pycom07g25720

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0017209
Physical Location & Seq
Reverse (-)
25940917 .. 25942953
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g25720.1

Sequence Viewer

Length: 2037 bp
ATGAGAGCCATTACTCCCATTTCCCGCCAGTTTACAACTGCCAGACAACTACCAGCCATCATAACATCCACTCGAAAAACCGAGCCTTTGCTGCAGGACCCAGTTCTTGCACACCAAGTGTTTGGTAAAATACTAGATCAAATCCCAGATATCAAAACACTGAAGAAACTCCATTCCAGCATCCTCGTCAACCAGAGTCTCCATTCGGACGCATCGCTGGGCATTAAACTCATGAGGGCCTATGCTGCTTGCGGAGAACCAGGAATCGCACGCCACATATTCGACGAAATTCCTGCGAAGAATGTTGTCTTCTTTAATGTCATGATCAGGAGCTATGTGAACAACCATTTGTACCATGATGCTCTCCTTGTTTACAAAACTATGTCTGCCAAGGGTTTTGACCCGGATAATTATACGTACCCTTGTGTGCTGAAGGCGTGTTCCGGGTCGGATAATTTGTGGGTTGGGTTGCAAATTCATGGTGCTGTTGTGAAAGTTGGCCTTGATGTGAATTTGTTTATTGGGAATGGTTTGATTGCCATGTATGGGAAATGCGGTTGTTTGGTGGAGGCTCGGAGTGTTCTTGATGAGATAACTTGTAAAGATGTGGTTTCTTGTAATTCTTTGGTTGCCGGGTATGCTCAAAATGGACGGTTCAATGATGCGTTAGAGGTTTGTAGGGAAATGGAGGCGTTCAGGCTTAAACCAGATGCTGGTACCATGGCTAGCCTATTCCCAGCTGTGTCCAACACTTCATCGGAGAACGTTTTGTATGTTAAGGATATGTTTATGAAATTGGTGAAAAAGAGTTTGGTTTCGTGGAATGTGATGATAGCGGTGTATGTGAATAATTTATTGCCCAGTGAAGCAGTTAATATTTTCTTGCAGATGGAAGCGAGTGGAATAGAGCCTGATGTAGTCACAATCGCCAGTGTTCTTCCCGCTTGTGGGGATCTTTCGGCTCTGTTGTTAGGGAAACGAATTCATGAATATGTTGAGAAAAAGAGACTCAGGCCAAATTTGTCGTTGGAGAATGCATTGATTGACATGTATGCTAAGTGTGGATGTTTACAAGATGCAAGAGAAGTATTTGATGCCATGAAATTTCCGGATGTTGTATCATGGACTTCAATGATGTCTGCATATGGTAGGTGTGGACAAGGTCGTGATGCCATGACACTCTTTAGGAAAATGCAAGAATCAGGCTTGATTCCGGATTCAATTGCATTTGTATCGGTAATGGCCGCGTGCAGCCACGCAGGATTGCTGGATGAGGGGCAGCATTACTTTAAAATGATGACTGAGGAGTACAGGATAGAGCCTAGGATAGAACACTGTGCTTGCATGGTTGATTTGTTTGGGCGTGCCGGAAAAGTGGATGAGGCCTATAGTTTTGTCAAACAGATGTCACTGGAGCCTAATGAAAGAGTGTGGGGTGCTCTGCTTAGTGCTTGCCGGGTATACTCTAACATGAACGTTGGACTTCTAGCTGCTGATCGCCTTTTCCAATTGGCTCCCGAGCAGTCAGGTTATTATGTCTTGTTATCAAACATCTATGCAAAAGCCGGTAGATGGCAAGATGTCACAACTGTCCGATCAATAATGAAGAGCCGAGGAATCAAGAAAATTCCCGGTGTCAGCAATGTTGAGCTCAACGATCAGGTCCATACTTTTCTTGCTGGTGATAGATCACATCCTCAATCTAAAGAAATACACGAAGAGTTAGACGTGTTGGTAGGGAAAATGAAGGAGTTAGGCTATATCCCTGAGACTGATTCCGCTCTCCATGATGTCGAGGAGGAGGAGAAGGAATGCCATCTAACAGTTCACAGCGAGAAGTTGGCAGTAGTGTTTGCCATTCTAAATACAGAGCCAGGGACACCGATCAGAATTACCAAGAATCTTCGTGTTTGTGGCGATTGTCATATTGCAATTAAGCTCATTTCCAAAATAGCGGAACGGGAAATTGTTGTCAGGGATACTAATCGCTTCCACCGTTTCAAGGACGGTATATGTTCTTGCGGAGATTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

679

Amino Acids

75.52

Weight (kDa)

