MD07G1283100.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0017209
Physical Location & Seq
Reverse (-)
34616799 .. 34618835
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1283100.v1.1.491

Sequence Viewer

Length: 2037 bp
ATGAGAGCCATTACTCCCATTTCCCGCCAGTTTACAACTGCCAGACAACTACCAGCCATCATAACATCTACTCGAAAAACCGAACCTTTCCTACAGGACCCAGTTCTTGCACACCAAGTGTTTGGTAAAATACTTGATCAAATCCCAGATATCAAAACACTGAAGAAACTCCATTCCAGCATCCTCGTCAACCAAAATCTCCATTCGGACGCATCGCTGGGCATCAAACTCATGAGGGCCTATGCTGCTTGCGGAGAACCAGGAATCGCACGCCACATATTCGACGAAATTCCTGAGAAGAATGTTGTCTTCTTTAATGTCATGATCAGGAGCTATGTGAACAACCATTTGTACCATGATGCTCTTCTTGTTTACAAAACTATGTCTGCCAAGGGTTTTAACCCGGATAATTATACGTTCCCTTGTGTGCTGAAGGCGTGTTCCGGGTCGGATAATTTGTGGGTTGGGTTGCAAATTCATGGTGCTGTTGTGAAAGTTGGCCTTGATGTGAATTTGTTTATTGGGAATGGTTTGATTGCCATGTATGGGAAATGCGGTTGTTTGGTGGAGGCTCGGAGTGTTCTAGATGAGATGCCGTGTAAAGATGTGGTTTCTTGTAATTCTTTGGTTGCCGGGTATGCTCAAAATGGACTGTTCAATGATGCGTTAGAGGTTTGTAGGGAAATGGAGGCGTTCGGGCTTAAACCAGATGCCGGTACCATGGCTAGCCTATTCCCGGCTGTGTCCAACACTTCATCGGAGAACGTTTTGTCTGTTAAGGATATGTTTATGAAATTGGTGAAAAAGAGTTTGGTTTCGTGGAATGTGATGATAGCGGTGTATGTAAATAATTTAATGCCCAGTGAAGCAGTTAATATTTTCTTACAGATGGAGGCGAGTGGAATAGAGCCTGATGTAGTCACAATCGCCAGTGTTCTTCCCGCTTGTGGGGATCTTTCGGCTCTGTTGTTAGGGAAACGAATTCATGAATATGTTGAGAAAAAGAGACTCAGGCCAAATTTGTCGTTGGAGAATGCATTGATCGACATGTATGCTAAGTGTGGATGTTTACAAGATGCAAGAGAAGTATTTGATGCCATGAAATTTCCGGATGTTGTATCATGGACTTCAATGATGTCTGCCTATGGTAGGTGTGGACAAGGTCGTGATGCCATGACACTCTTTAGGAAAATGCAAGATTCGGGCCTGATTCCGGATTCAATTGCATTTGTATCGGTAATGGCCGCGTGCAGCCACGCAGGATTGCTGGATGAGGGACAGCATTACTTTAAAATGATGACTGAGGAGTACAGGATAGAGCCTAGGATAGAACACTGTGCTTGCATGGTTGATTTGTTTGGGCGTGCTGGAAAAGTGGATGAGGCTTACAGTTTTGTCAAACAGATGTCACTGGAGCCTAATGAAAGAGTGTGGGGTGCTCTGCTTAGTGCTTGCCGGGTATACTCTAACATGAACGTTGGACTTCTAGCTGCTGATCGCCTTTTCCAATTGGCTCCCGAGCAGTCAGGTTATTATGTCTTGTTATCAAACATCTATGCAAAAGCCGGTAGATGGCAAGATGTCACAACTGTCCGATCAATAATGAAGAGCCGAGGAATCAAGAAAATTCCCGGTGTCAGCAATGTTGAGCTCAACGATCAGGTCCATACTTTTCTTGCTGGTGATAGATCACATCCTCAATCTAAAGAAATATACGAAGAGTTAGACGTGTTGGTAGGGAAAATGAAGGAGTTAGGCTATATCCCTGAGACTGATTCCGCTCTCCATGATGTCGAGGAGGAGGAGAAGGAATGCCATCTAGCAGTTCACAGCGAGAAGTTGGCAGTAGTGTTTGCCATTCTAAATACAGAGCCAGGGACACCGATCAGAATTACCAAGAATCTTCGTGTTTGTAGCGATTGTCATATTGCAATTAAGCTCATTTCCAAAATAGCGGAACGGGAAATTGTTGTCAGGGATACTAATCGCTTCCACCATTTCAAGGACGGTTTATGTTCTTGCGGAGATTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

