Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0016385

Physical Location & Seq

Genomic Coordinates Forward (+)

32113449 .. 32114698

Gene Structure 1250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G014370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGCAATGGATTTTCCTCCATACCATTTCAGATGCCCCATTTCCATGGATCTCATGAAGGACCCTGTTACCATCTCCACCGGCGTCACTTACGAACGTGTCAACATCGAGAAATGGTTCTTCACATACAAGAAGAAAACATGCCCGGCCACAATGCAAAGAATCTCAAATTTCGACACCATACCAAATCACACCCTCAAGAGGCTCATTCTTGCATGGCAAAACCAAGGGGACTCGAAATCATCTTCATCTTCGTCATGTGAGTTATTGAATTCGCATTCGGATAAACATGAGGAGATTAAAGCACTTCTCAGCACAATCATGTCGTCCCCATTCAAGGTCAGTTCCTTAAAGAAACTTCGTTCGATTATTGACATGGGTGAAGAGACGAGAAATGACTTCATTAGTTCTAATGGAGTGGAAGTTCTTGTTCAAATACTTGATCAAATCCTCACAGAGAACTCGGATTTCATAACATTTCGGGCTTGCGAGGAGGCTCTTTGTATTCTTCACCAACTTCCCATCTCGGAAGAAGAAGGTAACACTTTTAAGTTGTTGTCAAAACAAGATTCCACCAGATCAATGACAATCATGCTTCAGCGCGGGAGCGCTGAAGCACGCCTTCACACCATTACCATATTCAAGAAGATGGCAAAAACCAATTACGACTGGAACTTTGTGATACAAGATCAAGGTATAGATTTCTTCAAATCCTTGTTGGAGCTTGTTTCGGACGAAATATGTAGCAAAGCAAGCTCATGTGCCTTGGAAGTTCTGATAGAAATTTTGAGAGCATCAAAGAAAAACAAGCTGAGAGCAATTGAAGCAGGTGCCGTTTGTGTCCTAATAGAGCTATTGCAAGAGTCCAGCAGATCCAGATGTGAGAAAATGTTGCAAGTGATCAAGTTCCTGTGTGAATGTGCTGAGGGGAGGCAGGCCTTGGTGGAACATGGCATGGGCATTGTAGCGATTTCGAAGAAGATTATGCACGTTTCCAATGTTGCCACCAAGATTGGGGTGAAGATCATGTGGTTGGTTTGTAATTTTCACCCGACAGAGAAGAAGCTTCTTGCACTGTTGCATATGGATGGCAGGTCTTCGACGAAGGATAAGGTTGTGAAGATCTTCAAGATGCATGGAAATTCATGGAAACGGTACCCTTGCTACCCTTCTGATTTGAAGGGCTACTTGGGATGTGTGAATGAACATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

404

Amino Acids

45.87

Weight (kDa)

8.61

Isoelectric Point (pI)