6.56

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 100 - 147 1.5e-10 PPR repeat family
PPR_2 PF13041 201 - 247 6e-08 PPR repeat family
PPR_2 PF13041 270 - 316 3.7e-08 PPR repeat family
PPR_3 PF13812 293 - 352 8.7e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 370 - 418 1e-10 PPR repeat family
PPR PF01535 373 - 403 9.1e-09 PPR repeat
E_motif PF20431 488 - 550 2.4e-21 E motif
Eplus_motif PF20430 555 - 580 2.1e-10 E+ motif
DYW_deaminase PF14432 586 - 678 2e-42 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49142
fragaria_vesca FvH4_7g08230
malus_domestica MD07G1283100.v1.1
prunus_persica Prupe.2G305300_v2.0.a1
pyrus_communis pycom07g25720
rosa_laevigata RLG00000029048
rosa_multiflora Rmu_sc0002200.1_g000053
rosa_roxburghii Rroxscaffold_4G00311530
rosa_rugosa Rorug01G0161000.1
rosa_samantha Rh1AG176000 Rh1BG144100
rosa_wichuraiana Rw0G004940 Rw1G014650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 716
AccB1I GGYRCC 1 cut(s) 716
AccB7I CCANNNNNTGG 1 cut(s) 713
AccBSI CCGCTC 1 cut(s) 1781
AccI GTMKAC 1 cut(s) 1461
AccII CGCG 1 cut(s) 1247
AccIII TCCGGA 2 cut(s) 1108, 1213
AciI CCGC 9 cut(s) 25, 252, 555, 836, 942, 1245, 1779, 1955, 2022
AclI AACGTT 2 cut(s) 765, 1476
AclWI GGATC 1 cut(s) 960
AcoI YGGCCR 1 cut(s) 1242
AcsI RAATTY 7 cut(s) 288, 474, 511, 981, 1018, 1103, 1626
AcuI CTGAAG 2 cut(s) 182, 452
AdeI CACNNNGTG 1 cut(s) 118
AfaI GTAC 4 cut(s) 353, 419, 718, 1310
AfiI CCNNNNNNNGG 6 cut(s) 546, 713, 947, 948, 1572, 2002
AflIII ACRYGT 2 cut(s) 1047, 1728
AgsI TTSAA 4 cut(s) 658, 1131, 1221, 2002
AjiI CACGTC 1 cut(s) 1729
AjnI CCWGG 2 cut(s) 259, 1873
AjuI GAANNNNNNNTTGG 2 cut(s) 794, 826
AluBI AGCT 5 cut(s) 333, 740, 1490, 1651, 1939
AluI AGCT 5 cut(s) 333, 740, 1490, 1651, 1939
Alw21I GWGCWC 2 cut(s) 1441, 1653
Alw26I GTCTC 3 cut(s) 203, 1000, 1763
AlwI GGATC 1 cut(s) 960
AlwNI CAGNNNCTG 1 cut(s) 713
Ama87I CYCGRG 1 cut(s) 1517
Aor13HI TCCGGA 2 cut(s) 1108, 1213
AoxI GGCC 5 cut(s) 237, 499, 1013, 1242, 1383
ApeKI GCWGC 5 cut(s) 91, 245, 1251, 1279, 1490
ApoI RAATTY 7 cut(s) 288, 474, 511, 981, 1018, 1103, 1626
Asp718I GGTACC 1 cut(s) 716
AspA2I CCTAGG 1 cut(s) 1322
AspS9I GGNCC 3 cut(s) 97, 237, 1663
AsuC2I CCSGG 5 cut(s) 404, 445, 634, 1457, 1632
AsuHPI GGTGA 2 cut(s) 811, 1694
AsuNHI GCTAGC 1 cut(s) 725
AvaI CYCGRG 1 cut(s) 1517
AvaII GGWCC 2 cut(s) 97, 1663
AvrII CCTAGG 1 cut(s) 1322
