FvH4_7g06120

Geranylgeranyl diphosphate reductase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
6275924 .. 6277792
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06120.t1

Sequence Viewer

Length: 1347 bp
ATGGCTTCAGCAACGCAAGCAGCCGCGATCTCCGGCGCTCTCTTCGCCGCCGCTCCTCTCCACACGAAGCCACGCTCCGTCACCTTCAGAATAACCGCCTCCAACCCACCCATCGTCGGCCGGAAGCTCCGCGCGGCAGTCATCGGCGCCGGTCCCGCCGGGTCCTCGGCCGCAGAGGCCTTAGCCGCCGGCGGAGCCGAGTGCTTCCTCTTCGAGCGAGCACCGTCGGAGGCCAAGCCCTGCGGCGGAGCCATCCCAATCTGCATGCTCGACGAGTTCGACATCCCGGCCCGACTCATCGACCGCCACGTCACCCGCATGAGGATCTTCTCCCCCTCCAACCTCGCTGTCGACTTCGGCAAGACCCTCCGCCCCGACGAGTTCATCGCCATGCTCCGCCGCGAAGTCCTCGACTCCTTCCTCCGCGACCGCGCCCAGTCCCGCGGCGCCTCCCTCATCTCCGGCCTCGTCACCCGCCTCGAGATCCCCGCCTCCCCCCACGCGCCCTACGTCGTCCACTACACGAAGGACAACGCGCGCCACGCGCTCGCCGTGGACGTCGTGGTCGGCGCCGACGGCGCCAACAGCCGCGTGGCCAAGTCGATCAAGGCCGGAAGCTACGCCTGCGCCATCGCTTTTCAGGAGCGAATCAAACTCACGGACGACAAAATGGCCTACTACCAAGACCTCGCCGAAATGTACGTCGGAAACGACGTGTCGCCCGACTTTTACGCGTGGGTCTTCCCGAAATGCGACCACGTGGCAGTGGGCACCGGCACTGTGTGCTCCAAGCAGGACATCAAGGTCTTCCAGAGGGCCATCAGAGCCAGGGCCAGCGCCAAGATCAGCGGCGGGAAAGTCATCAAGGTGGAGGCGCACCCGATCCCGGAGCACCCCCGCCCCACGCGCGTCAGGGGGCGCGTGTCCCTCATTGGTGATGCGGCCGGGTACGTGACGAAATGCTCCGGCGAGGGGATCTATTTCGCGGCGAAATCGGGGAGGATGTGCGGCGAGGCGATTATAAAAGCGTCGGAGGGAGGGGAGAGGATGATAAATGAGGAGGATTTGAAGAGGGAGTATTTGAAAAAATGGGATGCTAAGTACATTACGACGTTTAGGTTCTTGGACTTGTTGCAGAAGGTGTTTTATGGCAGTGATGCGGCGAGAGAGGCTTTGGTGGAGCTGTGTGGGGATGAGTATGTGCAGCGCATGACTTTCGAGAGTTACTTGTACAAGAAGTTAGCTGATGGGAATAGGTGGGATGATGCTAAGATGGTTTTGAATACGGTTGGGAGTTTGATGAGGTGTAATGTTTTGGGGAGGAAGATGGAGGCTTTGAAGATTTGA

Protein Analysis

449

Amino Acids

48.87

Weight (kDa)

9.2

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 44 - 331 9.4e-09 FAD binding domain
GGR_cat PF22578 223 - 268 7.3e-07 Geranylgeranyl reductase catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016913)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1022
AasI GACNNNNNNGTC 3 cut(s) 308, 563, 803
AatII GACGTC 1 cut(s) 561
AccB1I GGYRCC 5 cut(s) 146, 446, 569, 578, 770
AccBSI CCGCTC 1 cut(s) 53
AccI GTMKAC 1 cut(s) 351
AclWI GGATC 4 cut(s) 332, 478, 877, 983
AcoI YGGCCR 4 cut(s) 118, 168, 594, 942
