)	136, 382
HindII	GTYRAC	2 cut(s)	136, 382
HindIII	AAGCTT	2 cut(s)	190, 294
HinfI	GANTC	1 cut(s)	439
HpaI	GTTAAC	1 cut(s)	382
HpaII	CCGG	1 cut(s)	596
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	4 cut(s)	13, 136, 320, 382
Hpy188I	TCNGA	3 cut(s)	112, 288, 514
Hpy188III	TCNNGA	5 cut(s)	29, 161, 425, 571, 573
Hpy8I	GTNNAC	4 cut(s)	13, 136, 320, 382
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	4 cut(s)	17, 172, 359, 580
HpyCH4V	TGCA	3 cut(s)	234, 458, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 418
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	4 cut(s)	11, 89, 496, 539
HspAI	GCGC	1 cut(s)	412
KspAI	GTTAAC	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	473, 509
LguI	GCTCTTC	1 cut(s)	549
LpnPI	CCDG	7 cut(s)	14, 146, 225, 308, 349, 468, 609
Lsp1109I	GCAGC	1 cut(s)	551
LweI	GCATC	2 cut(s)	91, 116
MaeI	CTAG	2 cut(s)	425, 628
MaeIII	GTNAC	2 cut(s)	89, 488
MalI	GATC	2 cut(s)	475, 511
MboI	GATC	2 cut(s)	473, 509
MboII	GAAGA	2 cut(s)	536, 542
MfeI	CAATTG	1 cut(s)	309
MluCI	AATT	6 cut(s)	61, 67, 179, 309, 347, 591
MnlI	CCTC	3 cut(s)	168, 208, 382
MroXI	GAANNNNTTC	1 cut(s)	183
MseI	TTAA	3 cut(s)	66, 381, 503
MslI	CAYNNNNRTG	1 cut(s)	87
MspI	CCGG	1 cut(s)	596
MunI	CAATTG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	240, 418
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	2 cut(s)	473, 509
NlaIII	CATG	4 cut(s)	11, 89, 496, 539
NmuCI	GTSAC	1 cut(s)	89
PaeR7I	CTCGAG	1 cut(s)	571
PciSI	GCTCTTC	1 cut(s)	549
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	439
PkrI	GCNGC	1 cut(s)	541
Ple19I	CGATCG	1 cut(s)	512
PspFI	CCCAGC	1 cut(s)	363
PsrI	GAACNNNNNNTAC	1 cut(s)	35
PstNI	CAGNNNCTG	2 cut(s)	363, 482
PvuI	CGATCG	1 cut(s)	512
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
RseI	CAYNNNNRTG	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	549
SaqAI	TTAA	3 cut(s)	66, 381, 503
SatI	GCNGC	1 cut(s)	540
Sau3AI	GATC	2 cut(s)	473, 509
SetI	ASST	6 cut(s)	118, 194, 298, 481, 544, 629
SfaNI	GCATC	2 cut(s)	91, 116
SfcI	CTRYAG	2 cut(s)	102, 579
Sfr274I	CTCGAG	1 cut(s)	571
SlaI	CTCGAG	1 cut(s)	571
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	571
SmoI	CTYRAG	1 cut(s)	571
Sse9I	AATT	6 cut(s)	61, 67, 179, 309, 347, 591
SspMI	CTAG	2 cut(s)	425, 628
TaaI	ACNGT	4 cut(s)	17, 172, 359, 580
TaqI	TCGA	1 cut(s)	572
TasI	AATT	6 cut(s)	61, 67, 179, 309, 347, 591
TatI	WGTACW	1 cut(s)	616
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	3 cut(s)	66, 381, 503
Tru9I	TTAA	3 cut(s)	66, 381, 503
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	1 cut(s)	539
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	4 cut(s)	54, 341, 536, 537
TspRI	CASTG	1 cut(s)	241
XapI	RAATTY	2 cut(s)	179, 347
XbaI	TCTAGA	1 cut(s)	424
XhoI	CTCGAG	1 cut(s)	571
XmiI	GTMKAC	1 cut(s)	12
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	2 cut(s)	425, 628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.