49.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	7 - 76	3.7e-15	U-box domain
ARM_PUB	PF25598	100 - 391	8.3e-47	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016385)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08000
malus_domestica	MD02G1229800.v1.1 MD07G1083300.v1.1
prunus_persica	Prupe.2G109000_v2.0.a1
pyrus_communis	pycom07g06670
rosa_chinensis	RchiOBHm_Chr1g0341311
rosa_laevigata	RLG00000029083
rosa_multiflora	Rmu_sc0004092.1_g000049
rosa_roxburghii	Rroxscaffold_4G00311950
rosa_rugosa	Rorug01G0157700.1
rosa_samantha	Rh1AG172300 Rh1BG140300 Rh1CG160400 Rh1DG172600
rosa_wichuraiana	Rw1G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	818
Acc36I	ACCTGC	2 cut(s)	818, 1083
Acc65I	GGTACC	1 cut(s)	1155
AccB1I	GGYRCC	2 cut(s)	830, 1155
AccII	CGCG	1 cut(s)	603
AciI	CCGC	1 cut(s)	603
AclWI	GGATC	2 cut(s)	57, 867
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	4 cut(s)	169, 271, 783, 1141
AcuI	CTGAAG	2 cut(s)	581, 633
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	1157
AfeI	AGCGCT	1 cut(s)	610
AfiI	CCNNNNNNNGG	3 cut(s)	201, 337, 1014
AflIII	ACRYGT	1 cut(s)	97
AgsI	TTSAA	8 cut(s)	271, 337, 434, 643, 709, 824, 1129, 1180
AjuI	GAANNNNNNNTTGG	2 cut(s)	1172, 1204
AloI	GAACNNNNNNTCC	2 cut(s)	408, 440
AluBI	AGCT	5 cut(s)	724, 756, 811, 853, 1066
AluI	AGCT	5 cut(s)	724, 756, 811, 853, 1066
Alw26I	GTCTC	1 cut(s)	380
AlwI	GGATC	2 cut(s)	57, 867
Aor51HI	AGCGCT	1 cut(s)	610
AoxI	GGCC	2 cut(s)	147, 936
ApoI	RAATTY	4 cut(s)	169, 271, 783, 1141
ArsI	GACNNNNNNTTYG	2 cut(s)	659, 691
Asp700I	GAANNNNTTC	2 cut(s)	116, 1124
Asp718I	GGTACC	1 cut(s)	1155
AspLEI	GCGC	2 cut(s)	603, 611
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	4 cut(s)	392, 503, 1030, 1040
AsuII	TTCGAA	1 cut(s)	974
AvaII	GGWCC	1 cut(s)	61
BanI	GGYRCC	2 cut(s)	830, 1155
BbsI	GAAGAC	1 cut(s)	1089
BbvCI	CCTCAGC	1 cut(s)	924
BccI	CCATC	4 cut(s)	80, 530, 643, 1082
BceAI	ACGGC	1 cut(s)	818
BclI	TGATCA	2 cut(s)	442, 900
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	380
BfoI	RGCGCY	1 cut(s)	612
BfuAI	ACCTGC	2 cut(s)	818, 1083
BglII	AGATCT	1 cut(s)	1122
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	3 cut(s)	63, 832, 1157
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	3 cut(s)	23, 803, 1122
BpiI	GAAGAC	1 cut(s)	1089
Bpu10I	CCTNAGC	1 cut(s)	924
Bpu14I	TTCGAA	1 cut(s)	974
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	4 cut(s)	45, 226, 765, 939
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 337, 1014
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	674
Bse3DI	GCAATG	2 cut(s)	12, 1207
BseDI	CCNNGG	4 cut(s)	45, 226, 765, 939
BseGI	GGATG	2 cut(s)	1093, 1199
BseLI	CCNNNNNNNGG	3 cut(s)	201, 337, 1014
BseMI	GCAATG	2 cut(s)	12, 1207
BseMII	CTCAG	3 cut(s)	325, 803, 915
BseNI	ACTGG	1 cut(s)	674
BseRI	GAGGAG	2 cut(s)	308, 506
Bsh1236I	CGCG	1 cut(s)	603
BshFI	GGCC	2 cut(s)	149, 938
BshNI	GGYRCC	2 cut(s)	830, 1155
BsiSI	CCGG	2 cut(s)	81, 146
BslFI	GGGAC	2 cut(s)	245, 313
BslI	CCNNNNNNNGG	3 cut(s)	201, 337, 1014
BsmAI	GTCTC	1 cut(s)	380
BsmBI	CGTCTC	1 cut(s)	380
BsmFI	GGGAC	2 cut(s)	245, 313
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	149, 938
Bsp119I	TTCGAA	1 cut(s)	974
Bsp143I	GATC	8 cut(s)	49, 442, 578, 688, 872, 900, 1023, 1122
