Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0016385

Physical Location & Seq

Genomic Coordinates Forward (+)

5964619 .. 5965911

Gene Structure 1293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g06670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGAGGATCTTGAGATATCAGAGAGAAAAACACCTGCAGATCATTCAGCCATGGACGACTTTCCTCCGTACCATTTCAGATGTCCCATTTCTATGGAGCTCATGAAAGATCCCGTCACCATCTCCACTGGTGTCACCTACGAGCGTAACAACATTGAGAAATGGTTCTTCTCCTACAAGAAGAAAACTTGTCCTGCCACAATGCAAAGCGTTGAGAATTTCGACATGATTCCAAACCACACCCTCAAGAGGCTCATTGTTGCATGGCAAACCAAGGAGGATGCTAAAAAAGCTATTTGCTCAACATCATCTACACCAAGGCCTTCAAATAAACATGACGAAATTCAAGCGCATCTCAACACAATCGTGTCATCCCCATTCAAGGTAAATTCGATTAAGAAACTCCGTTCCATCATCGAGATAGATGACGAGACGAAAAATGATTTTATTCGATCAAACGGGGTCGAAGTTCTTGTCCAAATTCTTGATCAAATTCTCTGGGAGAGCTCGGATTTCACTACGTTTAGAGCTTGTGAGGAGGCTCTTTGTATTCTTCACCAACTTCCCATATTGGAAGAAGGGAAAACATTTAAATTGTTATCGAAGCAAGAATCAACCAGATCAATGGCCATCATGCTTCAGCGAGGAAGCGCTGAGGCACGGCTCCATACCATTACCATATTCAAGAAGATGGCGAAAACCCAGTATGATTGGAGCTTCGTGGTACAAGATCAAGGTATAGATTTTTTTAAATCCTTGTTGGAGCTTGTTTCGGATGAAATATGTAGCAAAGCAAGTTCATGTGCCTTGGAAGTCTTGATAGAAATATTGACAGCATCAAAGAAAAACAGGCTGAGGGCAATTGAAGCGGGTGCAGTTTGTGTCCTCATAGAGCTACTGCCAGACTCCAACAGATCCAAATGTGAGAAAATGTTACAAGTGATAAAGTTGTTATGTGAATGTGCTGAGGGAAGGCAGGCCTTGGTGGAACATGGTCTGGGCATTGTTTCCATTTCCAAAAAAATGTTGCATGTTTCCAATGCTGCCACCAAGATTGGGGTCAAGATCATATGGTTGATTTGTAATTTTCATCCGACCGAGAGGGTATTGGAGGAAATGTTGATTTGTGGACCTGTGAAGAAGCTTGTGGCATTGTTGCACATGGATGGCAGATCTTCTACAAAGGATAAGGTGGTGAAGATCTTCAAGATGCATGGAAATTCATGGAAACAATATCCATGTTTCCCTTGTAATTTGAAGGACTATTTGGGATTTGTAAATGATCCTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

431

Amino Acids

48.92

Weight (kDa)

