FvH4_7g08000

E3 ubiquitin-protein ligase PUB23-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
7923649 .. 7925421
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08000.t1

Sequence Viewer

Length: 1236 bp
ATGGCCATGGATTTTCCTCCATACCATTTCAGATGCCCTATTTCCATGGAGCTCATGAAGGACCCTGTTACCATCTCCACCGGCGTCACATACGAACGTGTCAACATCGAGAAATGGTTCTTCACATACAAGAAGAAAACATGCCCGGCCACTATGCAAAGAATCGAAAATTTCGACACCATACCAAATCACACCCTCAAGAGGCTCATTCTTGCATGGCAAAACCAAGGGGACTCGAAATCATCTGAGTTATCGAATTCGCCTTCTGATAAACATGAGGAGATTGAAGCACTTCTCAGCACGATCATGTCTTCCCCATTCAAGGTCAGTTCCTTAAAGAAACTTCGTTCCATTATTGACATGGGTGAGGAGACAAAAAATGACTTCATTAGTTGTAAAGGAGTGGAAGTTCTTGTTCAAATACTTGACCAAACCCTCACAGAGAACTCGGATTTCGTAACCTTTCGGGCCTGCGAGGAAGCTCTTTGTATTCTTCACCAACTTCCCATCTCAGAGGAAGAAGGTGACTCTTTTAAGCTGTTGTCAAAACAAGACTCCACCAGATCAATGGCGATCATGCTTCAGCGGGGAAGCGCTGAAGCACGCCTTCACACCATTACCATATTCAAGAAGATGGCAAAAACCAATTACGACTGGAACTTTGTGATACAAGATCAAGGTTTGGATTTCTTCAAATCCTTGTTGGAGCTAGTTTCAGACGAAATATGTAGCAAAGCGAGCTCATGTGCCTTGGAGGTGCTGATAGAAATCTTGAGAGCATCAAAGAAAAACAAGTTGAAGGCAATTGAAGCAGGTGCAGTTTGTGTCCTAATAGAGCTACTTCCAGAGTCCAGCAGATCCAGATGTGAGAAAATGTTGCAAGTGATCAAGTTACTATGTGAATGTGCTGAGGGGAGGCTGGCCCTGGTGGAACATGGCATGGGCATTGTCGTGATTTCGAAGAAGATGATGCATGTTTCCAATGTTGCTACCAAGATTGGGGTGAAGATCATGTGGTTGGTTTGTAATTTTCACCCAACTGAGAAAGTGTTGGAGGAAATGTTGATATATGGATCGGTGAAGAAGCTCCTTGCACTGTTGCATATGGACGGAAGGTCTTCGACGAAAGATAAAGTTGTGAAGATCTTCAGGTTGCATGGAAATTCATGGAAACGGTACCCTTGCTACCCTTGTGATTTGAAGGGATACTTAGGATGTGTGAATGAAATTTGCTAA

Protein Analysis

412

Amino Acids

46.65

Weight (kDa)