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	1 cut(s)	603
BspANI	GGCC	2 cut(s)	149, 938
BspCNI	CTCAG	3 cut(s)	324, 804, 916
BspFNI	CGCG	1 cut(s)	603
BspHI	TCATGA	1 cut(s)	54
BspLI	GGNNCC	3 cut(s)	63, 832, 1157
BspMI	ACCTGC	2 cut(s)	818, 1083
BspPI	GGATC	2 cut(s)	57, 867
BspT104I	TTCGAA	1 cut(s)	974
BspT107I	GGYRCC	2 cut(s)	830, 1155
BsrDI	GCAATG	2 cut(s)	12, 1207
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	674
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	4 cut(s)	45, 226, 765, 939
BssMI	GATC	8 cut(s)	49, 442, 578, 688, 872, 900, 1023, 1122
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	4 cut(s)	45, 226, 765, 939
Bst4CI	ACNGT	2 cut(s)	1077, 1155
Bst6I	CTCTTC	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	974
BstC8I	GCNNGC	4 cut(s)	487, 619, 754, 936
BstDEI	CTNAG	3 cut(s)	311, 812, 924
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	1093, 1199
BstFNI	CGCG	1 cut(s)	603
BstH2I	RGCGCY	1 cut(s)	612
BstHHI	GCGC	2 cut(s)	603, 611
BstKTI	GATC	8 cut(s)	52, 445, 581, 691, 875, 903, 1026, 1125
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	8 cut(s)	49, 442, 578, 688, 872, 900, 1023, 1122
BstMWI	GCNNNNNNNGC	2 cut(s)	753, 824
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	603
BstV2I	GAAGAC	1 cut(s)	1089
BstX2I	RGATCY	3 cut(s)	49, 872, 1122
BstXI	CCANNNNNNTGG	1 cut(s)	46
BstYI	RGATCY	3 cut(s)	49, 872, 1122
BsuRI	GGCC	2 cut(s)	149, 938
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	1093, 1199
BtsIMutI	CAGTG	1 cut(s)	1073
BveI	ACCTGC	2 cut(s)	818, 1083
Cac8I	GCNNGC	4 cut(s)	487, 619, 754, 936
CciI	TCATGA	1 cut(s)	54
CfoI	GCGC	2 cut(s)	603, 611
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	61
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	1156
CspCI	CAANNNNNGTGG	2 cut(s)	994, 1029
CviQI	GTAC	1 cut(s)	1156
DdeI	CTNAG	3 cut(s)	311, 812, 924
DpnI	GATC	8 cut(s)	51, 444, 580, 690, 874, 902, 1025, 1124
DpnII	GATC	8 cut(s)	49, 442, 578, 688, 872, 900, 1023, 1122
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco130I	CCWWGG	4 cut(s)	45, 226, 765, 939
Eco147I	AGGCCT	1 cut(s)	938
Eco47I	GGWCC	1 cut(s)	61
Eco47III	AGCGCT	1 cut(s)	610
Eco57I	CTGAAG	2 cut(s)	581, 633
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	271
EcoT14I	CCWWGG	4 cut(s)	45, 226, 765, 939
EcoT22I	ATGCAT	1 cut(s)	1137
ErhI	CCWWGG	4 cut(s)	45, 226, 765, 939
Esp3I	CGTCTC	1 cut(s)	380
FalI	AAGNNNNNCTT	4 cut(s)	606, 638, 1172, 1204
FaqI	GGGAC	2 cut(s)	245, 313
FauI	CCCGC	1 cut(s)	596
FauNDI	CATATG	1 cut(s)	1083
FbaI	TGATCA	2 cut(s)	442, 900
FokI	GGATG	2 cut(s)	1100, 1206
GlaI	GCGC	2 cut(s)	602, 610
HaeII	RGCGCY	1 cut(s)	612
HaeIII	GGCC	2 cut(s)	149, 938
HapII	CCGG	2 cut(s)	81, 146
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	2 cut(s)	603, 611
Hin1I	GRCGYC	1 cut(s)	84
Hin6I	GCGC	2 cut(s)	601, 609
HinP1I	GCGC	2 cut(s)	601, 609
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	1064
HinfI	GANTC	4 cut(s)	162, 233, 569, 863
HpaII	CCGG	2 cut(s)	81, 146
HphI	GGTGA	4 cut(s)	392, 503, 1030, 1040
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	7 cut(s)	32, 283, 466, 529, 733, 777, 1174
Hpy188III	TCNNGA	6 cut(s)	55, 109, 199, 643, 876, 1129
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	1105
HpyAV	CCTTC	6 cut(s)	52, 530, 632, 1099, 1174, 1179
HpyCH4III	ACNGT	2 cut(s)	1077, 1155
