Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016385

Physical Location & Seq

Genomic Coordinates Forward (+)

16743629 .. 16745233

Gene Structure 1605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G109000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGTTAATTTCATATCCCAAACTCTCCCTTTCATTTTGCAGTTTTTGTGCAGTGGATTTTGAGGTAGAGAGAAAAACACCTGCAGATCCGGCCATGGATTTTTCTCCATGCCACTTTAGATGTCCTATTTCCATGGAGCTCATGAAAGAGCCAGTCACCATCTCCACCGGGGTCACATACGAACGTAAGAACATAGAGAAGTGGTTCTTCACCTACAAGAAGAAAACATGCCCAGCTACAATGCAAAGCATTGAGAATTTCGGTATCATCCCAAATCACACCCTCAAGAGGCTCATCGTTTCATGGCAAAGTAATGAGGATTCTAAATCTTCTTGCTCATCACCATCTTCATCTCAATCTCAACCATGTCATTCCGCTAAACATGATGAAATACAAGCACTTCTCAGCACAATCGTGTCATCCCCATTCAAGGTAAATTCGATAAAGAAACTCCGATCCATCATCGAGATAGATGATGAGATGAAAGATGATTTTATTCAATCTAATGGAGTCGAAGTTCTTGTCCAAATCCTTGATCAAACTATCATGGAGAGCTCGGATTTCGTGACGTTTAGGGCTTGTGAGGAGGCCCTTTGTGTTCTTCAACAACTTCCTATATCAGAAGAAGGGAAGACATTTGAGTTGTTATCGAAACAAGAATCAACCAGATCAATGGCCATCATGCTTCAGCGGGGAAGCGCTGAGGCACGGCTACATACCGTTACCATATTTCGAAAGATGGCGAAAACCGAATATGATTGGAGCTTTATAGTACAAGATCAAGGTATAGATTTCTTCAAATCCTTGTTGGAGCTTGTTTCAGATGAAATATGTAGCAAAGCAAGTTCATGTGCCTTGGAAGTCTTGATTGAAATATTAAGAGCATCAAAGAAAAACAGGTTGAGGGCAATTGAAGCAGGTGCAGTTTGTGTCCTCATAGAGTTGCTGCAAGACTCCAACAGATCCAAATGTGAAAGAATGTTGCATTTGATAAAATTACTATGTGAGTGTGCTGAGGGAAGGCAGGCCTTGGTGGAGCATGGCATGGGCATTGTTGCCATTACCAAAAAAATGCTGCATGTTTCCAATGCTGCCACCAAGATTGGGGTGAAGATCATATGGCTGGTCTGTAATTTTCATCCAACTGAGAGGGTACTGGAGGAAATGTTGATGTATGGATCAGTGAAGAAGCTTCTGGCATTGTTGCACATGGATGGCAGATCTTCTACTAAAGATAAGGTGTTGAAGATCTTCAAGATGCATGGCAATTCATGGAAGCGGTACCCATGTTTCCCTTATGATTTGAAGGATTATTTGGGATTTGTGAATGATTCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

447

Amino Acids

50.58

Weight (kDa)

