FvH4_7g08230

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017209
Physical Location & Seq
Reverse (-)
8183675 .. 8185352
1678 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08230.t1

Sequence Viewer

Length: 1593 bp
ATGGCGCGCTGCATATTCGATCAAATTCATGATAAGAATGTCATCTTCTGTAATGTAATGATCAGAAGCTATGTAAACAACCGTTTGTATCATGATGCTCTTGTTTTGTTCAAAACTATGTCTGCCATTGGGTTTGATCCTGATAACTATACATACCCTTGTGTCCTTAAGGCTTGTTCGGGGTCAGATAATTTGGGGGTGGGATTGCAAATTCATGTTGCTGTTGTGAAAGTTGGGCTTGACGGGAATTTGTTTATTGGGAATGGTCTGATTGCCATGTATGGGAAATGCGGTTGTTTAGTAGAGGCTCGGCACATTTTTGATGAGATGCCATGTAGAGATGTGGTTTCGTGTAATTCTATGGTTGCTGGGTATGCACAAAATGGACGGTTCGATGATGCAATAGATGTTTGTAGGAAAATGAAGACATTGGGGATTAAACCAGATGCTGGTACCATGGCTAGCCTATGCCCAGCTGTGACCAACAGTTCATATGAGAATGTTTCGTATGTTAAGGAAATGTTTATGAAATTGGATAGATCGAGTTTGGTTTCGTGGAATGTGATGATAGCAGTGTATGTAAATAATTTGATGCCTGGTGAAGCAGTTCACCTTTTCTTACAAATGGAAAAGAGTGGAATAAAACCTGATGCAGTCACAATTGCAAGTATTCTTCCCGCTTGTGGGGATCTTTCTGCTCTGTTGCTAGGTAAGCGGATTCATGAATATATTGAGAGAAAGAGACTTATGCCAAATTTGTTATTGGAGAATGCGTTGATTGACATGTATGCTAAGTGTGGAAGTCTACAAGATGCAAGAACAGTCTTTGATGCGATGACATTTCGGGATGTTGTCTCGTGGACTTCCATGATTTCTGCATATGGTAGGAGTGGACAAGGTCATGACGCTGTGGCACTTTTTGTGAAAATGCGTGACTCAGGTGTAGTTCCTGATTCAATTGCATTTGTATCAGTTCTCGCGGCTTGCAGCCATGCGGGGTTGTTAGAGGAAGGACAATATTGCTTTAAATTGATGACTGAGGAGTATGGCATTGATCCCAGGATAGAGCACTGTGCTTGTTATGTAGATCTGTTGGGGCGTGCTGGAAGAATGGATGAGGCTTATAGTTTTGTCAACCAGATGCCACTGGAGCCTAATGAAAGAGTATGGGGTGCTCTACTTAGTGCTTGCCGGGTATACTCTAACATGAGTGTAGGACTTTTAGCTGCTGATCGCCTTTTTCAATTGGCTCCAGAGGAATCAGGTTATTATGTTTTGTTGTCAAACATTTACGCAAAAGCCGGTAAATGGCAAGACGTCGCCGCAGTCCGGTCAGTGATGAAGAGTAGAGGGATCAAGAAAATACCGGGTGTCAGCAACGTTGAACTCAAAGACCAGGTTCACACTTTTCTTGCTGGTGACAGATCACATCCTCAGTCTAAAGAGATATATGAAGAATTAGATATATTGGTAGGGAAAATGAAGGAGTTAGGTTATGTCCCTGAGACCGATTCTGCCCTTCATGACGTGGAGGAGGAGGAGAAAGAATGCCATCTTGCAGTTCACATGATTGCCATATTGCTGCGAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

531

Amino Acids

58.69

Weight (kDa)

