Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016385

Physical Location & Seq

Genomic Coordinates Reverse (-)

34569696 .. 34571013

Gene Structure 1318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCAATCGATTTTCCTCCATACCATTTCAGATGCCCCATTTCCATGGATCTCATGAAGGACCCTGTTACCATCTCCACCGGCGTCACTTACGAACGTGTCAACATCGAGAAATGGTTCTTCACATACAAGAAGAAAACATGCCCGGCCACAATGCAAAGAATCTCAAATTTCGACACCATACCAAATCACACCCTCAAGAGGCTCATTCTTGCATGGCAAAACCAAGGGGACTCGAAATCATCTTCATCTTCGTCATGTGAGTTATTGAATTCGCATTCGGATAAACATGAGGAGATTAAAGCACTTCTCAGCACAATCATGTCGTCCCCATTCAAGGTCAGTTCCTTAAAGAAACTTCGTTCCATTATTGACATGGGTGAAGAGACGAGAAATGACTTCATTAGTTCTAATGGAGTGGAAGTTCTTGTTCAAATACTTGATCAAATCCTCACAGAGAACTCGGATTTCATAACATTTCGGGCTTGCGAGGAGGCTCTTTGTATTCTTCACCAACTTCCCATCTCGGAAGAAGAAGGTAACACTTTTGAGTTGTTGTCAAAACAAGATTCCACCAGATCAATGACAATCATGCTTCAGCGTGGGAGCGCTCAAGCACGCCTTCACACCATTACCATATTCAAGAAGATGGCAAAAACCAATTACGACTGGAACTTTGTGATACAAGATCAAGGTATAGATTTCTTCAAATCCTTGTTGGAGCTTGTTTCGGACGAAATATGTAGCAAAGCAAGTTCATGTGCCTTGGAAGTTCTGATAGAAATTTTGAGAGCATCAAAGAAAAACAAGCTGAGGGCAATTGAATCAGGTGCTGTTTGTGTCCTAATAGAGCTATTGCCAGAGTCCAGCAGATCCAGATCAAGCAGTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

297

Amino Acids

33.62

Weight (kDa)

6.33

Isoelectric Point (pI)