679

Amino Acids

75.43

Weight (kDa)

6.28

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 100 - 147 7.6e-10 PPR repeat family
PPR_2 PF13041 201 - 247 3.8e-08 PPR repeat family
PPR PF01535 204 - 234 6e-06 PPR repeat
PPR_2 PF13041 270 - 316 1.4e-08 PPR repeat family
PPR_3 PF13812 293 - 352 8.7e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 370 - 418 1.4e-10 PPR repeat family
PPR PF01535 373 - 403 2.2e-08 PPR repeat
E_motif PF20431 488 - 550 2.4e-21 E motif
Eplus_motif PF20430 555 - 580 8.7e-12 E+ motif
DYW_deaminase PF14432 586 - 678 2.9e-43 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49142
fragaria_vesca FvH4_7g08230
malus_domestica MD07G1283100.v1.1
prunus_persica Prupe.2G305300_v2.0.a1
pyrus_communis pycom07g25720
rosa_laevigata RLG00000029048
rosa_multiflora Rmu_sc0002200.1_g000053
rosa_roxburghii Rroxscaffold_4G00311530
rosa_rugosa Rorug01G0161000.1
rosa_samantha Rh1AG176000 Rh1BG144100
rosa_wichuraiana Rw0G004940 Rw1G014650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 716
AccB1I GGYRCC 1 cut(s) 716
AccBSI CCGCTC 1 cut(s) 1781
AccI GTMKAC 1 cut(s) 1461
AccII CGCG 1 cut(s) 1247
AccIII TCCGGA 2 cut(s) 1108, 1213
AciI CCGC 9 cut(s) 25, 252, 555, 836, 942, 1245, 1779, 1955, 2022
AclI AACGTT 2 cut(s) 765, 1476
AclWI GGATC 1 cut(s) 960
AcoI YGGCCR 1 cut(s) 1242
AcsI RAATTY 7 cut(s) 288, 474, 511, 981, 1018, 1103, 1626
AcuI CTGAAG 2 cut(s) 182, 452
AdeI CACNNNGTG 1 cut(s) 118
AfaI GTAC 3 cut(s) 353, 718, 1310
AfiI CCNNNNNNNGG 9 cut(s) 546, 713, 736, 947, 948, 1149, 1213, 1572, 2002
AflIII ACRYGT 2 cut(s) 1047, 1728
AgsI TTSAA 4 cut(s) 658, 1131, 1221, 2002
AjiI CACGTC 1 cut(s) 1729
AjnI CCWGG 2 cut(s) 259, 1873
AjuI GAANNNNNNNTTGG 2 cut(s) 794, 826
AluBI AGCT 4 cut(s) 333, 1490, 1651, 1939
AluI AGCT 4 cut(s) 333, 1490, 1651, 1939
Alw21I GWGCWC 2 cut(s) 1441, 1653
Alw26I GTCTC 2 cut(s) 1000, 1763
AlwI GGATC 1 cut(s) 960
Ama87I CYCGRG 1 cut(s) 1517
Aor13HI TCCGGA 2 cut(s) 1108, 1213
AoxI GGCC 5 cut(s) 237, 499, 1013, 1204, 1242
ApeKI GCWGC 3 cut(s) 245, 1251, 1490
ApoI RAATTY 7 cut(s) 288, 474, 511, 981, 1018, 1103, 1626