8.06

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 7 - 76 8.3e-16 U-box domain
ARM_PUB PF25598 94 - 396 2.6e-54 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g08000
malus_domestica MD02G1229800.v1.1 MD07G1083300.v1.1
prunus_persica Prupe.2G109000_v2.0.a1
pyrus_communis pycom07g06670
rosa_chinensis RchiOBHm_Chr1g0341311
rosa_laevigata RLG00000029083
rosa_multiflora Rmu_sc0004092.1_g000049
rosa_roxburghii Rroxscaffold_4G00311950
rosa_rugosa Rorug01G0157700.1
rosa_samantha Rh1AG172300 Rh1BG140300 Rh1CG160400 Rh1DG172600
rosa_wichuraiana Rw1G014370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 803
Acc36I ACCTGC 1 cut(s) 803
Acc65I GGTACC 1 cut(s) 1176
AccB1I GGYRCC 1 cut(s) 1176
AciI CCGC 1 cut(s) 586
AclWI GGATC 2 cut(s) 852, 1081
AcoI YGGCCR 2 cut(s) 3, 147
AcsI RAATTY 4 cut(s) 169, 256, 1162, 1227
AcuI CTGAAG 3 cut(s) 566, 618, 1132
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 1 cut(s) 1178
AfeI AGCGCT 1 cut(s) 595
AfiI CCNNNNNNNGG 3 cut(s) 201, 322, 999
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 8 cut(s) 287, 322, 419, 628, 694, 799, 809, 1201
AhdI GACNNNNNGTC 1 cut(s) 1114
AjnI CCWGG 1 cut(s) 924
AloI GAACNNNNNNTCC 2 cut(s) 393, 425
AluBI AGCT 7 cut(s) 52, 482, 538, 709, 741, 838, 1087
AluI AGCT 7 cut(s) 52, 482, 538, 709, 741, 838, 1087
Alw21I GWGCWC 2 cut(s) 54, 743
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 2 cut(s) 852, 1081
Aor51HI AGCGCT 1 cut(s) 595
AoxI GGCC 4 cut(s) 3, 147, 468, 921
ApoI RAATTY 4 cut(s) 169, 256, 1162, 1227
ArsI GACNNNNNNTTYG 2 cut(s) 644, 676
Asp700I GAANNNNTTC 4 cut(s) 116, 291, 1117, 1145
Asp718I GGTACC 1 cut(s) 1176
AspLEI GCGC 1 cut(s) 596
AspS9I GGNCC 3 cut(s) 61, 468, 922
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 6 cut(s) 377, 488, 536, 1015, 1025, 1090
AsuII TTCGAA 1 cut(s) 959
AvaII GGWCC 1 cut(s) 61
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 1176
BanII GRGCYC 2 cut(s) 54, 743
BbsI GAAGAC 2 cut(s) 303, 1110
Bbv12I GWGCWC 2 cut(s) 54, 743
BbvCI CCTCAGC 1 cut(s) 909
BccI CCATC 3 cut(s) 80, 515, 628
BciT130I CCWGG 1 cut(s) 926
BciVI GTATCC 1 cut(s) 1199
BclI TGATCA 1 cut(s) 885
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 1 cut(s) 710
BfoI RGCGCY 1 cut(s) 597
BfuAI ACCTGC 1 cut(s) 803
BfuI GTATCC 1 cut(s) 1199
BglII AGATCT 1 cut(s) 1143
Bme1390I CCNGG 2 cut(s) 146, 926
Bme18I GGWCC 1 cut(s) 61
BmeRI GACNNNNNGTC 1 cut(s) 1114
BmgT120I GGNCC 3 cut(s) 61, 468, 922
BmiI GGNNCC 2 cut(s) 63, 1178
BmrFI CCNGG 2 cut(s) 146, 926
BmsI GCATC 3 cut(s) 23, 788, 960
BpiI GAAGAC 2 cut(s) 303, 1110
Bpu10I CCTNAGC 1 cut(s) 909
Bpu14I TTCGAA 1 cut(s) 959
BpuEI CTTGAG 2 cut(s) 182, 793
BpuMI CCSGG 1 cut(s) 146
BsaBI GATNNNNATC 1 cut(s) 767