5.74

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 12 - 59 1.7e-09 PPR repeat family
PPR_2 PF13041 113 - 154 2.4e-09 PPR repeat family
PPR PF01535 116 - 146 4.7e-07 PPR repeat
PPR_2 PF13041 183 - 228 1.1e-09 PPR repeat family
PPR PF01535 184 - 214 6.1e-06 PPR repeat
PPR_2 PF13041 282 - 330 1.7e-10 PPR repeat family
PPR PF01535 285 - 315 3.3e-08 PPR repeat
E_motif PF20431 400 - 462 1.5e-21 E motif
Eplus_motif PF20430 467 - 491 8.3e-12 E+ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49142
fragaria_vesca FvH4_7g08230
malus_domestica MD07G1283100.v1.1
prunus_persica Prupe.2G305300_v2.0.a1
pyrus_communis pycom07g25720
rosa_laevigata RLG00000029048
rosa_multiflora Rmu_sc0002200.1_g000053
rosa_roxburghii Rroxscaffold_4G00311530
rosa_rugosa Rorug01G0161000.1
rosa_samantha Rh1AG176000 Rh1BG144100
rosa_wichuraiana Rw0G004940 Rw1G014650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1320
Acc65I GGTACC 1 cut(s) 452
AccB1I GGYRCC 1 cut(s) 452
AccB7I CCANNNNNTGG 1 cut(s) 449
AccI GTMKAC 2 cut(s) 805, 1197
AccII CGCG 2 cut(s) 7, 980
AciI CCGC 6 cut(s) 291, 678, 715, 980, 995, 1323
AclI AACGTT 1 cut(s) 1380
AclWI GGATC 4 cut(s) 131, 696, 1049, 1361
AcsI RAATTY 4 cut(s) 24, 210, 247, 754
AcyI GRCGYC 1 cut(s) 1317
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 6 cut(s) 282, 449, 683, 684, 1308, 1329
AflII CTTAAG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 783
AgsI TTSAA 4 cut(s) 112, 957, 1244, 1385
AjiI CACGTC 1 cut(s) 1528
AjnI CCWGG 3 cut(s) 595, 1058, 1395
AluBI AGCT 4 cut(s) 69, 476, 1226, 1590
AluI AGCT 4 cut(s) 69, 476, 1226, 1590
Alw21I GWGCWC 2 cut(s) 1071, 1177
Alw26I GTCTC 3 cut(s) 736, 859, 1499
AlwI GGATC 4 cut(s) 131, 696, 1049, 1361
AlwNI CAGNNNCTG 1 cut(s) 449
ApeKI GCWGC 4 cut(s) 9, 987, 1226, 1582
ApoI RAATTY 4 cut(s) 24, 210, 247, 754
Asp700I GAANNNNTTC 1 cut(s) 606
Asp718I GGTACC 1 cut(s) 452
AspLEI GCGC 2 cut(s) 7, 9
AsuC2I CCSGG 2 cut(s) 1193, 1368
AsuHPI GGTGA 3 cut(s) 602, 611, 1430
AsuNHI GCTAGC 1 cut(s) 461
BanI GGYRCC 1 cut(s) 452
BauI CACGAG 1 cut(s) 856
BbsI GAAGAC 1 cut(s) 431
Bbv12I GWGCWC 2 cut(s) 1071, 1177
BbvI GCAGC 3 cut(s) 999, 1213, 1569
BccI CCATC 1 cut(s) 1560
BciT130I CCWGG 3 cut(s) 597, 1060, 1397
BclI TGATCA 1 cut(s) 60
BcnI CCSGG 2 cut(s) 1193, 1368
BcoDI GTCTC 3 cut(s) 736, 859, 1499
BfaI CTAG 2 cut(s) 462, 707
BfrI CTTAAG 1 cut(s) 167
BglII AGATCT 1 cut(s) 1087
BisI GCNGC 6 cut(s) 10, 981, 988, 1227, 1323, 1583
BlsI GCNGC 6 cut(s) 11, 982, 989, 1228, 1324, 1584
Bme1390I CCNGG 5 cut(s) 597, 1060, 1193, 1368, 1397
BmgBI CACGTC 1 cut(s) 1528
BmiI GGNNCC 3 cut(s) 454, 1152, 1251
BmrFI CCNGG 5 cut(s) 597, 1060, 1193, 1368, 1397