HpyCH4IV	ACGT	2 cut(s)	97, 990
HpyCH4V	TGCA	8 cut(s)	157, 215, 859, 895, 988, 1073, 1081, 1135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	753, 824
HpyF3I	CTNAG	3 cut(s)	311, 812, 924
HpySE526I	ACGT	2 cut(s)	97, 990
Hsp92I	GRCGYC	1 cut(s)	84
HspAI	GCGC	2 cut(s)	601, 609
KpnI	GGTACC	1 cut(s)	1159
Ksp22I	TGATCA	2 cut(s)	442, 900
Kzo9I	GATC	8 cut(s)	49, 442, 578, 688, 872, 900, 1023, 1122
LmnI	GCTCC	2 cut(s)	606, 721
LweI	GCATC	3 cut(s)	23, 803, 1122
MaeII	ACGT	2 cut(s)	97, 990
MaeIII	GTNAC	3 cut(s)	67, 85, 539
MalI	GATC	8 cut(s)	51, 444, 580, 690, 874, 902, 1025, 1124
MboI	GATC	8 cut(s)	49, 442, 578, 688, 872, 900, 1023, 1122
MfeI	CAATTG	1 cut(s)	819
MflI	RGATCY	3 cut(s)	49, 872, 1122
MluCI	AATT	7 cut(s)	169, 271, 661, 783, 819, 1042, 1141
MlyI	GAGTC	2 cut(s)	227, 872
MmeI	TCCRAC	1 cut(s)	699
MnlI	CCTC	9 cut(s)	27, 195, 206, 286, 461, 484, 487, 919, 924
Mph1103I	ATGCAT	1 cut(s)	1137
MroXI	GAANNNNTTC	2 cut(s)	116, 1124
MseI	TTAA	3 cut(s)	300, 350, 549
MslI	CAYNNNNRTG	3 cut(s)	44, 320, 1086
MspI	CCGG	2 cut(s)	81, 146
MspR9I	CCNGG	1 cut(s)	146
MunI	CAATTG	1 cut(s)	819
Mva1269I	GAATGC	1 cut(s)	277
MvnI	CGCG	1 cut(s)	603
MwoI	GCNNNNNNNGC	2 cut(s)	753, 824
NciI	CCSGG	1 cut(s)	146
NcoI	CCATGG	1 cut(s)	45
NdeI	CATATG	1 cut(s)	1083
NdeII	GATC	8 cut(s)	49, 442, 578, 688, 872, 900, 1023, 1122
NlaIV	GGNNCC	3 cut(s)	63, 832, 1157
NmuCI	GTSAC	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	1137
NspI	RCATGY	1 cut(s)	144
NspV	TTCGAA	1 cut(s)	974
PagI	TCATGA	1 cut(s)	54
PaqCI	CACCTGC	1 cut(s)	818
PceI	AGGCCT	1 cut(s)	938
PctI	GAATGC	1 cut(s)	277
PdmI	GAANNNNTTC	2 cut(s)	116, 1124
PfeI	GAWTC	2 cut(s)	162, 569
PleI	GAGTC	2 cut(s)	227, 871
PpsI	GAGTC	2 cut(s)	227, 871
PpuMI	RGGWCCY	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	61
PspN4I	GGNNCC	3 cut(s)	63, 832, 1157
PspPI	GGNCC	1 cut(s)	61
PspPPI	RGGWCCY	1 cut(s)	61
PsuI	RGATCY	3 cut(s)	49, 872, 1122
RsaI	GTAC	1 cut(s)	1157
RsaNI	GTAC	1 cut(s)	1156
RseI	CAYNNNNRTG	3 cut(s)	44, 320, 1086
SaqAI	TTAA	3 cut(s)	300, 350, 549
Sau3AI	GATC	8 cut(s)	49, 442, 578, 688, 872, 900, 1023, 1122
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	2 cut(s)	227, 872
ScrFI	CCNGG	1 cut(s)	146
SfaNI	GCATC	3 cut(s)	23, 803, 1122
SfuI	TTCGAA	1 cut(s)	974
SgrAI	CRCCGGYG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	61
SmiMI	CAYNNNNRTG	3 cut(s)	44, 320, 1086
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	7 cut(s)	169, 271, 661, 783, 819, 1042, 1141
SseBI	AGGCCT	1 cut(s)	938
SsiI	CCGC	1 cut(s)	603
StuI	AGGCCT	1 cut(s)	938
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	4 cut(s)	45, 226, 765, 939
TaaI	ACNGT	2 cut(s)	1077, 1155
TaiI	ACGT	2 cut(s)	100, 993
TaqI	TCGA	6 cut(s)	108, 174, 236, 365, 974, 1100
TasI	AATT	7 cut(s)	169, 271, 661, 783, 819, 1042, 1141
TfiI	GAWTC	2 cut(s)	162, 569
Tru1I	TTAA	3 cut(s)	300, 350, 549
Tru9I	TTAA	3 cut(s)	300, 350, 549
TscAI	CASTG	1 cut(s)	1080
TseFI	GTSAC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	5 cut(s)	71, 237, 391, 460, 1134
TspRI	CASTG	1 cut(s)	1080
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	4 cut(s)	169, 271, 783, 1141
XceI	RCATGY	1 cut(s)	144
XmnI	GAANNNNTTC	2 cut(s)	116, 1124
Zsp2I	ATGCAT	1 cut(s)	1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.