FvH4_7g08030

Late embryogenesis abundant (LEA) group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017358
Physical Location & Seq
Forward (+)
7949123 .. 7950281
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08030.t1

Sequence Viewer

Length: 345 bp
ATGCAGGCTATTAAGGACAAGATCAGTGAAATGGGAGCCATGAAGCAGGTCAAGGAAGAGGCTAGGGCTGAAGAGAAGGCCGAGAAAGAAATAGCGAAAGCCCGAGCAGACATCGCTCATGAGGTGAGATTGGCAAAAGAGGCGGAAGCAGCAATGTCGCATCATGTCGCCAAGGCCGGAGAAATTGCTAGAGCCGGAGAACACATGGCGAATGAGCAGTTGGCGAAAATCGGGGGATCTGAAGCAGCGGCCAGGGCAGGAGGAGGGGGTGTTCCTAATAACGCCGCTTCTAACCCTCTTCCTACTTCCAACATGTCTCCCCCAACTTATAACAAAATGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_1

Protein Analysis

115

Amino Acids

11.95

Weight (kDa)

6.92

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_1 PF03760 1 - 64 8.1e-11 Late embryogenesis abundant (LEA) group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017358)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g08030
malus_domestica MD00G1098100.v1.1 MD02G1236800.v1.1
prunus_persica Prupe.2G109300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0341271
rosa_laevigata RLG00000029078
rosa_roxburghii Rroxscaffold_4G00311910
rosa_rugosa Rorug01G0158200.1
rosa_samantha Rh1AG172600 Rh1BG140700 Rh1CG160700 Rh1DG172900
rosa_wichuraiana Rw1G014400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 330
Acc36I ACCTGC 1 cut(s) 37
AciI CCGC 3 cut(s) 143, 248, 285
AclWI GGATC 1 cut(s) 244
AcoI YGGCCR 1 cut(s) 249
AcuI CTGAAG 2 cut(s) 90, 261
AflIII ACRYGT 1 cut(s) 312
AjnI CCWGG 1 cut(s) 251
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AloI GAACNNNNNNTCC 2 cut(s) 255, 287
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 1 cut(s) 244
Ama87I CYCGRG 1 cut(s) 102
AoxI GGCC 3 cut(s) 78, 174, 249
ApeKI GCWGC 2 cut(s) 149, 245
AsuHPI GGTGA 1 cut(s) 136
AvaI CYCGRG 1 cut(s) 102
BbvI GCAGC 2 cut(s) 161, 257
BcgI CGANNNNNNTGC 2 cut(s) 138, 172
BciT130I CCWGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 321
BfaI CTAG 2 cut(s) 63, 189
BfuAI ACCTGC 1 cut(s) 37
BisI GCNGC 4 cut(s) 150, 246, 249, 285
BlsI GCNGC 4 cut(s) 151, 247, 250, 286
Bme1390I CCNGG 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 169
BsaJI CCNNGG 2 cut(s) 171, 252
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bse3DI GCAATG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 2 cut(s) 171, 252
BseMI GCAATG 1 cut(s) 159
BseRI GAGGAG 1 cut(s) 276
BseXI GCAGC 2 cut(s) 161, 257
BshFI GGCC 3 cut(s) 80, 176, 251
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 2 cut(s) 177, 195
BsmAI GTCTC 1 cut(s) 321
BsnI GGCC 3 cut(s) 80, 176, 251
BsoBI CYCGRG 1 cut(s) 102
Bsp143I GATC 2 cut(s) 21, 236
BspACI CCGC 3 cut(s) 143, 248, 285
BspANI GGCC 3 cut(s) 80, 176, 251
BspHI TCATGA 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 37
BspPI GGATC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 159
BssECI CCNNGG 2 cut(s) 171, 252
BssMI GATC 2 cut(s) 21, 236
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 253
Bst6I CTCTTC 3 cut(s) 51, 66, 303
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 342
BstKTI GATC 2 cut(s) 24, 239