AcuI CTGAAG 1 cut(s) 70
AcvI CACGTG 1 cut(s) 760
AcyI GRCGYC 5 cut(s) 147, 447, 558, 570, 579
AdeI CACNNNGTG 1 cut(s) 783
AfaI GTAC 4 cut(s) 701, 950, 1103, 1232
AfiI CCNNNNNNNGG 5 cut(s) 116, 245, 321, 886, 972
AflIII ACRYGT 2 cut(s) 714, 732
AgsI TTSAA 4 cut(s) 1069, 1084, 1282, 1339
AjiI CACGTC 2 cut(s) 310, 715
AjnI CCWGG 1 cut(s) 827
AluBI AGCT 4 cut(s) 127, 618, 1183, 1244
AluI AGCT 4 cut(s) 127, 618, 1183, 1244
Alw21I GWGCWC 3 cut(s) 223, 788, 894
AlwI GGATC 4 cut(s) 332, 478, 877, 983
Ama87I CYCGRG 1 cut(s) 479
ApeKI GCWGC 2 cut(s) 20, 1204
ArsI GACNNNNNNTTYG 2 cut(s) 687, 719
AspS9I GGNCC 5 cut(s) 152, 162, 289, 816, 831
AsuC2I CCSGG 4 cut(s) 160, 287, 887, 946
AsuHPI GGTGA 4 cut(s) 73, 304, 463, 947
AvaI CYCGRG 1 cut(s) 479
AvaII GGWCC 2 cut(s) 152, 162
BaeGI GKGCMC 1 cut(s) 773
BalI TGGCCA 1 cut(s) 596
BanI GGYRCC 5 cut(s) 146, 446, 569, 578, 770
BbrPI CACGTG 1 cut(s) 760
BbsI GAAGAC 2 cut(s) 733, 799
Bbv12I GWGCWC 3 cut(s) 223, 788, 894
BbvI GCAGC 2 cut(s) 32, 1216
BccI CCATC 7 cut(s) 119, 260, 638, 827, 1241, 1267, 1321
BceAI ACGGC 2 cut(s) 536, 592
BcgI CGANNNNNNTGC 2 cut(s) 1198, 1232
BciT130I CCWGG 1 cut(s) 829
BcnI CCSGG 4 cut(s) 160, 287, 887, 946
BfoI RGCGCY 6 cut(s) 39, 150, 450, 573, 582, 840
BglI GCCNNNNNGGC 1 cut(s) 176
Bme1390I CCNGG 5 cut(s) 160, 287, 829, 887, 946
Bme18I GGWCC 2 cut(s) 152, 162
BmeT110I CYCGRG 1 cut(s) 479
BmgBI CACGTC 2 cut(s) 310, 715
BmgT120I GGNCC 5 cut(s) 152, 162, 289, 816, 831
BmiI GGNNCC 9 cut(s) 148, 154, 163, 196, 250, 448, 571, 580, 772
BmrFI CCNGG 5 cut(s) 160, 287, 829, 887, 946
BmrI ACTGGG 1 cut(s) 430
BmsI GCATC 4 cut(s) 928, 1084, 1147, 1255
BmuI ACTGGG 1 cut(s) 430
BpiI GAAGAC 2 cut(s) 733, 799
Bpu10I CCTNAGC 1 cut(s) 181
BpuMI CCSGG 4 cut(s) 160, 287, 887, 946
BsaAI YACGTR 2 cut(s) 760, 952
BsaHI GRCGYC 5 cut(s) 147, 447, 558, 570, 579
BsaJI CCNNGG 4 cut(s) 165, 442, 552, 828
Bsc4I CCNNNNNNNGG 5 cut(s) 116, 245, 321, 886, 972
Bse118I RCCGGY 3 cut(s) 149, 188, 773
Bse1I ACTGG 1 cut(s) 436
BseBI CCWGG 1 cut(s) 829
BseDI CCNNGG 4 cut(s) 165, 442, 552, 828
BseGI GGATG 7 cut(s) 252, 282, 1008, 1053, 1099, 1198, 1267