7.48

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016385)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08000
malus_domestica	MD02G1229800.v1.1 MD07G1083300.v1.1
prunus_persica	Prupe.2G109000_v2.0.a1
pyrus_communis	pycom07g06670
rosa_chinensis	RchiOBHm_Chr1g0341311
rosa_laevigata	RLG00000029083
rosa_multiflora	Rmu_sc0004092.1_g000049
rosa_roxburghii	Rroxscaffold_4G00311950
rosa_rugosa	Rorug01G0157700.1
rosa_samantha	Rh1AG172300 Rh1BG140300 Rh1CG160400 Rh1DG172600
rosa_wichuraiana	Rw1G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	88, 908
Acc36I	ACCTGC	2 cut(s)	88, 908
Acc65I	GGTACC	1 cut(s)	1281
AccB1I	GGYRCC	1 cut(s)	1281
AciI	CCGC	3 cut(s)	375, 691, 1279
AclWI	GGATC	4 cut(s)	80, 450, 957, 1186
AcoI	YGGCCR	2 cut(s)	90, 675
AcsI	RAATTY	2 cut(s)	256, 436
AcuI	CTGAAG	1 cut(s)	671
AfaI	GTAC	3 cut(s)	774, 1155, 1283
AfeI	AGCGCT	1 cut(s)	700
AfiI	CCNNNNNNNGG	3 cut(s)	288, 430, 1104
AgsI	TTSAA	9 cut(s)	430, 500, 605, 799, 872, 914, 1246, 1255, 1306
AjuI	GAANNNNNNNTTGG	2 cut(s)	1298, 1330
AleI	CACNNNNGTG	1 cut(s)	413
AloI	GAACNNNNNNTCC	2 cut(s)	501, 533
AluBI	AGCT	7 cut(s)	139, 236, 555, 765, 814, 1192, 1338
AluI	AGCT	7 cut(s)	139, 236, 555, 765, 814, 1192, 1338
Alw21I	GWGCWC	2 cut(s)	141, 557
AlwI	GGATC	4 cut(s)	80, 450, 957, 1186
Aor51HI	AGCGCT	1 cut(s)	700
AoxI	GGCC	4 cut(s)	90, 588, 675, 1026
ApeKI	GCWGC	3 cut(s)	946, 1075, 1091
ApoI	RAATTY	2 cut(s)	256, 436
ArsI	GACNNNNNNTTYG	2 cut(s)	507, 539
Asp700I	GAANNNNTTC	2 cut(s)	203, 1250
Asp718I	GGTACC	1 cut(s)	1281
AspLEI	GCGC	1 cut(s)	701
AspS9I	GGNCC	1 cut(s)	589
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	4 cut(s)	148, 202, 333, 1120
AsuII	TTCGAA	1 cut(s)	733
BaeI	ACNNNNGTAYC	2 cut(s)	1273, 1306
BalI	TGGCCA	1 cut(s)	677
BanI	GGYRCC	1 cut(s)	1281
BanII	GRGCYC	2 cut(s)	141, 557
BbsI	GAAGAC	1 cut(s)	638
Bbv12I	GWGCWC	2 cut(s)	141, 557
BbvCI	CCTCAGC	2 cut(s)	702, 1014
BbvI	GCAGC	3 cut(s)	933, 1062, 1078
BccI	CCATC	6 cut(s)	167, 352, 467, 686, 733, 1208
BceAI	ACGGC	1 cut(s)	725
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	1 cut(s)	169
BfaI	CTAG	1 cut(s)	1335
BfmI	CTRYAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	702
BfuAI	ACCTGC	2 cut(s)	88, 908
BglII	AGATCT	2 cut(s)	1220, 1248
BisI	GCNGC	3 cut(s)	947, 1076, 1092
BlsI	GCNGC	3 cut(s)	948, 1077, 1093
Bme1390I	CCNGG	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	589