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 5 cut(s) 6, 45, 226, 750, 924
BsaXI ACNNNNNCTCC 4 cut(s) 393, 423, 1046, 1076
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 322, 999
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 659
Bse8I GATNNNNATC 1 cut(s) 767
BseBI CCWGG 1 cut(s) 926
BseDI CCNNGG 5 cut(s) 6, 45, 226, 750, 924
BseGI GGATG 1 cut(s) 1220
BseJI GATNNNNATC 1 cut(s) 767
BseLI CCNNNNNNNGG 3 cut(s) 201, 322, 999
BseMII CTCAG 5 cut(s) 237, 310, 525, 900, 1032
BseNI ACTGG 1 cut(s) 659
BseRI GAGGAG 2 cut(s) 293, 383
BsgI GTGCAG 1 cut(s) 837
BshFI GGCC 4 cut(s) 5, 149, 470, 923
BshNI GGYRCC 1 cut(s) 1176
BsiHKAI GWGCWC 2 cut(s) 54, 743
BsiSI CCGG 2 cut(s) 81, 146
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 3 cut(s) 201, 322, 999
BsmAI GTCTC 1 cut(s) 365
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 4 cut(s) 5, 149, 470, 923
Bsp119I TTCGAA 1 cut(s) 959
Bsp1286I GDGCHC 2 cut(s) 54, 743
Bsp143I GATC 9 cut(s) 303, 563, 573, 673, 857, 885, 1008, 1073, 1143
Bsp19I CCATGG 2 cut(s) 6, 45
BspACI CCGC 1 cut(s) 586
BspANI GGCC 4 cut(s) 5, 149, 470, 923
BspCNI CTCAG 5 cut(s) 238, 309, 524, 901, 1033
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 63, 1178
BspMI ACCTGC 1 cut(s) 803
BspPI GGATC 2 cut(s) 852, 1081
BspT104I TTCGAA 1 cut(s) 959
BspT107I GGYRCC 1 cut(s) 1176
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 1 cut(s) 659
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 5 cut(s) 6, 45, 226, 750, 924
BssMI GATC 9 cut(s) 303, 563, 573, 673, 857, 885, 1008, 1073, 1143
BssNI GRCGYC 1 cut(s) 84
BssT1I CCWWGG 4 cut(s) 6, 45, 226, 750
Bst2UI CCWGG 1 cut(s) 926
Bst4CI ACNGT 2 cut(s) 1098, 1176
BstACI GRCGYC 1 cut(s) 84
BstBI TTCGAA 1 cut(s) 959
BstC8I GCNNGC 4 cut(s) 472, 604, 739, 921
BstDEI CTNAG 6 cut(s) 246, 296, 511, 909, 1041, 1210
BstDSI CCRYGG 2 cut(s) 6, 45
BstF5I GGATG 1 cut(s) 1220
BstH2I RGCGCY 1 cut(s) 597
BstHHI GCGC 1 cut(s) 596
BstKTI GATC 9 cut(s) 306, 566, 576, 676, 860, 888, 1011, 1076, 1146
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 9 cut(s) 303, 563, 573, 673, 857, 885, 1008, 1073, 1143
BstMWI GCNNNNNNNGC 2 cut(s) 738, 809
BstNI CCWGG 1 cut(s) 926
BstNSI RCATGY 2 cut(s) 144, 977
BstSCI CCNGG 2 cut(s) 144, 924
BstV2I GAAGAC 2 cut(s) 303, 1110
BstX2I RGATCY 2 cut(s) 857, 1143
BstXI CCANNNNNNTGG 1 cut(s) 568
BstYI RGATCY 2 cut(s) 857, 1143
BsuI GTATCC 1 cut(s) 1199
BsuRI GGCC 4 cut(s) 5, 149, 470, 923
BtgI CCRYGG 2 cut(s) 6, 45
BtsCI GGATG 1 cut(s) 1220
BtsIMutI CAGTG 1 cut(s) 1094
BveI ACCTGC 1 cut(s) 803
Cac8I GCNNGC 4 cut(s) 472, 604, 739, 921
CciI TCATGA 1 cut(s) 54
CfoI GCGC 1 cut(s) 596
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 3 cut(s) 61, 468, 922
CseI GACGC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 1177