60.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	7 - 76	2.2e-15	U-box domain
ARM_PUB	PF25598	100 - 292	1.3e-18	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016385)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08000
malus_domestica	MD02G1229800.v1.1 MD07G1083300.v1.1
prunus_persica	Prupe.2G109000_v2.0.a1
pyrus_communis	pycom07g06670
rosa_chinensis	RchiOBHm_Chr1g0341311
rosa_laevigata	RLG00000029083
rosa_multiflora	Rmu_sc0004092.1_g000049
rosa_roxburghii	Rroxscaffold_4G00311950
rosa_rugosa	Rorug01G0157700.1
rosa_samantha	Rh1AG172300 Rh1BG140300 Rh1CG160400 Rh1DG172600
rosa_wichuraiana	Rw1G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	57, 867
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	3 cut(s)	169, 271, 783
AcuI	CTGAAG	1 cut(s)	581
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	889
AfeI	AGCGCT	1 cut(s)	610
AfiI	CCNNNNNNNGG	2 cut(s)	201, 337
AflIII	ACRYGT	1 cut(s)	97
AgsI	TTSAA	6 cut(s)	271, 337, 434, 643, 709, 824
AloI	GAACNNNNNNTCC	2 cut(s)	408, 440
AluBI	AGCT	3 cut(s)	724, 811, 853
AluI	AGCT	3 cut(s)	724, 811, 853
Alw26I	GTCTC	1 cut(s)	380
AlwI	GGATC	2 cut(s)	57, 867
AlwNI	CAGNNNCTG	1 cut(s)	833
Aor51HI	AGCGCT	1 cut(s)	610
AoxI	GGCC	1 cut(s)	147
ApoI	RAATTY	3 cut(s)	169, 271, 783
ArsI	GACNNNNNNTTYG	2 cut(s)	659, 691
Asp700I	GAANNNNTTC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	611
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	2 cut(s)	392, 503
AvaII	GGWCC	1 cut(s)	61
BbvCI	CCTCAGC	1 cut(s)	812
BccI	CCATC	3 cut(s)	80, 530, 643
BclI	TGATCA	1 cut(s)	442
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	380
BfoI	RGCGCY	1 cut(s)	612
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	2 cut(s)	23, 803
Bpu10I	CCTNAGC	1 cut(s)	812
BpuEI	CTTGAG	2 cut(s)	182, 597
BpuMI	CCSGG	1 cut(s)	146
Bsa29I	ATCGAT	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	891
BsaBI	GATNNNNATC	1 cut(s)	877
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	45, 226, 765
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 337
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	674
Bse8I	GATNNNNATC	1 cut(s)	877
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	3 cut(s)	45, 226, 765
BseJI	GATNNNNATC	1 cut(s)	877
BseLI	CCNNNNNNNGG	2 cut(s)	201, 337
BseMII	CTCAG	2 cut(s)	325, 803
BseNI	ACTGG	1 cut(s)	674
BseRI	GAGGAG	2 cut(s)	308, 506
BshFI	GGCC	1 cut(s)	149
BshVI	ATCGAT	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	81, 146
BslFI	GGGAC	2 cut(s)	245, 313
BslI	CCNNNNNNNGG	2 cut(s)	201, 337
BsmAI	GTCTC	1 cut(s)	380
BsmBI	CGTCTC	1 cut(s)	380
BsmFI	GGGAC	2 cut(s)	245, 313
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	149
Bsp143I	GATC	6 cut(s)	49, 442, 578, 688, 872, 878
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	2 cut(s)	324, 804
BspDI	ATCGAT	1 cut(s)	9
BspHI	TCATGA	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	63
BspPI	GGATC	2 cut(s)	57, 867
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	674
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	3 cut(s)	45, 226, 765
BssMI	GATC	6 cut(s)	49, 442, 578, 688, 872, 878
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	3 cut(s)	45, 226, 765
Bst6I	CTCTTC	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	84
BstBAI	YACGTR	1 cut(s)	891
BstC8I	GCNNGC	2 cut(s)	487, 619
BstDEI	CTNAG	2 cut(s)	311, 812
BstDSI	CCRYGG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	612
BstHHI	GCGC	1 cut(s)	611
BstKTI	GATC	6 cut(s)	52, 445, 581, 691, 875, 881
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	6 cut(s)	49, 442, 578, 688, 872, 878
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	144
BstSNI	TACGTA	1 cut(s)	891
BstX2I	RGATCY	2 cut(s)	49, 872
BstXI	CCANNNNNNTGG	1 cut(s)	46
BstYI	RGATCY	2 cut(s)	49, 872
Bsu15I	ATCGAT	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	149
BsuTUI	ATCGAT	1 cut(s)	9
BtgI	CCRYGG	1 cut(s)	45
Cac8I	GCNNGC	2 cut(s)	487, 619
CaiI	CAGNNNCTG	1 cut(s)	833
CciI	TCATGA	1 cut(s)	54
CfoI	GCGC	1 cut(s)	611
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	61
ClaI	ATCGAT	1 cut(s)	9