BanI GGYRCC 1 cut(s) 716
BanII GRGCYC 1 cut(s) 1653
BbsI GAAGAC 1 cut(s) 301
Bbv12I GWGCWC 2 cut(s) 1441, 1653
BbvI GCAGC 5 cut(s) 78, 232, 1263, 1291, 1477
BccI CCATC 4 cut(s) 65, 883, 1566, 1824
BcgI CGANNNNNNTGC 4 cut(s) 275, 309, 1215, 1249
BciT130I CCWGG 2 cut(s) 261, 1875
BciVI GTATCC 1 cut(s) 1972
BclI TGATCA 1 cut(s) 324
BcnI CCSGG 5 cut(s) 404, 445, 634, 1457, 1632
BcoDI GTCTC 3 cut(s) 203, 1000, 1763
BfaI CTAG 4 cut(s) 134, 726, 1323, 1487
BfmI CTRYAG 2 cut(s) 92, 1387
BfuI GTATCC 1 cut(s) 1972
BisI GCNGC 6 cut(s) 92, 246, 1245, 1252, 1280, 1491
BlnI CCTAGG 1 cut(s) 1322
BlsI GCNGC 6 cut(s) 93, 247, 1246, 1253, 1281, 1492
Bme1390I CCNGG 7 cut(s) 261, 404, 445, 634, 1457, 1632, 1875
Bme18I GGWCC 2 cut(s) 97, 1663
BmeT110I CYCGRG 1 cut(s) 1517
BmgBI CACGTC 1 cut(s) 1729
BmgT120I GGNCC 3 cut(s) 97, 237, 1663
BmiI GGNNCC 4 cut(s) 99, 718, 1416, 1515
BmrFI CCNGG 7 cut(s) 261, 404, 445, 634, 1457, 1632, 1875
BmrI ACTGGG 2 cut(s) 95, 855
BmsI GCATC 8 cut(s) 189, 221, 349, 652, 700, 1066, 1084, 1159
BmtI GCTAGC 1 cut(s) 729
BmuI ACTGGG 2 cut(s) 95, 855
BpiI GAAGAC 1 cut(s) 301
BpmI CTGGAG 1 cut(s) 1433
BpuMI CCSGG 5 cut(s) 404, 445, 634, 1457, 1632
BsaAI YACGTR 1 cut(s) 417
BsaBI GATNNNNATC 1 cut(s) 1983
BsaJI CCNNGG 5 cut(s) 390, 720, 1322, 1612, 1874
BsaWI WCCGGW 2 cut(s) 1108, 1213
Bsc4I CCNNNNNNNGG 6 cut(s) 546, 713, 947, 948, 1572, 2002
Bse118I RCCGGY 1 cut(s) 1565
Bse1I ACTGG 5 cut(s) 28, 101, 861, 930, 1416
Bse3DI GCAATG 1 cut(s) 1648
Bse8I GATNNNNATC 1 cut(s) 1983
BseAI TCCGGA 2 cut(s) 1108, 1213
BseBI CCWGG 2 cut(s) 261, 1875
BseDI CCNNGG 5 cut(s) 390, 720, 1322, 1612, 1874
BseGI GGATG 7 cut(s) 65, 180, 1070, 1117, 1276, 1384, 1693
BseJI GATNNNNATC 1 cut(s) 1983
BseLI CCNNNNNNNGG 6 cut(s) 546, 713, 947, 948, 1572, 2002
BseMI GCAATG 1 cut(s) 1648
BseMII CTCAG 3 cut(s) 1024, 1293, 1758
BseNI ACTGG 5 cut(s) 28, 101, 861, 930, 1416
BseRI GAGGAG 4 cut(s) 1319, 1811, 1814, 1817
BseXI GCAGC 5 cut(s) 78, 232, 1263, 1291, 1477
BseYI CCCAGC 2 cut(s) 217, 736
BsgI GTGCAG 1 cut(s) 1270
Bsh1236I CGCG 1 cut(s) 1247
BshFI GGCC 5 cut(s) 239, 501, 1015, 1244, 1385
BshNI GGYRCC 1 cut(s) 716
BsiHKAI GWGCWC 2 cut(s) 1441, 1653
BsiHKCI CYCGRG 1 cut(s) 1517
BsiSI CCGG 9 cut(s) 404, 444, 633, 1109, 1214, 1368, 1456, 1566, 1632
BslFI GGGAC 1 cut(s) 1891
BslI CCNNNNNNNGG 6 cut(s) 546, 713, 947, 948, 1572, 2002