CviQI GTAC 1 cut(s) 1177
DdeI CTNAG 6 cut(s) 246, 296, 511, 909, 1041, 1210
DpnI GATC 9 cut(s) 305, 565, 575, 675, 859, 887, 1010, 1075, 1145
DpnII GATC 9 cut(s) 303, 563, 573, 673, 857, 885, 1008, 1073, 1143
DriI GACNNNNNGTC 1 cut(s) 1114
EaeI YGGCCR 2 cut(s) 3, 147
Eam1105I GACNNNNNGTC 1 cut(s) 1114
Ecl136II GAGCTC 2 cut(s) 52, 741
Eco130I CCWWGG 4 cut(s) 6, 45, 226, 750
Eco24I GRGCYC 2 cut(s) 54, 743
Eco47I GGWCC 1 cut(s) 61
Eco47III AGCGCT 1 cut(s) 595
Eco53kI GAGCTC 2 cut(s) 52, 741
Eco57I CTGAAG 3 cut(s) 566, 618, 1132
EcoICRI GAGCTC 2 cut(s) 52, 741
EcoO109I RGGNCCY 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 924
EcoT14I CCWWGG 4 cut(s) 6, 45, 226, 750
EcoT22I ATGCAT 1 cut(s) 975
EcoT38I GRGCYC 2 cut(s) 54, 743
ErhI CCWWGG 4 cut(s) 6, 45, 226, 750
FalI AAGNNNNNCTT 4 cut(s) 591, 623, 1193, 1225
FaqI GGGAC 1 cut(s) 245
FauI CCCGC 1 cut(s) 579
FauNDI CATATG 1 cut(s) 1104
FbaI TGATCA 1 cut(s) 885
FokI GGATG 1 cut(s) 1227
FriOI GRGCYC 2 cut(s) 54, 743
FspBI CTAG 1 cut(s) 710
GlaI GCGC 1 cut(s) 595
HaeII RGCGCY 1 cut(s) 597
HaeIII GGCC 4 cut(s) 5, 149, 470, 923
HapII CCGG 2 cut(s) 81, 146
HgaI GACGC 1 cut(s) 73
HhaI GCGC 1 cut(s) 596
Hin1I GRCGYC 1 cut(s) 84
Hin6I GCGC 1 cut(s) 594
HinP1I GCGC 1 cut(s) 594
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 5 cut(s) 162, 233, 527, 554, 848
HpaII CCGG 2 cut(s) 81, 146
HphI GGTGA 6 cut(s) 377, 488, 536, 1015, 1025, 1090
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 6 cut(s) 32, 247, 268, 451, 514, 718
Hpy188III TCNNGA 8 cut(s) 55, 109, 199, 628, 772, 845, 861, 952
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 1 cut(s) 1126
HpyAV CCTTC 7 cut(s) 52, 273, 515, 617, 793, 1107, 1195
HpyCH4III ACNGT 2 cut(s) 1098, 1176
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 8 cut(s) 157, 215, 818, 880, 973, 1094, 1102, 1156
HpyF10VI GCNNNNNNNGC 2 cut(s) 738, 809
HpyF3I CTNAG 6 cut(s) 246, 296, 511, 909, 1041, 1210
HpySE526I ACGT 1 cut(s) 97
Hsp92I GRCGYC 1 cut(s) 84
HspAI GCGC 1 cut(s) 594
KpnI GGTACC 1 cut(s) 1180
Ksp22I TGATCA 1 cut(s) 885
Kzo9I GATC 9 cut(s) 303, 563, 573, 673, 857, 885, 1008, 1073, 1143
LmnI GCTCC 3 cut(s) 49, 706, 1092
LweI GCATC 3 cut(s) 23, 788, 960
MaeI CTAG 1 cut(s) 710
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 5 cut(s) 67, 85, 457, 524, 891
MalI GATC 9 cut(s) 305, 565, 575, 675, 859, 887, 1010, 1075, 1145
MboI GATC 9 cut(s) 303, 563, 573, 673, 857, 885, 1008, 1073, 1143
MfeI CAATTG 1 cut(s) 804
MflI RGATCY 2 cut(s) 857, 1143
MhlI GDGCHC 2 cut(s) 54, 743
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 169, 256, 646, 804, 1027, 1162, 1227
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 227, 521, 548, 857