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 2 cut(s) 21, 236
BstMWI GCNNNNNNNGC 4 cut(s) 113, 140, 149, 254
BstNI CCWGG 1 cut(s) 253
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 251
BstV1I GCAGC 2 cut(s) 161, 257
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BsuRI GGCC 3 cut(s) 80, 176, 251
BtgZI GCGATG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 31
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 118
CviAII CATG 5 cut(s) 40, 119, 164, 205, 313
CviJI RGCY 9 cut(s) 8, 38, 62, 68, 80, 101, 176, 194, 251
CviKI_1 RGCY 9 cut(s) 8, 38, 62, 68, 80, 101, 176, 194, 251
DdeI CTNAG 1 cut(s) 342
DpnI GATC 2 cut(s) 23, 238
DpnII GATC 2 cut(s) 21, 236
EaeI YGGCCR 1 cut(s) 249
Eam1104I CTCTTC 3 cut(s) 51, 66, 303
EarI CTCTTC 3 cut(s) 51, 66, 303
EciI GGCGGA 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 171
Eco57I CTGAAG 2 cut(s) 90, 261
Eco88I CYCGRG 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 5 cut(s) 43, 122, 167, 208, 316
FaiI YATR 6 cut(s) 41, 120, 165, 206, 314, 330
FatI CATG 5 cut(s) 39, 118, 163, 204, 312
Fnu4HI GCNGC 4 cut(s) 150, 246, 249, 285
Fsp4HI GCNGC 4 cut(s) 150, 246, 249, 285
FspBI CTAG 2 cut(s) 63, 189
GluI GCNGC 4 cut(s) 150, 246, 249, 285
HaeIII GGCC 3 cut(s) 80, 176, 251
HapII CCGG 2 cut(s) 177, 195
Hin1II CATG 5 cut(s) 43, 122, 167, 208, 316
HpaII CCGG 2 cut(s) 177, 195
HphI GGTGA 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 140, 149, 254
HpyF3I CTNAG 1 cut(s) 342
Hsp92II CATG 5 cut(s) 43, 122, 167, 208, 316
Kzo9I GATC 2 cut(s) 21, 236
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 6 cut(s) 32, 190, 208, 238, 243, 265
Lsp1109I GCAGC 2 cut(s) 161, 257
LweI GCATC 1 cut(s) 169
MaeI CTAG 2 cut(s) 63, 189
MalI GATC 2 cut(s) 23, 238
MboI GATC 2 cut(s) 21, 236
MboII GAAGA 3 cut(s) 68, 83, 290
MflI RGATCY 1 cut(s) 236
MluCI AATT 1 cut(s) 183
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 6 cut(s) 52, 115, 133, 254, 257, 306
MseI TTAA 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 2 cut(s) 177, 195
MspR9I CCNGG 1 cut(s) 253
MvaI CCWGG 1 cut(s) 253
MwoI GCNNNNNNNGC 4 cut(s) 113, 140, 149, 254
NdeII GATC 2 cut(s) 21, 236
NlaIII CATG 5 cut(s) 43, 122, 167, 208, 316
NlaIV GGNNCC 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 106
NspI RCATGY 1 cut(s) 316
PagI TCATGA 1 cut(s) 118
PciI ACATGT 1 cut(s) 312
PkrI GCNGC 4 cut(s) 151, 247, 250, 286
PscI ACATGT 1 cut(s) 312
PsiI TTATAA 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 37
PsuI RGATCY 1 cut(s) 236
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 4 cut(s) 150, 246, 249, 285
Sau3AI GATC 2 cut(s) 21, 236
ScrFI CCNGG 1 cut(s) 253
SetI ASST 2 cut(s) 51, 126
SfaNI GCATC 1 cut(s) 169
Sse9I AATT 1 cut(s) 183
SsiI CCGC 3 cut(s) 143, 248, 285
SspMI CTAG 2 cut(s) 63, 189
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 1 cut(s) 171
TasI AATT 1 cut(s) 183
TauI GCSGC 2 cut(s) 251, 287
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 31
TseI GCWGC 2 cut(s) 149, 245
TspDTI ATGAA 1 cut(s) 56
TspRI CASTG 1 cut(s) 31
XceI RCATGY 1 cut(s) 316
XspI CTAG 2 cut(s) 63, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.