Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0016913

Physical Location & Seq

Genomic Coordinates Reverse (-)

19937039 .. 19946174

Gene Structure 9136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0112000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGTTGATCGTCTTTTCGAGGATATATTTCAGGTGTTGCGACTGAACCCAGATGGAAAAAAGTTTGATAAAGTTACCCGAGTTGAAGCAAAGAGTGAGGCTTGCGAGATGTTCATGCACCTTGATGTGAATTCAGAGGTACGTGTACCCCATCAAAGAAGGCGAGAAGTTCTCCATGGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006725 GO:0006766 GO:0006775 GO:0006778 GO:0006779 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009110 GO:0009987 GO:0010189 GO:0015994 GO:0015995 GO:0016114 GO:0016491 GO:0018130 GO:0019438 GO:0019637 GO:0033013 GO:0033014 GO:0033385 GO:0033519 GO:0033521 GO:0034641 GO:0042360 GO:0042362 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0045550 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00860 ko00900 ko01100 ko01110 map00860 map00900 map01100 map01110

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

61

Amino Acids

7.24

Weight (kDa)

6.82

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb8	PF03870	7 - 47	6.1e-12	RNA polymerase Rpb8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016913)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06120
malus_domestica	MD00G1178300.v1.1
prunus_persica	Prupe.6G153000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0333811
rosa_laevigata	RLG00000029529
rosa_multiflora	Rmu_sc0000026.1_g000018 Rmu_sc0007177.1_g000004
rosa_roxburghii	Rroxscaffold_4G00317220
rosa_rugosa	Rorug01G0112000
rosa_samantha	Rh1AG134400 Rh1BG102900 Rh1CG128000 Rh1DG139900
rosa_wichuraiana	Rw1G011210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	2 cut(s)	141, 147
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	86
Ama87I	CYCGRG	1 cut(s)	78
ApoI	RAATTY	1 cut(s)	130
AvaI	CYCGRG	1 cut(s)	78
BccI	CCATC	2 cut(s)	47, 159
BmeT110I	CYCGRG	1 cut(s)	78
BplI	GAGNNNNNCTC	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	175
BseDI	CCNNGG	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	78
BsoBI	CYCGRG	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	7
Bsp19I	CCATGG	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	175
BstBAI	YACGTR	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	183
BstDSI	CCRYGG	1 cut(s)	175
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BtgI	CCRYGG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	140, 146
CviAII	CATG	2 cut(s)	115, 176
CviJI	RGCY	2 cut(s)	101, 180
CviKI_1	RGCY	2 cut(s)	101, 180
CviQI	GTAC	2 cut(s)	140, 146
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	78
EcoRI	GAATTC	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	2 cut(s)	118, 179
FaiI	YATR	3 cut(s)	26, 116, 177
FatI	CATG	2 cut(s)	114, 175
Hin1II	CATG	2 cut(s)	118, 179
Hpy166II	GTNNAC	1 cut(s)	146
Hpy188I	TCNGA	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	1 cut(s)	118
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	142
Hsp92II	CATG	2 cut(s)	118, 179
Kzo9I	GATC	1 cut(s)	7
LpnPI	CCDG	2 cut(s)	17, 63
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MluCI	AATT	1 cut(s)	130
MnlI	CCTC	3 cut(s)	13, 91, 130
MslI	CAYNNNNRTG	1 cut(s)	123
NcoI	CCATGG	1 cut(s)	175
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	2 cut(s)	118, 179
Ppu21I	YACGTR	1 cut(s)	143
RsaI	GTAC	2 cut(s)	141, 147
RsaNI	GTAC	2 cut(s)	140, 146
RseI	CAYNNNNRTG	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	7
SetI	ASST	4 cut(s)	36, 123, 141, 145
SmiMI	CAYNNNNRTG	1 cut(s)	123
Sse9I	AATT	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	175
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	1 cut(s)	18
TasI	AATT	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	103
XapI	RAATTY	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.