BsmAI GTCTC 3 cut(s) 203, 1000, 1763
BsmFI GGGAC 1 cut(s) 1891
BsmI GAATGC 2 cut(s) 1039, 1817
BsnI GGCC 5 cut(s) 239, 501, 1015, 1244, 1385
BsoBI CYCGRG 1 cut(s) 1517
Bsp1286I GDGCHC 2 cut(s) 1441, 1653
Bsp13I TCCGGA 2 cut(s) 1108, 1213
Bsp143I GATC 8 cut(s) 136, 324, 952, 1495, 1595, 1657, 1688, 1884
Bsp19I CCATGG 1 cut(s) 720
BspACI CCGC 9 cut(s) 25, 252, 555, 836, 942, 1245, 1779, 1955, 2022
BspANI GGCC 5 cut(s) 239, 501, 1015, 1244, 1385
BspCNI CTCAG 3 cut(s) 1023, 1294, 1759
BspEI TCCGGA 2 cut(s) 1108, 1213
BspFNI CGCG 1 cut(s) 1247
BspHI TCATGA 3 cut(s) 231, 321, 985
BspLI GGNNCC 4 cut(s) 99, 718, 1416, 1515
BspMAI CTGCAG 1 cut(s) 96
BspOI GCTAGC 1 cut(s) 729
BspPI GGATC 1 cut(s) 960
BspQI GCTCTTC 1 cut(s) 1601
BspT107I GGYRCC 1 cut(s) 716
BsrBI CCGCTC 1 cut(s) 1781
BsrDI GCAATG 1 cut(s) 1648
BsrFI RCCGGY 1 cut(s) 1565
BsrI ACTGG 5 cut(s) 28, 101, 861, 930, 1416
BssAI RCCGGY 1 cut(s) 1565
BssECI CCNNGG 5 cut(s) 390, 720, 1322, 1612, 1874
BssMI GATC 8 cut(s) 136, 324, 952, 1495, 1595, 1657, 1688, 1884
BssNAI GTATAC 1 cut(s) 1462
BssT1I CCWWGG 3 cut(s) 390, 720, 1322
Bst1107I GTATAC 1 cut(s) 1462
Bst2UI CCWGG 2 cut(s) 261, 1875
Bst4CI ACNGT 6 cut(s) 654, 1337, 1591, 1825, 1997, 2009
Bst6I CTCTTC 2 cut(s) 1601, 1713
BstBAI YACGTR 1 cut(s) 417
BstC8I GCNNGC 7 cut(s) 250, 271, 727, 1249, 1342, 1365, 1453
BstDEI CTNAG 5 cut(s) 1010, 1056, 1302, 1445, 1767
BstDSI CCRYGG 1 cut(s) 720
BstF5I GGATG 7 cut(s) 65, 180, 1070, 1117, 1276, 1384, 1693
BstFNI CGCG 1 cut(s) 1247
BstKTI GATC 8 cut(s) 139, 327, 955, 1498, 1598, 1660, 1691, 1887
BstMAI GTCTC 3 cut(s) 203, 1000, 1763
BstMBI GATC 8 cut(s) 136, 324, 952, 1495, 1595, 1657, 1688, 1884
BstMWI GCNNNNNNNGC 3 cut(s) 91, 245, 638
BstNI CCWGG 2 cut(s) 261, 1875
BstNSI RCATGY 1 cut(s) 1051
BstSCI CCNGG 7 cut(s) 259, 402, 443, 632, 1455, 1630, 1873
BstSFI CTRYAG 2 cut(s) 92, 1387
BstSNI TACGTA 1 cut(s) 417
BstUI CGCG 1 cut(s) 1247
BstV1I GCAGC 5 cut(s) 78, 232, 1263, 1291, 1477
BstV2I GAAGAC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 952
BstXI CCANNNNNNTGG 1 cut(s) 122
BstYI RGATCY 1 cut(s) 952
BstZ17I GTATAC 1 cut(s) 1462
BsuI GTATCC 1 cut(s) 1972
BsuRI GGCC 5 cut(s) 239, 501, 1015, 1244, 1385
BtgI CCRYGG 1 cut(s) 720
BtgZI GCGATG 1 cut(s) 198
BtrI CACGTC 1 cut(s) 1729
BtsCI GGATG 7 cut(s) 65, 180, 1070, 1117, 1276, 1384, 1693
BtsIMutI CAGTG 5 cut(s) 158, 868, 937, 1333, 1409