8.26

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	23 - 92	1e-16	U-box domain
ARM_PUB	PF25598	128 - 416	5.4e-54	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016385)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08000
malus_domestica	MD02G1229800.v1.1 MD07G1083300.v1.1
prunus_persica	Prupe.2G109000_v2.0.a1
pyrus_communis	pycom07g06670
rosa_chinensis	RchiOBHm_Chr1g0341311
rosa_laevigata	RLG00000029083
rosa_multiflora	Rmu_sc0004092.1_g000049
rosa_roxburghii	Rroxscaffold_4G00311950
rosa_rugosa	Rorug01G0157700.1
rosa_samantha	Rh1AG172300 Rh1BG140300 Rh1CG160400 Rh1DG172600
rosa_wichuraiana	Rw1G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	1 cut(s)	869
AclWI	GGATC	4 cut(s)	15, 104, 909, 1277
AcoI	YGGCCR	1 cut(s)	627
AcsI	RAATTY	6 cut(s)	217, 342, 388, 480, 492, 1219
AcuI	CTGAAG	1 cut(s)	623
AfaI	GTAC	2 cut(s)	71, 726
AfeI	AGCGCT	1 cut(s)	652
AfiI	CCNNNNNNNGG	3 cut(s)	249, 382, 1056
AgsI	TTSAA	7 cut(s)	327, 347, 382, 685, 866, 1207, 1258
AjuI	GAANNNNNNNTTGG	2 cut(s)	1250, 1282
AleI	CACNNNNGTG	1 cut(s)	365
AluBI	AGCT	8 cut(s)	100, 293, 507, 530, 717, 766, 895, 1144
AluI	AGCT	8 cut(s)	100, 293, 507, 530, 717, 766, 895, 1144
Alw21I	GWGCWC	2 cut(s)	102, 509
Alw26I	GTCTC	1 cut(s)	425
AlwI	GGATC	4 cut(s)	15, 104, 909, 1277
Aor51HI	AGCGCT	1 cut(s)	652
AoxI	GGCC	3 cut(s)	320, 627, 978
ApeKI	GCWGC	1 cut(s)	1043
ApoI	RAATTY	6 cut(s)	217, 342, 388, 480, 492, 1219
ArsI	GACNNNNNNTTYG	2 cut(s)	459, 491
Asp700I	GAANNNNTTC	2 cut(s)	164, 1202
AspLEI	GCGC	2 cut(s)	352, 653
AspS9I	GGNCC	1 cut(s)	1130
AsuHPI	GGTGA	4 cut(s)	109, 127, 548, 1207
AvaII	GGWCC	1 cut(s)	1130
BalI	TGGCCA	1 cut(s)	629
BanII	GRGCYC	2 cut(s)	102, 509
Bbv12I	GWGCWC	2 cut(s)	102, 509
BbvCI	CCTCAGC	3 cut(s)	654, 854, 966
BbvI	GCAGC	1 cut(s)	1030
BccI	CCATC	5 cut(s)	128, 419, 638, 685, 1160
BceAI	ACGGC	1 cut(s)	677
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	654
BfuAI	ACCTGC	1 cut(s)	43
BglII	AGATCT	2 cut(s)	1172, 1200
BisI	GCNGC	1 cut(s)	1044
BlsI	GCNGC	1 cut(s)	1045
Bme18I	GGWCC	1 cut(s)	1130
BmgT120I	GGNCC	1 cut(s)	1130
BmiI	GGNNCC	1 cut(s)	665
BmrI	ACTGGG	1 cut(s)	697
BmsI	GCATC	4 cut(s)	271, 361, 845, 1200
BmuI	ACTGGG	1 cut(s)	697
Bpu10I	CCTNAGC	3 cut(s)	654, 854, 966
BpuEI	CTTGAG	2 cut(s)	32, 230
BsaJI	CCNNGG	5 cut(s)	51, 273, 317, 807, 981
BsaXI	ACNNNNNCTCC	2 cut(s)	1103, 1133
Bsc4I	CCNNNNNNNGG	3 cut(s)	249, 382, 1056
Bse1I	ACTGG	2 cut(s)	133, 703
BseDI	CCNNGG	5 cut(s)	51, 273, 317, 807, 981
BseGI	GGATG	5 cut(s)	286, 371, 781, 1090, 1171
BseLI	CCNNNNNNNGG	3 cut(s)	249, 382, 1056
BseMII	CTCAG	3 cut(s)	645, 845, 957
BseNI	ACTGG	2 cut(s)	133, 703
BseRI	GAGGAG	1 cut(s)	551
BseXI	GCAGC	1 cut(s)	1030
BsgI	GTGCAG	1 cut(s)	894
Bsh1285I	CGRYCG	1 cut(s)	1098
BshFI	GGCC	3 cut(s)	322, 629, 980
BsiEI	CGRYCG	1 cut(s)	1098
BsiHKAI	GWGCWC	2 cut(s)	102, 509
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	3 cut(s)	249, 382, 1056
BsmAI	GTCTC	1 cut(s)	425