BseLI CCNNNNNNNGG 5 cut(s) 116, 245, 321, 886, 972
BseNI ACTGG 1 cut(s) 436
BsePI GCGCGC 1 cut(s) 536
BseRI GAGGAG 2 cut(s) 45, 1073
BseSI GKGCMC 1 cut(s) 773
BseX3I CGGCCG 3 cut(s) 118, 168, 942
BseXI GCAGC 2 cut(s) 32, 1216
BsgI GTGCAG 1 cut(s) 1223
Bsh1285I CGRYCG 5 cut(s) 121, 171, 304, 430, 945
BshNI GGYRCC 5 cut(s) 146, 446, 569, 578, 770
BsiEI CGRYCG 5 cut(s) 121, 171, 304, 430, 945
BsiHKAI GWGCWC 3 cut(s) 223, 788, 894
BsiHKCI CYCGRG 1 cut(s) 479
BslFI GGGAC 3 cut(s) 138, 424, 910
BslI CCNNNNNNNGG 5 cut(s) 116, 245, 321, 886, 972
BsmFI GGGAC 3 cut(s) 138, 424, 910
BsoBI CYCGRG 1 cut(s) 479
Bsp1286I GDGCHC 4 cut(s) 223, 773, 788, 894
Bsp1407I TGTACA 1 cut(s) 1230
Bsp143I GATC 7 cut(s) 27, 324, 483, 603, 843, 882, 975
BspLI GGNNCC 9 cut(s) 148, 154, 163, 196, 250, 448, 571, 580, 772
BspPI GGATC 4 cut(s) 332, 478, 877, 983
BspT107I GGYRCC 5 cut(s) 146, 446, 569, 578, 770
BsrBI CCGCTC 1 cut(s) 53
BsrFI RCCGGY 3 cut(s) 149, 188, 773
BsrGI TGTACA 1 cut(s) 1230
BsrI ACTGG 1 cut(s) 436
BssAI RCCGGY 3 cut(s) 149, 188, 773
BssECI CCNNGG 4 cut(s) 165, 442, 552, 828
BssHII GCGCGC 1 cut(s) 536
BssMI GATC 7 cut(s) 27, 324, 483, 603, 843, 882, 975
BssNI GRCGYC 5 cut(s) 147, 447, 558, 570, 579
Bst2UI CCWGG 1 cut(s) 829
Bst4CI ACNGT 3 cut(s) 225, 781, 1288
Bst6I CTCTTC 3 cut(s) 47, 215, 1064
BstACI GRCGYC 5 cut(s) 147, 447, 558, 570, 579
BstAPI GCANNNNNTGC 1 cut(s) 783
BstAUI TGTACA 1 cut(s) 1230
BstBAI YACGTR 2 cut(s) 760, 952
BstC8I GCNNGC 8 cut(s) 18, 190, 219, 266, 538, 549, 625, 835
BstDEI CTNAG 3 cut(s) 181, 1098, 1269
BstDSI CCRYGG 2 cut(s) 442, 552
BstF5I GGATG 7 cut(s) 252, 282, 1008, 1053, 1099, 1198, 1267
BstH2I RGCGCY 6 cut(s) 39, 150, 450, 573, 582, 840
BstKTI GATC 7 cut(s) 30, 327, 486, 606, 846, 885, 978
BstMBI GATC 7 cut(s) 27, 324, 483, 603, 843, 882, 975
BstMCI CGRYCG 5 cut(s) 121, 171, 304, 430, 945
BstNI CCWGG 1 cut(s) 829
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 5 cut(s) 158, 285, 827, 885, 944
BstSLI GKGCMC 1 cut(s) 773
BstV1I GCAGC 2 cut(s) 32, 1216
BstV2I GAAGAC 2 cut(s) 733, 799
BstX2I RGATCY 3 cut(s) 324, 483, 975
BstYI RGATCY 3 cut(s) 324, 483, 975
BstZI CGGCCG 3 cut(s) 118, 168, 942