BmsI GCATC 9 cut(s) 85, 318, 388, 436, 582, 640, 802, 820, 1131
BmtI GCTAGC 1 cut(s) 465
BpiI GAAGAC 1 cut(s) 431
BpmI CTGGAG 2 cut(s) 1169, 1236
BpuMI CCSGG 2 cut(s) 1193, 1368
BsaHI GRCGYC 1 cut(s) 1317
BsaI GGTCTC 1 cut(s) 1499
BsaJI CCNNGG 2 cut(s) 456, 1058
BsaWI WCCGGW 1 cut(s) 1329
BsaXI ACNNNNNCTCC 2 cut(s) 758, 788
Bsc4I CCNNNNNNNGG 6 cut(s) 282, 449, 683, 684, 1308, 1329
Bse118I RCCGGY 1 cut(s) 1301
Bse1I ACTGG 1 cut(s) 1152
BseBI CCWGG 3 cut(s) 597, 1060, 1397
BseDI CCNNGG 2 cut(s) 456, 1058
BseGI GGATG 3 cut(s) 853, 1120, 1429
BseLI CCNNNNNNNGG 6 cut(s) 282, 449, 683, 684, 1308, 1329
BseMII CTCAG 4 cut(s) 951, 1029, 1448, 1494
BseNI ACTGG 1 cut(s) 1152
BsePI GCGCGC 1 cut(s) 5
BseRI GAGGAG 4 cut(s) 1055, 1547, 1550, 1553
BseXI GCAGC 3 cut(s) 999, 1213, 1569
BseYI CCCAGC 2 cut(s) 368, 472
Bsh1236I CGCG 2 cut(s) 7, 980
BshNI GGYRCC 1 cut(s) 452
BsiHKAI GWGCWC 2 cut(s) 1071, 1177
BsiSI CCGG 4 cut(s) 1192, 1302, 1330, 1367
BslFI GGGAC 1 cut(s) 1484
BslI CCNNNNNNNGG 6 cut(s) 282, 449, 683, 684, 1308, 1329
BsmAI GTCTC 3 cut(s) 736, 859, 1499
BsmFI GGGAC 1 cut(s) 1484
BsmI GAATGC 2 cut(s) 775, 1553
Bso31I GGTCTC 1 cut(s) 1499
Bsp1286I GDGCHC 2 cut(s) 1071, 1177
Bsp19I CCATGG 1 cut(s) 456
BspACI CCGC 6 cut(s) 291, 678, 715, 980, 995, 1323
BspCNI CTCAG 4 cut(s) 950, 1030, 1447, 1495
BspFNI CGCG 2 cut(s) 7, 980
BspHI TCATGA 5 cut(s) 28, 91, 721, 901, 1522
BspLI GGNNCC 3 cut(s) 454, 1152, 1251
BspOI GCTAGC 1 cut(s) 465
BspPI GGATC 4 cut(s) 131, 696, 1049, 1361
BspT107I GGYRCC 1 cut(s) 452
BspTI CTTAAG 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 1499
BsrFI RCCGGY 1 cut(s) 1301
BsrI ACTGG 1 cut(s) 1152
BssAI RCCGGY 1 cut(s) 1301
BssECI CCNNGG 2 cut(s) 456, 1058
BssHII GCGCGC 1 cut(s) 5
BssNAI GTATAC 1 cut(s) 1198
BssNI GRCGYC 1 cut(s) 1317
BssSI CACGAG 1 cut(s) 856
BssT1I CCWWGG 1 cut(s) 456
Bst1107I GTATAC 1 cut(s) 1198
Bst2BI CACGAG 1 cut(s) 856
Bst2UI CCWGG 3 cut(s) 597, 1060, 1397
Bst4CI ACNGT 5 cut(s) 83, 390, 488, 823, 1073
Bst6I CTCTTC 1 cut(s) 1337
BstACI GRCGYC 1 cut(s) 1317
BstAFI CTTAAG 1 cut(s) 167
BstC8I GCNNGC 5 cut(s) 7, 463, 985, 1101, 1189
BstDEI CTNAG 6 cut(s) 792, 937, 1038, 1181, 1434, 1503
BstDSI CCRYGG 1 cut(s) 456
BstF5I GGATG 3 cut(s) 853, 1120, 1429
BstFNI CGCG 2 cut(s) 7, 980
BstHHI GCGC 2 cut(s) 7, 9
BstMAI GTCTC 3 cut(s) 736, 859, 1499
BstMWI GCNNNNNNNGC 3 cut(s) 374, 712, 1150
BstNI CCWGG 3 cut(s) 597, 1060, 1397
BstNSI RCATGY 1 cut(s) 787
BstSCI CCNGG 5 cut(s) 595, 1058, 1191, 1366, 1395
BstUI CGCG 2 cut(s) 7, 980
BstV1I GCAGC 3 cut(s) 999, 1213, 1569
BstV2I GAAGAC 1 cut(s) 431
BstX2I RGATCY 2 cut(s) 688, 1087
BstYI RGATCY 2 cut(s) 688, 1087
BstZ17I GTATAC 1 cut(s) 1198
BtgI CCRYGG 1 cut(s) 456
BtgZI GCGATG 1 cut(s) 848