BsmBI	CGTCTC	1 cut(s)	425
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	3 cut(s)	322, 629, 980
Bsp1286I	GDGCHC	2 cut(s)	102, 509
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	1 cut(s)	869
BspANI	GGCC	3 cut(s)	322, 629, 980
BspCNI	CTCAG	3 cut(s)	646, 846, 958
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	665
BspMAI	CTGCAG	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	4 cut(s)	15, 104, 909, 1277
BsrI	ACTGG	2 cut(s)	133, 703
BssECI	CCNNGG	5 cut(s)	51, 273, 317, 807, 981
BssT1I	CCWWGG	5 cut(s)	51, 273, 317, 807, 981
BstC8I	GCNNGC	1 cut(s)	978
BstDEI	CTNAG	3 cut(s)	654, 854, 966
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	5 cut(s)	286, 371, 781, 1090, 1171
BstH2I	RGCGCY	1 cut(s)	654
BstHHI	GCGC	2 cut(s)	352, 653
BstMAI	GTCTC	1 cut(s)	425
BstMCI	CGRYCG	1 cut(s)	1098
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 866
BstNSI	RCATGY	1 cut(s)	1034
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	1030
BstX2I	RGATCY	5 cut(s)	7, 109, 914, 1172, 1200
BstXI	CCANNNNNNTGG	2 cut(s)	94, 625
BstYI	RGATCY	5 cut(s)	7, 109, 914, 1172, 1200
BsuRI	GGCC	3 cut(s)	322, 629, 980
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	5 cut(s)	286, 371, 781, 1090, 1171
BtsIMutI	CAGTG	1 cut(s)	126
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	978
CciI	TCATGA	1 cut(s)	102
CfoI	GCGC	2 cut(s)	352, 653
Cfr13I	GGNCC	1 cut(s)	1130
Csp6I	GTAC	2 cut(s)	70, 725
CspCI	CAANNNNNGTGG	2 cut(s)	1036, 1071
CviQI	GTAC	2 cut(s)	70, 725
DdeI	CTNAG	3 cut(s)	654, 854, 966
DraI	TTTAAA	2 cut(s)	592, 751
EaeI	YGGCCR	1 cut(s)	627
Ecl136II	GAGCTC	2 cut(s)	100, 507
Eco130I	CCWWGG	5 cut(s)	51, 273, 317, 807, 981
Eco147I	AGGCCT	2 cut(s)	322, 980
Eco24I	GRGCYC	2 cut(s)	102, 509
Eco32I	GATATC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	1130
Eco47III	AGCGCT	1 cut(s)	652
Eco53kI	GAGCTC	2 cut(s)	100, 507
Eco57I	CTGAAG	1 cut(s)	623
EcoICRI	GAGCTC	2 cut(s)	100, 507
EcoRV	GATATC	1 cut(s)	18
EcoT14I	CCWWGG	5 cut(s)	51, 273, 317, 807, 981
EcoT22I	ATGCAT	1 cut(s)	1215
EcoT38I	GRGCYC	2 cut(s)	102, 509
ErhI	CCWWGG	5 cut(s)	51, 273, 317, 807, 981
Esp3I	CGTCTC	1 cut(s)	425
FaqI	GGGAC	1 cut(s)	69
FauI	CCCGC	1 cut(s)	862
FauNDI	CATATG	1 cut(s)	1070
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	1 cut(s)	1044
FokI	GGATG	5 cut(s)	293, 358, 788, 1077, 1178
FriOI	GRGCYC	2 cut(s)	102, 509
Fsp4HI	GCNGC	1 cut(s)	1044
GlaI	GCGC	2 cut(s)	351, 652
GluI	GCNGC	1 cut(s)	1044
HaeII	RGCGCY	1 cut(s)	654
HaeIII	GGCC	3 cut(s)	322, 629, 980
HhaI	GCGC	2 cut(s)	352, 653
Hin6I	GCGC	2 cut(s)	350, 651
HinP1I	GCGC	2 cut(s)	350, 651
HindIII	AAGCTT	1 cut(s)	1142
HinfI	GANTC	3 cut(s)	229, 611, 905
HphI	GGTGA	4 cut(s)	109, 127, 548, 1207
Hpy166II	GTNNAC	1 cut(s)	1130
Hpy188I	TCNGA	5 cut(s)	22, 80, 511, 775, 1095
Hpy188III	TCNNGA	9 cut(s)	11, 103, 247, 418, 485, 685, 817, 1063, 1207
Hpy8I	GTNNAC	1 cut(s)	1130
HpyAV	CCTTC	4 cut(s)	333, 572, 966, 1252
HpyCH4IV	ACGT	1 cut(s)	521