Cac8I GCNNGC 7 cut(s) 250, 271, 727, 1249, 1342, 1365, 1453
CaiI CAGNNNCTG 1 cut(s) 713
CciI TCATGA 3 cut(s) 231, 321, 985
Cfr10I RCCGGY 1 cut(s) 1565
Cfr13I GGNCC 3 cut(s) 97, 237, 1663
CseI GACGC 1 cut(s) 218
Csp6I GTAC 4 cut(s) 352, 418, 717, 1309
CviQI GTAC 4 cut(s) 352, 418, 717, 1309
DdeI CTNAG 5 cut(s) 1010, 1056, 1302, 1445, 1767
DpnI GATC 8 cut(s) 138, 326, 954, 1497, 1597, 1659, 1690, 1886
DpnII GATC 8 cut(s) 136, 324, 952, 1495, 1595, 1657, 1688, 1884
DraI TTTAAA 1 cut(s) 1291
DraIII CACNNNGTG 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 1242
Eam1104I CTCTTC 2 cut(s) 1601, 1713
EarI CTCTTC 2 cut(s) 1601, 1713
Ecl136II GAGCTC 1 cut(s) 1651
Eco105I TACGTA 1 cut(s) 417
Eco130I CCWWGG 3 cut(s) 390, 720, 1322
Eco147I AGGCCT 1 cut(s) 1385
Eco24I GRGCYC 1 cut(s) 1653
Eco32I GATATC 1 cut(s) 151
Eco47I GGWCC 2 cut(s) 97, 1663
Eco53kI GAGCTC 1 cut(s) 1651
Eco57I CTGAAG 2 cut(s) 182, 452
Eco88I CYCGRG 1 cut(s) 1517
EcoICRI GAGCTC 1 cut(s) 1651
EcoO109I RGGNCCY 2 cut(s) 97, 237
EcoRI GAATTC 1 cut(s) 981
EcoRII CCWGG 2 cut(s) 259, 1873
EcoRV GATATC 1 cut(s) 151
EcoT14I CCWWGG 3 cut(s) 390, 720, 1322
EcoT22I ATGCAT 1 cut(s) 1039
EcoT38I GRGCYC 1 cut(s) 1653
ErhI CCWWGG 3 cut(s) 390, 720, 1322
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FaqI GGGAC 1 cut(s) 1891
FauI CCCGC 2 cut(s) 32, 949
FauNDI CATATG 1 cut(s) 1144
FbaI TGATCA 1 cut(s) 324
FblI GTMKAC 1 cut(s) 1461
Fnu4HI GCNGC 6 cut(s) 92, 246, 1245, 1252, 1280, 1491
FokI GGATG 7 cut(s) 52, 167, 1077, 1124, 1283, 1391, 1680
FriOI GRGCYC 1 cut(s) 1653
Fsp4HI GCNGC 6 cut(s) 92, 246, 1245, 1252, 1280, 1491
FspBI CTAG 4 cut(s) 134, 726, 1323, 1487
GluI GCNGC 6 cut(s) 92, 246, 1245, 1252, 1280, 1491
GsaI CCCAGC 2 cut(s) 221, 740
GsuI CTGGAG 1 cut(s) 1433
HaeIII GGCC 5 cut(s) 239, 501, 1015, 1244, 1385
HapII CCGG 9 cut(s) 404, 444, 633, 1109, 1214, 1368, 1456, 1566, 1632
HgaI GACGC 1 cut(s) 218
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 9 cut(s) 196, 264, 1008, 1199, 1210, 1217, 1617, 1775, 1900
HpaII CCGG 9 cut(s) 404, 444, 633, 1109, 1214, 1368, 1456, 1566, 1632
HphI GGTGA 2 cut(s) 811, 1694
Hpy166II GTNNAC 8 cut(s) 33, 190, 340, 373, 1070, 1157, 1462, 1828
Hpy188I TCNGA 6 cut(s) 208, 451, 576, 760, 1595, 1889
Hpy8I GTNNAC 8 cut(s) 33, 190, 340, 373, 1070, 1157, 1462, 1828
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 3 cut(s) 427, 1741, 1801