BtgI CCRYGG 2 cut(s) 442, 552
BtgZI GCGATG 2 cut(s) 370, 616
BtrI CACGTC 2 cut(s) 310, 715
BtsCI GGATG 7 cut(s) 252, 282, 1008, 1053, 1099, 1198, 1267
BtsI GCAGTG 2 cut(s) 771, 1159
BtsIMutI CAGTG 3 cut(s) 771, 777, 1159
Cac8I GCNNGC 8 cut(s) 18, 190, 219, 266, 538, 549, 625, 835
Cfr10I RCCGGY 3 cut(s) 149, 188, 773
Cfr13I GGNCC 5 cut(s) 152, 162, 289, 816, 831
Cfr42I CCGCGG 1 cut(s) 445
CseI GACGC 2 cut(s) 898, 1017
Csp6I GTAC 4 cut(s) 700, 949, 1102, 1231
CviAII CATG 4 cut(s) 265, 319, 391, 1210
CviQI GTAC 4 cut(s) 700, 949, 1102, 1231
DdeI CTNAG 3 cut(s) 181, 1098, 1269
DinI GGCGCC 4 cut(s) 148, 448, 571, 580
DpnI GATC 7 cut(s) 29, 326, 485, 605, 845, 884, 977
DpnII GATC 7 cut(s) 27, 324, 483, 603, 843, 882, 975
DraIII CACNNNGTG 1 cut(s) 783
DrdI GACNNNNNNGTC 3 cut(s) 308, 563, 803
DseDI GACNNNNNNGTC 3 cut(s) 308, 563, 803
EaeI YGGCCR 4 cut(s) 118, 168, 594, 942
EagI CGGCCG 3 cut(s) 118, 168, 942
Eam1104I CTCTTC 3 cut(s) 47, 215, 1064
EarI CTCTTC 3 cut(s) 47, 215, 1064
EciI GGCGGA 4 cut(s) 207, 261, 359, 386
EclXI CGGCCG 3 cut(s) 118, 168, 942
Eco147I AGGCCT 1 cut(s) 179
Eco47I GGWCC 2 cut(s) 152, 162
Eco52I CGGCCG 3 cut(s) 118, 168, 942
Eco57I CTGAAG 1 cut(s) 70
Eco72I CACGTG 1 cut(s) 760
Eco88I CYCGRG 1 cut(s) 479
EcoO109I RGGNCCY 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 827
EgeI GGCGCC 4 cut(s) 148, 448, 571, 580
EheI GGCGCC 4 cut(s) 148, 448, 571, 580
FaeI CATG 4 cut(s) 268, 322, 394, 1213
FaiI YATR 7 cut(s) 266, 320, 392, 1022, 1149, 1200, 1211
FaqI GGGAC 3 cut(s) 138, 424, 910
FatI CATG 4 cut(s) 264, 318, 390, 1209
FauI CCCGC 7 cut(s) 163, 323, 449, 482, 496, 845, 905
FblI GTMKAC 1 cut(s) 351
FokI GGATG 7 cut(s) 239, 269, 1015, 1060, 1106, 1205, 1274
HaeII RGCGCY 6 cut(s) 39, 150, 450, 573, 582, 840
HgaI GACGC 2 cut(s) 898, 1017
Hin1I GRCGYC 5 cut(s) 147, 447, 558, 570, 579
Hin1II CATG 4 cut(s) 268, 322, 394, 1213
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 3 cut(s) 294, 413, 648
HphI GGTGA 4 cut(s) 73, 304, 463, 947
Hpy166II GTNNAC 3 cut(s) 352, 517, 556
Hpy188I TCNGA 5 cut(s) 89, 229, 707, 824, 1033
Hpy188III TCNNGA 5 cut(s) 481, 641, 745, 811, 1219