MmeI TCCRAC 2 cut(s) 684, 1032
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 975
MroXI GAANNNNTTC 4 cut(s) 116, 291, 1117, 1145
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 335, 534
MslI CAYNNNNRTG 2 cut(s) 305, 950
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 586
MspI CCGG 2 cut(s) 81, 146
MspR9I CCNGG 2 cut(s) 146, 926
MunI CAATTG 1 cut(s) 804
MvaI CCWGG 1 cut(s) 926
MwoI GCNNNNNNNGC 2 cut(s) 738, 809
NciI CCSGG 1 cut(s) 146
NcoI CCATGG 2 cut(s) 6, 45
NdeI CATATG 1 cut(s) 1104
NdeII GATC 9 cut(s) 303, 563, 573, 673, 857, 885, 1008, 1073, 1143
NlaIV GGNNCC 2 cut(s) 63, 1178
NmuCI GTSAC 2 cut(s) 85, 524
NsiI ATGCAT 1 cut(s) 975
NspI RCATGY 2 cut(s) 144, 977
NspV TTCGAA 1 cut(s) 959
PagI TCATGA 1 cut(s) 54
PaqCI CACCTGC 1 cut(s) 803
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PdmI GAANNNNTTC 4 cut(s) 116, 291, 1117, 1145
PfeI GAWTC 1 cut(s) 162
PleI GAGTC 4 cut(s) 227, 521, 548, 856
PpsI GAGTC 4 cut(s) 227, 521, 548, 856
PpuMI RGGWCCY 1 cut(s) 61
Psp124BI GAGCTC 2 cut(s) 54, 743
Psp5II RGGWCCY 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 924
PspGI CCWGG 1 cut(s) 924
PspN4I GGNNCC 2 cut(s) 63, 1178
PspPI GGNCC 3 cut(s) 61, 468, 922
PspPPI RGGWCCY 1 cut(s) 61
PsuI RGATCY 2 cut(s) 857, 1143
RsaI GTAC 1 cut(s) 1178
RsaNI GTAC 1 cut(s) 1177
RseI CAYNNNNRTG 2 cut(s) 305, 950
SacI GAGCTC 2 cut(s) 54, 743
SaqAI TTAA 2 cut(s) 335, 534
Sau3AI GATC 9 cut(s) 303, 563, 573, 673, 857, 885, 1008, 1073, 1143
Sau96I GGNCC 3 cut(s) 61, 468, 922
SchI GAGTC 4 cut(s) 227, 521, 548, 857
ScrFI CCNGG 2 cut(s) 146, 926
SduI GDGCHC 2 cut(s) 54, 743
SfaNI GCATC 3 cut(s) 23, 788, 960
SfuI TTCGAA 1 cut(s) 959
SgrAI CRCCGGYG 1 cut(s) 80
SinI GGWCC 1 cut(s) 61
SmiMI CAYNNNNRTG 2 cut(s) 305, 950
SmlI CTYRAG 2 cut(s) 197, 772
SmoI CTYRAG 2 cut(s) 197, 772
Sse9I AATT 7 cut(s) 169, 256, 646, 804, 1027, 1162, 1227
SsiI CCGC 1 cut(s) 586
SspMI CTAG 1 cut(s) 710
SstI GAGCTC 2 cut(s) 54, 743
StyD4I CCNGG 2 cut(s) 144, 924
StyI CCWWGG 4 cut(s) 6, 45, 226, 750
TaaI ACNGT 2 cut(s) 1098, 1176
TaiI ACGT 1 cut(s) 100
TaqI TCGA 7 cut(s) 108, 165, 174, 236, 254, 959, 1121
TasI AATT 7 cut(s) 169, 256, 646, 804, 1027, 1162, 1227
TfiI GAWTC 1 cut(s) 162
Tru1I TTAA 2 cut(s) 335, 534
Tru9I TTAA 2 cut(s) 335, 534
TscAI CASTG 1 cut(s) 1101
TseFI GTSAC 2 cut(s) 85, 524
Tsp45I GTSAC 2 cut(s) 85, 524
TspDTI ATGAA 3 cut(s) 71, 376, 1155
TspGWI ACGGA 1 cut(s) 1125
TspRI CASTG 1 cut(s) 1101
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 4 cut(s) 169, 256, 1162, 1227
XceI RCATGY 2 cut(s) 144, 977
XcmI CCANNNNNNNNNTGG 2 cut(s) 358, 565
XmnI GAANNNNTTC 4 cut(s) 116, 291, 1117, 1145
XspI CTAG 1 cut(s) 710
Zsp2I ATGCAT 1 cut(s) 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.