BmiI	GGNNCC	1 cut(s)	1283
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	2 cut(s)	893, 1248
BpiI	GAAGAC	1 cut(s)	638
BpmI	CTGGAG	1 cut(s)	1178
Bpu10I	CCTNAGC	2 cut(s)	702, 1014
Bpu14I	TTCGAA	1 cut(s)	733
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	169
BsaJI	CCNNGG	5 cut(s)	93, 132, 168, 855, 1029
BsaXI	ACNNNNNCTCC	4 cut(s)	501, 531, 1151, 1181
Bsc4I	CCNNNNNNNGG	3 cut(s)	288, 430, 1104
Bse1I	ACTGG	2 cut(s)	152, 1161
BseDI	CCNNGG	5 cut(s)	93, 132, 168, 855, 1029
BseGI	GGATG	4 cut(s)	267, 419, 1138, 1219
BseLI	CCNNNNNNNGG	3 cut(s)	288, 430, 1104
BseMII	CTCAG	4 cut(s)	418, 693, 1005, 1137
BseNI	ACTGG	2 cut(s)	152, 1161
BseRI	GAGGAG	1 cut(s)	599
BseXI	GCAGC	3 cut(s)	933, 1062, 1078
BseYI	CCCAGC	1 cut(s)	232
BsgI	GTGCAG	2 cut(s)	69, 942
BshFI	GGCC	4 cut(s)	92, 590, 677, 1028
BshNI	GGYRCC	1 cut(s)	1281
BsiHKAI	GWGCWC	2 cut(s)	141, 557
BsiSI	CCGG	2 cut(s)	89, 168
BslI	CCNNNNNNNGG	3 cut(s)	288, 430, 1104
BsnI	GGCC	4 cut(s)	92, 590, 677, 1028
Bsp119I	TTCGAA	1 cut(s)	733
Bsp1286I	GDGCHC	2 cut(s)	141, 557
Bsp19I	CCATGG	2 cut(s)	93, 132
BspACI	CCGC	3 cut(s)	375, 691, 1279
BspANI	GGCC	4 cut(s)	92, 590, 677, 1028
BspCNI	CTCAG	4 cut(s)	417, 694, 1006, 1138
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	1283
BspMAI	CTGCAG	1 cut(s)	85
BspMI	ACCTGC	2 cut(s)	88, 908
BspPI	GGATC	4 cut(s)	80, 450, 957, 1186
BspT104I	TTCGAA	1 cut(s)	733
BspT107I	GGYRCC	1 cut(s)	1281
BsrI	ACTGG	2 cut(s)	152, 1161
BssECI	CCNNGG	5 cut(s)	93, 132, 168, 855, 1029
BssT1I	CCWWGG	4 cut(s)	93, 132, 855, 1029
Bst4CI	ACNGT	1 cut(s)	721
BstBI	TTCGAA	1 cut(s)	733
BstC8I	GCNNGC	1 cut(s)	1026
BstDEI	CTNAG	4 cut(s)	404, 702, 1014, 1146
BstDSI	CCRYGG	2 cut(s)	93, 132
BstF5I	GGATG	4 cut(s)	267, 419, 1138, 1219
BstH2I	RGCGCY	1 cut(s)	702
BstHHI	GCGC	1 cut(s)	701
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 914
BstNSI	RCATGY	2 cut(s)	231, 1082
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	933, 1062, 1078
BstV2I	GAAGAC	1 cut(s)	638
BstX2I	RGATCY	4 cut(s)	85, 962, 1220, 1248
BstXI	CCANNNNNNTGG	1 cut(s)	673
BstYI	RGATCY	4 cut(s)	85, 962, 1220, 1248
BsuRI	GGCC	4 cut(s)	92, 590, 677, 1028
BtgI	CCRYGG	2 cut(s)	93, 132
BtsCI	GGATG	4 cut(s)	267, 419, 1138, 1219
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	57, 1188
BveI	ACCTGC	2 cut(s)	88, 908
Cac8I	GCNNGC	1 cut(s)	1026
CciI	TCATGA	1 cut(s)	141
CfoI	GCGC	1 cut(s)	701
