RchiOBHm_Chr1g0341271

Late embryogenesis abundant (LEA) group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017358
Physical Location & Seq
Reverse (-)
32958549 .. 32959736
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56797

Sequence Viewer

Length: 363 bp
ATGCAGGCTGTTAAGGACAAGCTTGGTGAAATGACCGCCATGAAAAAGGTCAAGGAAGAGGCTAGGGCTGAAGAGAAGGCCGAGAAAGAAATAGCTAAAGCCCGAGCAGACATAGCTCATGAGGTGAGATTGGCAAAAGAGGCGGAAGCAACAATGGTGCATCATGTCGCCAAGGCTGGAGAAATTGCTAGAACCGGAGAACAAATGGCGAATAAGCAGTTAGCCAAGCTCAGGGAATCTGATCCAGCGGCCGGGGCTGGGTCAGGGGCAGAGGCAGGACGAGGGGGTGTTCCTAATAACGCTGCTGCTAACCCTCTTCCTACTACTAACATGTCTCCCCCAACTTATAACAAAATGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_1

Protein Analysis

120

Amino Acids

12.66

Weight (kDa)

8.89

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_1 PF03760 1 - 64 4.1e-11 Late embryogenesis abundant (LEA) group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017358)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g08030
malus_domestica MD00G1098100.v1.1 MD02G1236800.v1.1
prunus_persica Prupe.2G109300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0341271
rosa_laevigata RLG00000029078
rosa_roxburghii Rroxscaffold_4G00311910
rosa_rugosa Rorug01G0158200.1
rosa_samantha Rh1AG172600 Rh1BG140700 Rh1CG160700 Rh1DG172900
rosa_wichuraiana Rw1G014400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
AciI CCGC 3 cut(s) 36, 143, 248
AclWI GGATC 1 cut(s) 236
AcoI YGGCCR 1 cut(s) 249
AcuI CTGAAG 1 cut(s) 90
AfiI CCNNNNNNNGG 3 cut(s) 231, 251, 258
AflIII ACRYGT 1 cut(s) 330
AluBI AGCT 4 cut(s) 22, 95, 116, 229
AluI AGCT 4 cut(s) 22, 95, 116, 229
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 102
AoxI GGCC 2 cut(s) 78, 249
ApeKI GCWGC 2 cut(s) 302, 305
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 38, 136
AvaI CYCGRG 1 cut(s) 102
BbvI GCAGC 2 cut(s) 289, 292
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 2 cut(s) 63, 189
BisI GCNGC 3 cut(s) 249, 303, 306
BlsI GCNGC 3 cut(s) 250, 304, 307
Bme1390I CCNGG 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 171, 252
BsaWI WCCGGW 1 cut(s) 194
Bsc4I CCNNNNNNNGG 3 cut(s) 231, 251, 258
BseDI CCNNGG 2 cut(s) 171, 252
BseLI CCNNNNNNNGG 3 cut(s) 231, 251, 258
BseMII CTCAG 1 cut(s) 244
BseX3I CGGCCG 1 cut(s) 249
BseXI GCAGC 2 cut(s) 289, 292
BseYI CCCAGC 1 cut(s) 257
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 2 cut(s) 80, 251
BsiEI CGRYCG 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 2 cut(s) 195, 252
BslI CCNNNNNNNGG 3 cut(s) 231, 251, 258
BsmAI GTCTC 1 cut(s) 339
BsnI GGCC 2 cut(s) 80, 251
BsoBI CYCGRG 1 cut(s) 102
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 3 cut(s) 36, 143, 248
BspANI GGCC 2 cut(s) 80, 251
BspCNI CTCAG 1 cut(s) 243
BspHI TCATGA 1 cut(s) 118
BspPI GGATC 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 171, 252
BssMI GATC 1 cut(s) 241
BssT1I CCWWGG 1 cut(s) 171
Bst6I CTCTTC 3 cut(s) 51, 66, 321
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 230