HpyCH4III ACNGT 6 cut(s) 654, 1337, 1591, 1825, 1997, 2009
HpyCH4IV ACGT 4 cut(s) 416, 765, 1476, 1728
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 245, 638
HpyF3I CTNAG 5 cut(s) 1010, 1056, 1302, 1445, 1767
HpySE526I ACGT 4 cut(s) 416, 765, 1476, 1728
Kpn2I TCCGGA 2 cut(s) 1108, 1213
KpnI GGTACC 1 cut(s) 720
Ksp22I TGATCA 1 cut(s) 324
Kzo9I GATC 8 cut(s) 136, 324, 952, 1495, 1595, 1657, 1688, 1884
LguI GCTCTTC 1 cut(s) 1601
LmnI GCTCC 3 cut(s) 330, 1414, 1519
Lsp1109I GCAGC 5 cut(s) 78, 232, 1263, 1291, 1477
LweI GCATC 8 cut(s) 189, 221, 349, 652, 700, 1066, 1084, 1159
MaeI CTAG 4 cut(s) 134, 726, 1323, 1487
MaeII ACGT 4 cut(s) 416, 765, 1476, 1728
MaeIII GTNAC 3 cut(s) 919, 1407, 1582
MalI GATC 8 cut(s) 138, 326, 954, 1497, 1597, 1659, 1690, 1886
MbiI CCGCTC 1 cut(s) 1781
MboI GATC 8 cut(s) 136, 324, 952, 1495, 1595, 1657, 1688, 1884
MboII GAAGA 7 cut(s) 175, 301, 310, 929, 1618, 1730, 1895
MfeI CAATTG 2 cut(s) 1221, 1508
MflI RGATCY 1 cut(s) 952
MhlI GDGCHC 2 cut(s) 1441, 1653
MlyI GAGTC 2 cut(s) 205, 1002
MmeI TCCRAC 4 cut(s) 429, 771, 1008, 1459
Mph1103I ATGCAT 1 cut(s) 1039
MroI TCCGGA 2 cut(s) 1108, 1213
MseI TTAA 7 cut(s) 225, 315, 702, 777, 873, 1290, 1935
MslI CAYNNNNRTG 1 cut(s) 990
MspA1I CMGCKG 1 cut(s) 740
MspI CCGG 9 cut(s) 404, 444, 633, 1109, 1214, 1368, 1456, 1566, 1632
MspR9I CCNGG 7 cut(s) 261, 404, 445, 634, 1457, 1632, 1875
MunI CAATTG 2 cut(s) 1221, 1508
Mva1269I GAATGC 2 cut(s) 1039, 1817
MvaI CCWGG 2 cut(s) 261, 1875
MvnI CGCG 1 cut(s) 1247
MwoI GCNNNNNNNGC 3 cut(s) 91, 245, 638
NciI CCSGG 5 cut(s) 404, 445, 634, 1457, 1632
NcoI CCATGG 1 cut(s) 720
NdeI CATATG 1 cut(s) 1144
NdeII GATC 8 cut(s) 136, 324, 952, 1495, 1595, 1657, 1688, 1884
NheI GCTAGC 1 cut(s) 725
NlaIV GGNNCC 4 cut(s) 99, 718, 1416, 1515
NmeAIII GCCGAG 1 cut(s) 1637
NmuCI GTSAC 3 cut(s) 919, 1407, 1582
NsiI ATGCAT 1 cut(s) 1039
NspI RCATGY 1 cut(s) 1051
PagI TCATGA 3 cut(s) 231, 321, 985
PceI AGGCCT 1 cut(s) 1385
PciI ACATGT 1 cut(s) 1047
PciSI GCTCTTC 1 cut(s) 1601
PcsI WCGNNNNNNNCGW 1 cut(s) 1993
PctI GAATGC 2 cut(s) 1039, 1817
PfeI GAWTC 7 cut(s) 264, 1199, 1210, 1217, 1617, 1775, 1900
PflFI GACNNNGTC 1 cut(s) 1161
PflMI CCANNNNNTGG 1 cut(s) 713
PkrI GCNGC 6 cut(s) 93, 247, 1246, 1253, 1281, 1492
PleI GAGTC 2 cut(s) 204, 1002
PpsI GAGTC 2 cut(s) 204, 1002
Ppu21I YACGTR 1 cut(s) 417