Cfr13I	GGNCC	1 cut(s)	589
Csp6I	GTAC	3 cut(s)	773, 1154, 1282
CspCI	CAANNNNNGTGG	2 cut(s)	1084, 1119
CviQI	GTAC	3 cut(s)	773, 1154, 1282
DdeI	CTNAG	4 cut(s)	404, 702, 1014, 1146
EaeI	YGGCCR	2 cut(s)	90, 675
Ecl136II	GAGCTC	2 cut(s)	139, 555
Eco130I	CCWWGG	4 cut(s)	93, 132, 855, 1029
Eco147I	AGGCCT	1 cut(s)	1028
Eco24I	GRGCYC	2 cut(s)	141, 557
Eco47III	AGCGCT	1 cut(s)	700
Eco53kI	GAGCTC	2 cut(s)	139, 555
Eco57I	CTGAAG	1 cut(s)	671
EcoICRI	GAGCTC	2 cut(s)	139, 555
EcoO109I	RGGNCCY	1 cut(s)	589
EcoT14I	CCWWGG	4 cut(s)	93, 132, 855, 1029
EcoT22I	ATGCAT	1 cut(s)	1263
EcoT38I	GRGCYC	2 cut(s)	141, 557
ErhI	CCWWGG	4 cut(s)	93, 132, 855, 1029
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FauI	CCCGC	1 cut(s)	684
FauNDI	CATATG	1 cut(s)	1118
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	3 cut(s)	947, 1076, 1092
FokI	GGATG	4 cut(s)	254, 406, 1125, 1226
FriOI	GRGCYC	2 cut(s)	141, 557
Fsp4HI	GCNGC	3 cut(s)	947, 1076, 1092
FspBI	CTAG	1 cut(s)	1335
GlaI	GCGC	1 cut(s)	700
GluI	GCNGC	3 cut(s)	947, 1076, 1092
GsaI	CCCAGC	1 cut(s)	236
GsuI	CTGGAG	1 cut(s)	1178
HaeII	RGCGCY	1 cut(s)	702
HaeIII	GGCC	4 cut(s)	92, 590, 677, 1028
HapII	CCGG	2 cut(s)	89, 168
HhaI	GCGC	1 cut(s)	701
Hin6I	GCGC	1 cut(s)	699
HinP1I	GCGC	1 cut(s)	699
HindIII	AAGCTT	1 cut(s)	1190
HinfI	GANTC	5 cut(s)	320, 510, 659, 953, 1331
HpaII	CCGG	2 cut(s)	89, 168
HphI	GGTGA	4 cut(s)	148, 202, 333, 1120
Hpy188I	TCNGA	4 cut(s)	455, 559, 622, 823
Hpy188III	TCNNGA	6 cut(s)	142, 286, 466, 565, 865, 1255
HpyAV	CCTTC	3 cut(s)	620, 1014, 1300
HpyCH4III	ACNGT	1 cut(s)	721
HpyCH4IV	ACGT	2 cut(s)	184, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 914
HpyF3I	CTNAG	4 cut(s)	404, 702, 1014, 1146
HpySE526I	ACGT	2 cut(s)	184, 569
HspAI	GCGC	1 cut(s)	699
KpnI	GGTACC	1 cut(s)	1285
Ksp22I	TGATCA	1 cut(s)	535
LmnI	GCTCC	4 cut(s)	136, 762, 811, 1036
Lsp1109I	GCAGC	3 cut(s)	933, 1062, 1078
LweI	GCATC	2 cut(s)	893, 1248
MaeI	CTAG	1 cut(s)	1335
MaeII	ACGT	2 cut(s)	184, 569
MaeIII	GTNAC	4 cut(s)	154, 172, 565, 721
MfeI	CAATTG	1 cut(s)	909
MflI	RGATCY	4 cut(s)	85, 962, 1220, 1248
MhlI	GDGCHC	2 cut(s)	141, 557
MlsI	TGGCCA	1 cut(s)	677
MluCI	AATT	7 cut(s)	6, 256, 436, 909, 995, 1132, 1267
MluNI	TGGCCA	1 cut(s)	677
MlyI	GAGTC	2 cut(s)	519, 947
MmeI	TCCRAC	3 cut(s)	789, 981, 1166
Mox20I	TGGCCA	1 cut(s)	677
Mph1103I	ATGCAT	1 cut(s)	1263
MroXI	GAANNNNTTC	2 cut(s)	203, 1250
MscI	TGGCCA	1 cut(s)	677