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 1 cut(s) 241
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 3 cut(s) 113, 140, 254
BstNSI RCATGY 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 251
BstV1I GCAGC 2 cut(s) 289, 292
BstZI CGGCCG 1 cut(s) 249
BsuRI GGCC 2 cut(s) 80, 251
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 118
CviAII CATG 4 cut(s) 40, 119, 164, 331
DdeI CTNAG 1 cut(s) 230
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 249
EagI CGGCCG 1 cut(s) 249
Eam1104I CTCTTC 3 cut(s) 51, 66, 321
EarI CTCTTC 3 cut(s) 51, 66, 321
EciI GGCGGA 1 cut(s) 158
EclXI CGGCCG 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 171
Eco52I CGGCCG 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 90
Eco88I CYCGRG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 4 cut(s) 43, 122, 167, 334
FaiI YATR 6 cut(s) 41, 113, 120, 165, 332, 348
FatI CATG 4 cut(s) 39, 118, 163, 330
Fnu4HI GCNGC 3 cut(s) 249, 303, 306
Fsp4HI GCNGC 3 cut(s) 249, 303, 306
FspBI CTAG 2 cut(s) 63, 189
GluI GCNGC 3 cut(s) 249, 303, 306
GsaI CCCAGC 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 2 cut(s) 80, 251
HapII CCGG 2 cut(s) 195, 252
Hin1II CATG 4 cut(s) 43, 122, 167, 334
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 1 cut(s) 236
HpaII CCGG 2 cut(s) 195, 252
HphI GGTGA 2 cut(s) 38, 136
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 4, 160
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 140, 254
HpyF3I CTNAG 1 cut(s) 230
Hsp92II CATG 4 cut(s) 43, 122, 167, 334
Kzo9I GATC 1 cut(s) 241
LpnPI CCDG 8 cut(s) 162, 208, 217, 243, 249, 258, 261, 265
Lsp1109I GCAGC 2 cut(s) 289, 292
LweI GCATC 1 cut(s) 169
MaeI CTAG 2 cut(s) 63, 189
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 3 cut(s) 68, 83, 308
MluCI AATT 1 cut(s) 183
MnlI CCTC 6 cut(s) 52, 115, 133, 265, 275, 324
MseI TTAA 2 cut(s) 12, 361
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 2 cut(s) 195, 252
MspR9I CCNGG 1 cut(s) 253
MwoI GCNNNNNNNGC 3 cut(s) 113, 140, 254
NciI CCSGG 1 cut(s) 253
NdeII GATC 1 cut(s) 241
NlaIII CATG 4 cut(s) 43, 122, 167, 334
NmeAIII GCCGAG 1 cut(s) 106
NspI RCATGY 1 cut(s) 334
PagI TCATGA 1 cut(s) 118
PciI ACATGT 1 cut(s) 330
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 3 cut(s) 250, 304, 307
PscI ACATGT 1 cut(s) 330
PsiI TTATAA 1 cut(s) 348
PspFI CCCAGC 1 cut(s) 257
SaqAI TTAA 2 cut(s) 12, 361
SatI GCNGC 3 cut(s) 249, 303, 306
Sau3AI GATC 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 253
SetI ASST 6 cut(s) 24, 51, 97, 118, 126, 231
SfaNI GCATC 1 cut(s) 169
Sse9I AATT 1 cut(s) 183
SsiI CCGC 3 cut(s) 36, 143, 248
SspMI CTAG 2 cut(s) 63, 189
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 1 cut(s) 171
TasI AATT 1 cut(s) 183
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 2 cut(s) 12, 361
Tru9I TTAA 2 cut(s) 12, 361
TseI GCWGC 2 cut(s) 302, 305
TspDTI ATGAA 1 cut(s) 56
XceI RCATGY 1 cut(s) 334
XspI CTAG 2 cut(s) 63, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.