Hpy8I GTNNAC 3 cut(s) 352, 517, 556
HpyAV CCTTC 4 cut(s) 94, 427, 520, 1132
HpyCH4III ACNGT 3 cut(s) 225, 781, 1288
HpyCH4IV ACGT 8 cut(s) 309, 510, 558, 702, 714, 759, 951, 1112
HpyCH4V TGCA 3 cut(s) 264, 1135, 1204
HpyF3I CTNAG 3 cut(s) 181, 1098, 1269
HpySE526I ACGT 8 cut(s) 309, 510, 558, 702, 714, 759, 951, 1112
Hsp92I GRCGYC 5 cut(s) 147, 447, 558, 570, 579
Hsp92II CATG 4 cut(s) 268, 322, 394, 1213
KasI GGCGCC 4 cut(s) 146, 446, 569, 578
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
KspI CCGCGG 1 cut(s) 445
Kzo9I GATC 7 cut(s) 27, 324, 483, 603, 843, 882, 975
Lsp1109I GCAGC 2 cut(s) 32, 1216
LweI GCATC 4 cut(s) 928, 1084, 1147, 1255
MaeII ACGT 8 cut(s) 309, 510, 558, 702, 714, 759, 951, 1112
MaeIII GTNAC 5 cut(s) 79, 310, 469, 952, 1223
MalI GATC 7 cut(s) 29, 326, 485, 605, 845, 884, 977
MbiI CCGCTC 1 cut(s) 53
MboI GATC 7 cut(s) 27, 324, 483, 603, 843, 882, 975
MboII GAAGA 7 cut(s) 34, 202, 319, 733, 799, 1081, 1336
MflI RGATCY 3 cut(s) 324, 483, 975
MhlI GDGCHC 4 cut(s) 223, 773, 788, 894
MlsI TGGCCA 1 cut(s) 596
MluI ACGCGT 1 cut(s) 732
MluNI TGGCCA 1 cut(s) 596
Mly113I GGCGCC 4 cut(s) 147, 447, 570, 579
MlyI GAGTC 2 cut(s) 288, 407
MmeI TCCRAC 5 cut(s) 126, 207, 363, 685, 1011
Mox20I TGGCCA 1 cut(s) 596
MreI CGCCGGCG 1 cut(s) 188
MroNI GCCGGC 1 cut(s) 188
MscI TGGCCA 1 cut(s) 596
MslI CAYNNNNRTG 3 cut(s) 317, 389, 866
Msp20I TGGCCA 1 cut(s) 596
MspA1I CMGCKG 2 cut(s) 444, 849
MspR9I CCNGG 5 cut(s) 160, 287, 829, 887, 946
MvaI CCWGG 1 cut(s) 829
NaeI GCCGGC 1 cut(s) 190
NarI GGCGCC 4 cut(s) 147, 447, 570, 579
NciI CCSGG 4 cut(s) 160, 287, 887, 946
NdeII GATC 7 cut(s) 27, 324, 483, 603, 843, 882, 975
NgoMIV GCCGGC 1 cut(s) 188
NlaIII CATG 4 cut(s) 268, 322, 394, 1213
NlaIV GGNNCC 9 cut(s) 148, 154, 163, 196, 250, 448, 571, 580, 772
NmeAIII GCCGAG 2 cut(s) 146, 223
NmuCI GTSAC 4 cut(s) 79, 310, 469, 952
NspI RCATGY 1 cut(s) 268
PaeI GCATGC 1 cut(s) 268
PaeR7I CTCGAG 1 cut(s) 479
PauI GCGCGC 1 cut(s) 536
PceI AGGCCT 1 cut(s) 179
PcsI WCGNNNNNNNCGW 8 cut(s) 276, 306, 507, 549, 555, 708, 711, 720
PdiI GCCGGC 1 cut(s) 190
PfeI GAWTC 1 cut(s) 648
PfoI TCCNGGA 1 cut(s) 885
PleI GAGTC 2 cut(s) 288, 407