MseI	TTAA	2 cut(s)	5, 878
MslI	CAYNNNNRTG	2 cut(s)	413, 1212
Msp20I	TGGCCA	1 cut(s)	677
MspA1I	CMGCKG	1 cut(s)	691
MspI	CCGG	2 cut(s)	89, 168
MspR9I	CCNGG	1 cut(s)	169
MunI	CAATTG	1 cut(s)	909
MwoI	GCNNNNNNNGC	2 cut(s)	89, 914
NciI	CCSGG	1 cut(s)	169
NcoI	CCATGG	2 cut(s)	93, 132
NdeI	CATATG	1 cut(s)	1118
NlaIV	GGNNCC	1 cut(s)	1283
NmuCI	GTSAC	3 cut(s)	154, 172, 565
NsiI	ATGCAT	1 cut(s)	1263
NspI	RCATGY	2 cut(s)	231, 1082
NspV	TTCGAA	1 cut(s)	733
OliI	CACNNNNGTG	1 cut(s)	413
PagI	TCATGA	1 cut(s)	141
PaqCI	CACCTGC	2 cut(s)	88, 908
PceI	AGGCCT	1 cut(s)	1028
PdmI	GAANNNNTTC	2 cut(s)	203, 1250
PfeI	GAWTC	3 cut(s)	320, 659, 1331
PkrI	GCNGC	3 cut(s)	948, 1077, 1093
PleI	GAGTC	2 cut(s)	518, 947
PpsI	GAGTC	2 cut(s)	518, 947
Psp124BI	GAGCTC	2 cut(s)	141, 557
PspFI	CCCAGC	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	1283
PspPI	GGNCC	1 cut(s)	589
PstI	CTGCAG	1 cut(s)	85
PsuI	RGATCY	4 cut(s)	85, 962, 1220, 1248
RsaI	GTAC	3 cut(s)	774, 1155, 1283
RsaNI	GTAC	3 cut(s)	773, 1154, 1282
RseI	CAYNNNNRTG	2 cut(s)	413, 1212
SacI	GAGCTC	2 cut(s)	141, 557
SaqAI	TTAA	2 cut(s)	5, 878
SatI	GCNGC	3 cut(s)	947, 1076, 1092
Sau96I	GGNCC	1 cut(s)	589
SchI	GAGTC	2 cut(s)	519, 947
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	2 cut(s)	141, 557
SfaNI	GCATC	2 cut(s)	893, 1248
SfcI	CTRYAG	1 cut(s)	81
SfuI	TTCGAA	1 cut(s)	733
SmiMI	CAYNNNNRTG	2 cut(s)	413, 1212
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	7 cut(s)	6, 256, 436, 909, 995, 1132, 1267
SseBI	AGGCCT	1 cut(s)	1028
SsiI	CCGC	3 cut(s)	375, 691, 1279
SspI	AATATT	1 cut(s)	876
SspMI	CTAG	1 cut(s)	1335
SstI	GAGCTC	2 cut(s)	141, 557
StuI	AGGCCT	1 cut(s)	1028
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	4 cut(s)	93, 132, 855, 1029
TaaI	ACNGT	1 cut(s)	721
TaiI	ACGT	2 cut(s)	187, 572
TaqI	TCGA	5 cut(s)	440, 465, 513, 650, 733
TasI	AATT	7 cut(s)	6, 256, 436, 909, 995, 1132, 1267
TatI	WGTACW	1 cut(s)	772
TfiI	GAWTC	3 cut(s)	320, 659, 1331
Tru1I	TTAA	2 cut(s)	5, 878
Tru9I	TTAA	2 cut(s)	5, 878
TscAI	CASTG	2 cut(s)	57, 1188
TseFI	GTSAC	3 cut(s)	154, 172, 565
TseI	GCWGC	3 cut(s)	946, 1075, 1091
Tsp45I	GTSAC	3 cut(s)	154, 172, 565
TspRI	CASTG	2 cut(s)	57, 1188
XapI	RAATTY	2 cut(s)	256, 436
XceI	RCATGY	2 cut(s)	231, 1082
XmnI	GAANNNNTTC	2 cut(s)	203, 1250
XspI	CTAG	1 cut(s)	1335
Zsp2I	ATGCAT	1 cut(s)	1263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.