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	888
CviJI	RGCY	7 cut(s)	149, 205, 485, 497, 724, 811, 853
CviKI_1	RGCY	7 cut(s)	149, 205, 485, 497, 724, 811, 853
CviQI	GTAC	1 cut(s)	888
DdeI	CTNAG	2 cut(s)	311, 812
DpnI	GATC	6 cut(s)	51, 444, 580, 690, 874, 880
DpnII	GATC	6 cut(s)	49, 442, 578, 688, 872, 878
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco105I	TACGTA	1 cut(s)	891
Eco130I	CCWWGG	3 cut(s)	45, 226, 765
Eco47I	GGWCC	1 cut(s)	61
Eco47III	AGCGCT	1 cut(s)	610
Eco57I	CTGAAG	1 cut(s)	581
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	271
EcoT14I	CCWWGG	3 cut(s)	45, 226, 765
ErhI	CCWWGG	3 cut(s)	45, 226, 765
Esp3I	CGTCTC	1 cut(s)	380
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FaqI	GGGAC	2 cut(s)	245, 313
FbaI	TGATCA	1 cut(s)	442
GlaI	GCGC	1 cut(s)	610
HaeII	RGCGCY	1 cut(s)	612
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	2 cut(s)	81, 146
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	611
Hin1I	GRCGYC	1 cut(s)	84
Hin6I	GCGC	1 cut(s)	609
HinP1I	GCGC	1 cut(s)	609
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	5 cut(s)	162, 233, 569, 824, 863
HpaII	CCGG	2 cut(s)	81, 146
HphI	GGTGA	2 cut(s)	392, 503
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	6 cut(s)	32, 283, 466, 529, 733, 777
Hpy188III	TCNNGA	5 cut(s)	55, 109, 199, 643, 876
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	3 cut(s)	52, 530, 632
HpyCH4IV	ACGT	2 cut(s)	97, 890
HpyCH4V	TGCA	2 cut(s)	157, 215
HpyF3I	CTNAG	2 cut(s)	311, 812
HpySE526I	ACGT	2 cut(s)	97, 890
Hsp92I	GRCGYC	1 cut(s)	84
HspAI	GCGC	1 cut(s)	609
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	6 cut(s)	49, 442, 578, 688, 872, 878
LmnI	GCTCC	2 cut(s)	606, 721
LpnPI	CCDG	9 cut(s)	78, 94, 159, 589, 655, 813, 873, 880, 889
LweI	GCATC	2 cut(s)	23, 803
MaeII	ACGT	2 cut(s)	97, 890
MaeIII	GTNAC	3 cut(s)	67, 85, 539
MalI	GATC	6 cut(s)	51, 444, 580, 690, 874, 880
MboI	GATC	6 cut(s)	49, 442, 578, 688, 872, 878
MfeI	CAATTG	1 cut(s)	819
MflI	RGATCY	2 cut(s)	49, 872
MluCI	AATT	5 cut(s)	169, 271, 661, 783, 819
MlyI	GAGTC	2 cut(s)	227, 872
MmeI	TCCRAC	1 cut(s)	699
MnlI	CCTC	8 cut(s)	27, 195, 206, 286, 461, 484, 487, 807
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	2 cut(s)	300, 350
MslI	CAYNNNNRTG	2 cut(s)	44, 320
MspI	CCGG	2 cut(s)	81, 146
MspR9I	CCNGG	1 cut(s)	146
MunI	CAATTG	1 cut(s)	819
Mva1269I	GAATGC	1 cut(s)	277
NciI	CCSGG	1 cut(s)	146
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	6 cut(s)	49, 442, 578, 688, 872, 878
NlaIV	GGNNCC	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	85
NspI	RCATGY	1 cut(s)	144
PagI	TCATGA	1 cut(s)	54
PctI	GAATGC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	3 cut(s)	162, 569, 824
PleI	GAGTC	2 cut(s)	227, 871
PpsI	GAGTC	2 cut(s)	227, 871
Ppu21I	YACGTR	1 cut(s)	891
PpuMI	RGGWCCY	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	61
PspPPI	RGGWCCY	1 cut(s)	61
PstNI	CAGNNNCTG	1 cut(s)	833
PsuI	RGATCY	2 cut(s)	49, 872
RsaI	GTAC	1 cut(s)	889
RsaNI	GTAC	1 cut(s)	888
RseI	CAYNNNNRTG	2 cut(s)	44, 320
SaqAI	TTAA	2 cut(s)	300, 350
Sau3AI	GATC	6 cut(s)	49, 442, 578, 688, 872, 878
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	2 cut(s)	227, 872
ScrFI	CCNGG	1 cut(s)	146
SetI	ASST	9 cut(s)	100, 342, 541, 697, 726, 813, 832, 855, 893
SfaNI	GCATC	2 cut(s)	23, 803
SgrAI	CRCCGGYG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	61
SmiMI	CAYNNNNRTG	2 cut(s)	44, 320
SmlI	CTYRAG	2 cut(s)	197, 612
SmoI	CTYRAG	2 cut(s)	197, 612
SnaBI	TACGTA	1 cut(s)	891
Sse9I	AATT	5 cut(s)	169, 271, 661, 783, 819
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	3 cut(s)	45, 226, 765
TaiI	ACGT	2 cut(s)	100, 893
TaqI	TCGA	4 cut(s)	9, 108, 174, 236
TasI	AATT	5 cut(s)	169, 271, 661, 783, 819
TfiI	GAWTC	3 cut(s)	162, 569, 824
Tru1I	TTAA	2 cut(s)	300, 350
Tru9I	TTAA	2 cut(s)	300, 350
TseFI	GTSAC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	5 cut(s)	71, 237, 391, 460, 747
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	3 cut(s)	169, 271, 783
XceI	RCATGY	1 cut(s)	144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.