PluTI GGCGCC 4 cut(s) 150, 450, 573, 582
PmaCI CACGTG 1 cut(s) 760
PmlI CACGTG 1 cut(s) 760
PpsI GAGTC 2 cut(s) 288, 407
Ppu21I YACGTR 2 cut(s) 760, 952
PpuMI RGGWCCY 1 cut(s) 162
PsiI TTATAA 1 cut(s) 1022
Psp5II RGGWCCY 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 827
PspCI CACGTG 1 cut(s) 760
PspGI CCWGG 1 cut(s) 827
PspN4I GGNNCC 9 cut(s) 148, 154, 163, 196, 250, 448, 571, 580, 772
PspPI GGNCC 5 cut(s) 152, 162, 289, 816, 831
PspPPI RGGWCCY 1 cut(s) 162
PsuI RGATCY 3 cut(s) 324, 483, 975
PteI GCGCGC 1 cut(s) 536
RsaI GTAC 4 cut(s) 701, 950, 1103, 1232
RsaNI GTAC 4 cut(s) 700, 949, 1102, 1231
RseI CAYNNNNRTG 3 cut(s) 317, 389, 866
SacII CCGCGG 1 cut(s) 445
SalI GTCGAC 1 cut(s) 350
Sau3AI GATC 7 cut(s) 27, 324, 483, 603, 843, 882, 975
Sau96I GGNCC 5 cut(s) 152, 162, 289, 816, 831
SchI GAGTC 2 cut(s) 288, 407
ScrFI CCNGG 5 cut(s) 160, 287, 829, 887, 946
SduI GDGCHC 4 cut(s) 223, 773, 788, 894
SfaNI GCATC 4 cut(s) 928, 1084, 1147, 1255
SfiI GGCCNNNNNGGCC 1 cut(s) 176
SfoI GGCGCC 4 cut(s) 148, 448, 571, 580
Sfr274I CTCGAG 1 cut(s) 479
Sfr303I CCGCGG 1 cut(s) 445
SgrAI CRCCGGYG 1 cut(s) 188
SgrBI CCGCGG 1 cut(s) 445
SinI GGWCC 2 cut(s) 152, 162
SlaI CTCGAG 1 cut(s) 479
SmiMI CAYNNNNRTG 3 cut(s) 317, 389, 866
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
SphI GCATGC 1 cut(s) 268
SseBI AGGCCT 1 cut(s) 179
SspDI GGCGCC 4 cut(s) 146, 446, 569, 578
StuI AGGCCT 1 cut(s) 179
StyD4I CCNGG 5 cut(s) 158, 285, 827, 885, 944
TaaI ACNGT 3 cut(s) 225, 781, 1288
TaiI ACGT 8 cut(s) 312, 513, 561, 705, 717, 762, 954, 1115
TaqI TCGA 9 cut(s) 213, 270, 279, 300, 351, 411, 480, 602, 1218
TatI WGTACW 2 cut(s) 1101, 1230
TfiI GAWTC 1 cut(s) 648
TscAI CASTG 3 cut(s) 771, 784, 1159
TseFI GTSAC 4 cut(s) 79, 310, 469, 952
TseI GCWGC 2 cut(s) 20, 1204
Tsp45I GTSAC 4 cut(s) 79, 310, 469, 952
TspDTI ATGAA 1 cut(s) 373
TspGWI ACGGA 2 cut(s) 67, 674
TspRI CASTG 3 cut(s) 771, 784, 1159
VpaK11BI GGWCC 2 cut(s) 152, 162
XceI RCATGY 1 cut(s) 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 589
XhoI CTCGAG 1 cut(s) 479
XmiI GTMKAC 1 cut(s) 351
ZraI GACGTC 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.