Rroxscaffold_4G00311910

Late embryogenesis abundant (LEA) group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017358
Physical Location & Seq
Reverse (-)
34531140 .. 34532015
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00311910.1

Sequence Viewer

Length: 357 bp
ATGCAGGCTGTTAAGGACAAGCTTGGTGAAATGAGTGCCATGAAAAAGGTCAAGGAAAAGGCTAGGGCTGAAGAGAAGGCCGAGAAAGAAATAGCTAAAGCCCGAGCAGACATAGCTCATGAGGTGAGATTGGCAAAAGAGGCGGAAGCAACAATGGTGCATCACGTCACCAAGGCCGGAGAAATTGCTAGAACCGGAGAACAAATGGCGAATGAGCAGTTAGCCAAGCTCAAGGGATCTGATCCAGCAGCCGGGGCTGGGTCAGGGGCAGGACGAGGGGGTGTTCCTAATAACGCTGCTGCTAACCCTCTACCTACTACTAACATGTCTCCCCCAACTTATAACAAAATGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_1

Protein Analysis

118

Amino Acids

12.38

Weight (kDa)

9.4

Isoelectric Point (pI)

33.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_1 PF03760 1 - 64 3.9e-11 Late embryogenesis abundant (LEA) group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017358)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g08030
malus_domestica MD00G1098100.v1.1 MD02G1236800.v1.1
prunus_persica Prupe.2G109300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0341271
rosa_laevigata RLG00000029078
rosa_roxburghii Rroxscaffold_4G00311910
rosa_rugosa Rorug01G0158200.1
rosa_samantha Rh1AG172600 Rh1BG140700 Rh1CG160700 Rh1DG172900
rosa_wichuraiana Rw1G014400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
AciI CCGC 1 cut(s) 143
AclWI GGATC 2 cut(s) 236, 244
AcuI CTGAAG 1 cut(s) 90
AfiI CCNNNNNNNGG 2 cut(s) 251, 258
AflIII ACRYGT 1 cut(s) 324
AjiI CACGTC 1 cut(s) 166
AluBI AGCT 4 cut(s) 22, 95, 116, 229
AluI AGCT 4 cut(s) 22, 95, 116, 229
Alw26I GTCTC 1 cut(s) 333
AlwI GGATC 2 cut(s) 236, 244
Ama87I CYCGRG 1 cut(s) 102
AoxI GGCC 2 cut(s) 78, 174
ApeKI GCWGC 3 cut(s) 248, 296, 299
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 3 cut(s) 38, 136, 160
AvaI CYCGRG 1 cut(s) 102
BbvI GCAGC 3 cut(s) 260, 283, 286
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 333
BfaI CTAG 2 cut(s) 63, 189
BisI GCNGC 3 cut(s) 249, 297, 300
BlsI GCNGC 3 cut(s) 250, 298, 301
Bme1390I CCNGG 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 102
BmgBI CACGTC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 171, 252
BsaWI WCCGGW 1 cut(s) 194
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 258
BseDI CCNNGG 2 cut(s) 171, 252
BseLI CCNNNNNNNGG 2 cut(s) 251, 258
BseXI GCAGC 3 cut(s) 260, 283, 286
BseYI CCCAGC 1 cut(s) 257
BshFI GGCC 2 cut(s) 80, 176
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 3 cut(s) 177, 195, 252
BslI CCNNNNNNNGG 2 cut(s) 251, 258
BsmAI GTCTC 1 cut(s) 333
BsnI GGCC 2 cut(s) 80, 176
BsoBI CYCGRG 1 cut(s) 102
Bsp143I GATC 2 cut(s) 236, 241
BspACI CCGC 1 cut(s) 143
BspANI GGCC 2 cut(s) 80, 176
BspHI TCATGA 1 cut(s) 118
BspPI GGATC 2 cut(s) 236, 244
BssECI CCNNGG 2 cut(s) 171, 252
BssMI GATC 2 cut(s) 236, 241
BssT1I CCWWGG 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 239, 244