HpyCH4V	TGCA	7 cut(s)	38, 205, 263, 875, 1030, 1159, 1213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 866
HpyF3I	CTNAG	3 cut(s)	654, 854, 966
HpySE526I	ACGT	1 cut(s)	521
HspAI	GCGC	2 cut(s)	350, 651
Ksp22I	TGATCA	1 cut(s)	487
LmnI	GCTCC	4 cut(s)	97, 669, 714, 763
Lsp1109I	GCAGC	1 cut(s)	1030
LweI	GCATC	4 cut(s)	271, 361, 845, 1200
MaeII	ACGT	1 cut(s)	521
MaeIII	GTNAC	4 cut(s)	115, 133, 146, 933
MboII	GAAGA	9 cut(s)	160, 193, 545, 587, 700, 1150, 1167, 1195, 1210
MfeI	CAATTG	1 cut(s)	861
MflI	RGATCY	5 cut(s)	7, 109, 914, 1172, 1200
MhlI	GDGCHC	2 cut(s)	102, 509
MlsI	TGGCCA	1 cut(s)	629
MluNI	TGGCCA	1 cut(s)	629
MlyI	GAGTC	1 cut(s)	899
MmeI	TCCRAC	3 cut(s)	741, 933, 1118
Mox20I	TGGCCA	1 cut(s)	629
Mph1103I	ATGCAT	1 cut(s)	1215
MroXI	GAANNNNTTC	2 cut(s)	164, 1202
MscI	TGGCCA	1 cut(s)	629
MseI	TTAA	3 cut(s)	396, 591, 750
MslI	CAYNNNNRTG	3 cut(s)	92, 365, 1164
Msp20I	TGGCCA	1 cut(s)	629
MunI	CAATTG	1 cut(s)	861
MwoI	GCNNNNNNNGC	2 cut(s)	290, 866
NcoI	CCATGG	1 cut(s)	51
NdeI	CATATG	1 cut(s)	1070
NlaIV	GGNNCC	1 cut(s)	665
NmuCI	GTSAC	2 cut(s)	115, 133
NsiI	ATGCAT	1 cut(s)	1215
NspI	RCATGY	1 cut(s)	1034
OliI	CACNNNNGTG	1 cut(s)	365
PagI	TCATGA	1 cut(s)	102
PaqCI	CACCTGC	1 cut(s)	43
PceI	AGGCCT	2 cut(s)	322, 980
PdmI	GAANNNNTTC	2 cut(s)	164, 1202
PfeI	GAWTC	2 cut(s)	229, 611
PkrI	GCNGC	1 cut(s)	1045
PleI	GAGTC	1 cut(s)	899
PpsI	GAGTC	1 cut(s)	899
Psp124BI	GAGCTC	2 cut(s)	102, 509
PspN4I	GGNNCC	1 cut(s)	665
PspPI	GGNCC	1 cut(s)	1130
PstI	CTGCAG	1 cut(s)	40
PsuI	RGATCY	5 cut(s)	7, 109, 914, 1172, 1200
RsaI	GTAC	2 cut(s)	71, 726
RsaNI	GTAC	2 cut(s)	70, 725
RseI	CAYNNNNRTG	3 cut(s)	92, 365, 1164
SacI	GAGCTC	2 cut(s)	102, 509
SaqAI	TTAA	3 cut(s)	396, 591, 750
SatI	GCNGC	1 cut(s)	1044
Sau96I	GGNCC	1 cut(s)	1130
SchI	GAGTC	1 cut(s)	899
SduI	GDGCHC	2 cut(s)	102, 509
SfaNI	GCATC	4 cut(s)	271, 361, 845, 1200
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	1130
SmiI	ATTTAAAT	1 cut(s)	592
SmiMI	CAYNNNNRTG	3 cut(s)	92, 365, 1164
SmlI	CTYRAG	2 cut(s)	11, 245
SmoI	CTYRAG	2 cut(s)	11, 245
SseBI	AGGCCT	2 cut(s)	322, 980
SsiI	CCGC	1 cut(s)	869
SspI	AATATT	1 cut(s)	828
SstI	GAGCTC	2 cut(s)	102, 509
StuI	AGGCCT	2 cut(s)	322, 980
StyI	CCWWGG	5 cut(s)	51, 273, 317, 807, 981
SwaI	ATTTAAAT	1 cut(s)	592
TaiI	ACGT	1 cut(s)	524
TaqI	TCGA	6 cut(s)	222, 392, 417, 451, 465, 602
TaqII	GACCGA	1 cut(s)	1112
TfiI	GAWTC	2 cut(s)	229, 611
Tru1I	TTAA	3 cut(s)	396, 591, 750
Tru9I	TTAA	3 cut(s)	396, 591, 750
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	2 cut(s)	115, 133
TseI	GCWGC	1 cut(s)	1043
Tsp45I	GTSAC	2 cut(s)	115, 133
TspDTI	ATGAA	5 cut(s)	119, 789, 792, 1079, 1212
TspGWI	ACGGA	2 cut(s)	57, 395
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	1130
XapI	RAATTY	6 cut(s)	217, 342, 388, 480, 492, 1219
XceI	RCATGY	1 cut(s)	1034
XmnI	GAANNNNTTC	2 cut(s)	164, 1202
Zsp2I	ATGCAT	1 cut(s)	1215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.