PpuMI RGGWCCY 1 cut(s) 97
PscI ACATGT 1 cut(s) 1047
Psp124BI GAGCTC 1 cut(s) 1653
Psp1406I AACGTT 2 cut(s) 765, 1476
Psp5II RGGWCCY 1 cut(s) 97
Psp6I CCWGG 2 cut(s) 259, 1873
PspFI CCCAGC 2 cut(s) 217, 736
PspGI CCWGG 2 cut(s) 259, 1873
PspN4I GGNNCC 4 cut(s) 99, 718, 1416, 1515
PspPI GGNCC 3 cut(s) 97, 237, 1663
PspPPI RGGWCCY 1 cut(s) 97
PstI CTGCAG 1 cut(s) 96
PstNI CAGNNNCTG 1 cut(s) 713
PsuI RGATCY 1 cut(s) 952
PsyI GACNNNGTC 1 cut(s) 1161
PvuII CAGCTG 1 cut(s) 740
RsaI GTAC 4 cut(s) 353, 419, 718, 1310
RsaNI GTAC 4 cut(s) 352, 418, 717, 1309
RseI CAYNNNNRTG 1 cut(s) 990
SacI GAGCTC 1 cut(s) 1653
SapI GCTCTTC 1 cut(s) 1601
SaqAI TTAA 7 cut(s) 225, 315, 702, 777, 873, 1290, 1935
SatI GCNGC 6 cut(s) 92, 246, 1245, 1252, 1280, 1491
Sau3AI GATC 8 cut(s) 136, 324, 952, 1495, 1595, 1657, 1688, 1884
Sau96I GGNCC 3 cut(s) 97, 237, 1663
SchI GAGTC 2 cut(s) 205, 1002
ScrFI CCNGG 7 cut(s) 261, 404, 445, 634, 1457, 1632, 1875
SduI GDGCHC 2 cut(s) 1441, 1653
SfaNI GCATC 8 cut(s) 189, 221, 349, 652, 700, 1066, 1084, 1159
SfcI CTRYAG 2 cut(s) 92, 1387
SinI GGWCC 2 cut(s) 97, 1663
SmiMI CAYNNNNRTG 1 cut(s) 990
SnaBI TACGTA 1 cut(s) 417
SseBI AGGCCT 1 cut(s) 1385
SsiI CCGC 9 cut(s) 25, 252, 555, 836, 942, 1245, 1779, 1955, 2022
SspI AATATT 1 cut(s) 877
SspMI CTAG 4 cut(s) 134, 726, 1323, 1487
SstI GAGCTC 1 cut(s) 1653
StuI AGGCCT 1 cut(s) 1385
StyD4I CCNGG 7 cut(s) 259, 402, 443, 632, 1455, 1630, 1873
StyI CCWWGG 3 cut(s) 390, 720, 1322
TaaI ACNGT 6 cut(s) 654, 1337, 1591, 1825, 1997, 2009
TaiI ACGT 4 cut(s) 419, 768, 1479, 1731
TaqI TCGA 3 cut(s) 73, 282, 1794
TatI WGTACW 1 cut(s) 1308
TauI GCSGC 1 cut(s) 1247
TfiI GAWTC 7 cut(s) 264, 1199, 1210, 1217, 1617, 1775, 1900
Tru1I TTAA 7 cut(s) 225, 315, 702, 777, 873, 1290, 1935
Tru9I TTAA 7 cut(s) 225, 315, 702, 777, 873, 1290, 1935
TscAI CASTG 5 cut(s) 165, 868, 937, 1340, 1416
TseFI GTSAC 3 cut(s) 919, 1407, 1582
TseI GCWGC 5 cut(s) 91, 245, 1251, 1279, 1490
Tsp45I GTSAC 3 cut(s) 919, 1407, 1582
TspRI CASTG 5 cut(s) 165, 868, 937, 1340, 1416
Tth111I GACNNNGTC 1 cut(s) 1161
Van91I CCANNNNNTGG 1 cut(s) 713
VpaK11BI GGWCC 2 cut(s) 97, 1663
XapI RAATTY 7 cut(s) 288, 474, 511, 981, 1018, 1103, 1626
XceI RCATGY 1 cut(s) 1051
XmaJI CCTAGG 1 cut(s) 1322
XmiI GTMKAC 1 cut(s) 1461
XspI CTAG 4 cut(s) 134, 726, 1323, 1487
Zsp2I ATGCAT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.