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 2 cut(s) 236, 241
BstMWI GCNNNNNNNGC 3 cut(s) 113, 140, 254
BstNSI RCATGY 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 251
BstV1I GCAGC 3 cut(s) 260, 283, 286
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BsuRI GGCC 2 cut(s) 80, 176
BtrI CACGTC 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 118
CviAII CATG 3 cut(s) 40, 119, 325
DpnI GATC 2 cut(s) 238, 243
DpnII GATC 2 cut(s) 236, 241
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
EciI GGCGGA 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 90
Eco88I CYCGRG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 3 cut(s) 43, 122, 328
FaiI YATR 5 cut(s) 41, 113, 120, 326, 342
FatI CATG 3 cut(s) 39, 118, 324
Fnu4HI GCNGC 3 cut(s) 249, 297, 300
Fsp4HI GCNGC 3 cut(s) 249, 297, 300
FspBI CTAG 2 cut(s) 63, 189
GluI GCNGC 3 cut(s) 249, 297, 300
GsaI CCCAGC 1 cut(s) 261
HaeIII GGCC 2 cut(s) 80, 176
HapII CCGG 3 cut(s) 177, 195, 252
Hin1II CATG 3 cut(s) 43, 122, 328
HindIII AAGCTT 1 cut(s) 20
HpaII CCGG 3 cut(s) 177, 195, 252
HphI GGTGA 3 cut(s) 38, 136, 160
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 2 cut(s) 4, 160
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 140, 254
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 3 cut(s) 43, 122, 328
Kzo9I GATC 2 cut(s) 236, 241
LpnPI CCDG 7 cut(s) 190, 208, 243, 249, 255, 258, 265
Lsp1109I GCAGC 3 cut(s) 260, 283, 286
LweI GCATC 1 cut(s) 169
MaeI CTAG 2 cut(s) 63, 189
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 166
MalI GATC 2 cut(s) 238, 243
MboI GATC 2 cut(s) 236, 241
MboII GAAGA 1 cut(s) 83
MflI RGATCY 1 cut(s) 236
MluCI AATT 1 cut(s) 183
MnlI CCTC 4 cut(s) 115, 133, 269, 318
MseI TTAA 2 cut(s) 12, 355
MspI CCGG 3 cut(s) 177, 195, 252
MspR9I CCNGG 1 cut(s) 253
MwoI GCNNNNNNNGC 3 cut(s) 113, 140, 254
NciI CCSGG 1 cut(s) 253
NdeII GATC 2 cut(s) 236, 241
NlaIII CATG 3 cut(s) 43, 122, 328
NmeAIII GCCGAG 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 166
NspI RCATGY 1 cut(s) 328
PagI TCATGA 1 cut(s) 118
PciI ACATGT 1 cut(s) 324
PkrI GCNGC 3 cut(s) 250, 298, 301
PscI ACATGT 1 cut(s) 324
PsiI TTATAA 1 cut(s) 342
PspFI CCCAGC 1 cut(s) 257
PsuI RGATCY 1 cut(s) 236
SaqAI TTAA 2 cut(s) 12, 355
SatI GCNGC 3 cut(s) 249, 297, 300
Sau3AI GATC 2 cut(s) 236, 241
ScrFI CCNGG 1 cut(s) 253
SetI ASST 8 cut(s) 24, 51, 97, 118, 126, 168, 231, 316
SfaNI GCATC 1 cut(s) 169
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 1 cut(s) 183
SsiI CCGC 1 cut(s) 143
SspMI CTAG 2 cut(s) 63, 189
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 1 cut(s) 171
TaiI ACGT 1 cut(s) 168
TasI AATT 1 cut(s) 183
Tru1I TTAA 2 cut(s) 12, 355
Tru9I TTAA 2 cut(s) 12, 355
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 3 cut(s) 248, 296, 299
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 56
XceI RCATGY 1 cut(s) 328
XspI CTAG 2 cut(s) 63, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.