BtrI CACGTC 1 cut(s) 1528
BtsCI GGATG 3 cut(s) 853, 1120, 1429
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 4 cut(s) 579, 1069, 1145, 1341
Cac8I GCNNGC 5 cut(s) 7, 463, 985, 1101, 1189
CaiI CAGNNNCTG 1 cut(s) 449
CciI TCATGA 5 cut(s) 28, 91, 721, 901, 1522
CfoI GCGC 2 cut(s) 7, 9
Cfr10I RCCGGY 1 cut(s) 1301
CseI GACGC 1 cut(s) 914
CsiI ACCWGGT 1 cut(s) 1395
Csp6I GTAC 1 cut(s) 453
CviQI GTAC 1 cut(s) 453
DdeI CTNAG 6 cut(s) 792, 937, 1038, 1181, 1434, 1503
DraI TTTAAA 1 cut(s) 1027
Eam1104I CTCTTC 1 cut(s) 1337
EarI CTCTTC 1 cut(s) 1337
Eco130I CCWWGG 1 cut(s) 456
Eco31I GGTCTC 1 cut(s) 1499
EcoRII CCWGG 3 cut(s) 595, 1058, 1395
EcoT14I CCWWGG 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 456
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FaqI GGGAC 1 cut(s) 1484
FauI CCCGC 2 cut(s) 685, 988
FauNDI CATATG 2 cut(s) 493, 880
FbaI TGATCA 1 cut(s) 60
FblI GTMKAC 2 cut(s) 805, 1197
Fnu4HI GCNGC 6 cut(s) 10, 981, 988, 1227, 1323, 1583
FokI GGATG 3 cut(s) 860, 1127, 1416
Fsp4HI GCNGC 6 cut(s) 10, 981, 988, 1227, 1323, 1583
FspBI CTAG 2 cut(s) 462, 707
GlaI GCGC 2 cut(s) 6, 8
GluI GCNGC 6 cut(s) 10, 981, 988, 1227, 1323, 1583
GsaI CCCAGC 2 cut(s) 372, 476
GsuI CTGGAG 2 cut(s) 1169, 1236
HapII CCGG 4 cut(s) 1192, 1302, 1330, 1367
HgaI GACGC 1 cut(s) 914
HhaI GCGC 2 cut(s) 7, 9
Hin1I GRCGYC 1 cut(s) 1317
Hin6I GCGC 2 cut(s) 5, 7
HinP1I GCGC 2 cut(s) 5, 7
HincII GTYRAC 1 cut(s) 1135
HindII GTYRAC 1 cut(s) 1135
HinfI GANTC 5 cut(s) 718, 935, 953, 1259, 1511
HpaII CCGG 4 cut(s) 1192, 1302, 1330, 1367
HphI GGTGA 3 cut(s) 602, 611, 1430
Hpy166II GTNNAC 9 cut(s) 76, 610, 806, 861, 893, 1135, 1198, 1402, 1564
Hpy188I TCNGA 3 cut(s) 65, 187, 270
Hpy8I GTNNAC 9 cut(s) 76, 610, 806, 861, 893, 1135, 1198, 1402, 1564
Hpy99I CGWCG 1 cut(s) 1322
HpyAV CCTTC 3 cut(s) 1004, 1477, 1529
HpyCH4III ACNGT 5 cut(s) 83, 390, 488, 823, 1073
HpyCH4IV ACGT 3 cut(s) 1317, 1380, 1527
HpyF10VI GCNNNNNNNGC 3 cut(s) 374, 712, 1150
HpyF3I CTNAG 6 cut(s) 792, 937, 1038, 1181, 1434, 1503
HpySE526I ACGT 3 cut(s) 1317, 1380, 1527
Hsp92I GRCGYC 1 cut(s) 1317
HspAI GCGC 2 cut(s) 5, 7
KpnI GGTACC 1 cut(s) 456
Ksp22I TGATCA 1 cut(s) 60
LmnI GCTCC 2 cut(s) 1150, 1255
Lsp1109I GCAGC 3 cut(s) 999, 1213, 1569
LweI GCATC 9 cut(s) 85, 318, 388, 436, 582, 640, 802, 820, 1131
MabI ACCWGGT 1 cut(s) 1395
MaeI CTAG 2 cut(s) 462, 707
MaeII ACGT 3 cut(s) 1317, 1380, 1527
MaeIII GTNAC 4 cut(s) 478, 655, 932, 1418
MboII GAAGA 6 cut(s) 37, 436, 665, 1119, 1354, 1466
MfeI CAATTG 3 cut(s) 660, 957, 1244
MflI RGATCY 2 cut(s) 688, 1087
MhlI GDGCHC 2 cut(s) 1071, 1177
MlyI GAGTC 1 cut(s) 929
MroXI GAANNNNTTC 1 cut(s) 606
MseI TTAA 4 cut(s) 168, 438, 513, 1026
MspA1I CMGCKG 1 cut(s) 476
MspCI CTTAAG 1 cut(s) 167
MspI CCGG 4 cut(s) 1192, 1302, 1330, 1367
MspR9I CCNGG 5 cut(s) 597, 1060, 1193, 1368, 1397
MunI CAATTG 3 cut(s) 660, 957, 1244
Mva1269I GAATGC 2 cut(s) 775, 1553
MvaI CCWGG 3 cut(s) 597, 1060, 1397
MvnI CGCG 2 cut(s) 7, 980
MwoI GCNNNNNNNGC 3 cut(s) 374, 712, 1150
NciI CCSGG 2 cut(s) 1193, 1368
NcoI CCATGG 1 cut(s) 456
NdeI CATATG 2 cut(s) 493, 880
NheI GCTAGC 1 cut(s) 461
NlaIV GGNNCC 3 cut(s) 454, 1152, 1251
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 4 cut(s) 478, 655, 932, 1418
NspI RCATGY 1 cut(s) 787
PagI TCATGA 5 cut(s) 28, 91, 721, 901, 1522
PauI GCGCGC 1 cut(s) 5
PciI ACATGT 1 cut(s) 783
PctI GAATGC 2 cut(s) 775, 1553
PdmI GAANNNNTTC 1 cut(s) 606
PfeI GAWTC 4 cut(s) 718, 953, 1259, 1511
PflFI GACNNNGTC 1 cut(s) 897
PflMI CCANNNNNTGG 1 cut(s) 449
PkrI GCNGC 6 cut(s) 11, 982, 989, 1228, 1324, 1584
PleI GAGTC 1 cut(s) 929
PpsI GAGTC 1 cut(s) 929
PscI ACATGT 1 cut(s) 783
Psp1406I AACGTT 1 cut(s) 1380
Psp6I CCWGG 3 cut(s) 595, 1058, 1395
PspFI CCCAGC 2 cut(s) 368, 472
PspGI CCWGG 3 cut(s) 595, 1058, 1395
PspN4I GGNNCC 3 cut(s) 454, 1152, 1251
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 2 cut(s) 688, 1087
PsyI GACNNNGTC 1 cut(s) 897
PteI GCGCGC 1 cut(s) 5
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
SaqAI TTAA 4 cut(s) 168, 438, 513, 1026
SatI GCNGC 6 cut(s) 10, 981, 988, 1227, 1323, 1583
SchI GAGTC 1 cut(s) 929
ScrFI CCNGG 5 cut(s) 597, 1060, 1193, 1368, 1397
SduI GDGCHC 2 cut(s) 1071, 1177
SexAI ACCWGGT 1 cut(s) 1395
SfaNI GCATC 9 cut(s) 85, 318, 388, 436, 582, 640, 802, 820, 1131
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SsiI CCGC 6 cut(s) 291, 678, 715, 980, 995, 1323
SspI AATATT 1 cut(s) 1019
SspMI CTAG 2 cut(s) 462, 707
StyD4I CCNGG 5 cut(s) 595, 1058, 1191, 1366, 1395
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 5 cut(s) 83, 390, 488, 823, 1073
TaiI ACGT 3 cut(s) 1320, 1383, 1530
TaqI TCGA 3 cut(s) 18, 393, 542
TaqII GACCGA 1 cut(s) 1523
TauI GCSGC 2 cut(s) 983, 1325
TfiI GAWTC 4 cut(s) 718, 953, 1259, 1511
Tru1I TTAA 4 cut(s) 168, 438, 513, 1026
Tru9I TTAA 4 cut(s) 168, 438, 513, 1026
TscAI CASTG 4 cut(s) 579, 1076, 1152, 1341
TseFI GTSAC 4 cut(s) 478, 655, 932, 1418
TseI GCWGC 4 cut(s) 9, 987, 1226, 1582
Tsp45I GTSAC 4 cut(s) 478, 655, 932, 1418
TspRI CASTG 4 cut(s) 579, 1076, 1152, 1341
Tth111I GACNNNGTC 1 cut(s) 897
Van91I CCANNNNNTGG 1 cut(s) 449
Vha464I CTTAAG 1 cut(s) 167
XapI RAATTY 4 cut(s) 24, 210, 247, 754
XceI RCATGY 1 cut(s) 787
XmiI GTMKAC 2 cut(s) 805, 1197
XmnI GAANNNNTTC 1 cut(s) 606
XspI CTAG 2 cut(s) 462, 707
ZraI GACGTC 1 cut(s) 1318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.