Asp718I GGTACC 1 cut(s) 716
AspA2I CCTAGG 1 cut(s) 1322
AspS9I GGNCC 4 cut(s) 97, 237, 1204, 1663
AsuC2I CCSGG 6 cut(s) 404, 445, 634, 737, 1457, 1632
AsuHPI GGTGA 2 cut(s) 811, 1694
AsuNHI GCTAGC 1 cut(s) 725
AvaI CYCGRG 1 cut(s) 1517
AvaII GGWCC 2 cut(s) 97, 1663
AvrII CCTAGG 1 cut(s) 1322
BanI GGYRCC 1 cut(s) 716
BanII GRGCYC 1 cut(s) 1653
BbsI GAAGAC 1 cut(s) 301
Bbv12I GWGCWC 2 cut(s) 1441, 1653
BbvI GCAGC 3 cut(s) 232, 1263, 1477
BccI CCATC 4 cut(s) 65, 883, 1566, 1824
BceAI ACGGC 1 cut(s) 580
BcgI CGANNNNNNTGC 4 cut(s) 1034, 1068, 1215, 1249
BciT130I CCWGG 2 cut(s) 261, 1875
BciVI GTATCC 1 cut(s) 1972
BclI TGATCA 2 cut(s) 136, 324
BcnI CCSGG 6 cut(s) 404, 445, 634, 737, 1457, 1632
BcoDI GTCTC 2 cut(s) 1000, 1763
BfaI CTAG 5 cut(s) 584, 726, 1323, 1487, 1820
BfmI CTRYAG 1 cut(s) 92
BfuI GTATCC 1 cut(s) 1972
BisI GCNGC 4 cut(s) 246, 1245, 1252, 1491
BlnI CCTAGG 1 cut(s) 1322
BlsI GCNGC 4 cut(s) 247, 1246, 1253, 1492
Bme1390I CCNGG 8 cut(s) 261, 404, 445, 634, 737, 1457, 1632, 1875
Bme18I GGWCC 2 cut(s) 97, 1663
BmeT110I CYCGRG 1 cut(s) 1517
BmgBI CACGTC 1 cut(s) 1729
BmgT120I GGNCC 4 cut(s) 97, 237, 1204, 1663
BmiI GGNNCC 4 cut(s) 99, 718, 1416, 1515
BmrFI CCNGG 8 cut(s) 261, 404, 445, 634, 737, 1457, 1632, 1875
BmrI ACTGGG 2 cut(s) 95, 855
BmtI GCTAGC 1 cut(s) 729
BmuI ACTGGG 2 cut(s) 95, 855
BpiI GAAGAC 1 cut(s) 301
BpmI CTGGAG 1 cut(s) 1433
BpuMI CCSGG 6 cut(s) 404, 445, 634, 737, 1457, 1632
BsaBI GATNNNNATC 1 cut(s) 1983
BsaJI CCNNGG 5 cut(s) 390, 720, 1322, 1612, 1874
BsaWI WCCGGW 2 cut(s) 1108, 1213
Bsc4I CCNNNNNNNGG 9 cut(s) 546, 713, 736, 947, 948, 1149, 1213, 1572, 2002
Bse118I RCCGGY 2 cut(s) 713, 1565
Bse1I ACTGG 5 cut(s) 28, 101, 861, 930, 1416
Bse3DI GCAATG 1 cut(s) 1648
Bse8I GATNNNNATC 1 cut(s) 1983
BseAI TCCGGA 2 cut(s) 1108, 1213
BseBI CCWGG 2 cut(s) 261, 1875
BseDI CCNNGG 5 cut(s) 390, 720, 1322, 1612, 1874
BseGI GGATG 6 cut(s) 180, 1070, 1117, 1276, 1384, 1693
BseJI GATNNNNATC 1 cut(s) 1983
BseLI CCNNNNNNNGG 9 cut(s) 546, 713, 736, 947, 948, 1149, 1213, 1572, 2002
BseMI GCAATG 1 cut(s) 1648
BseMII CTCAG 4 cut(s) 285, 1024, 1293, 1758
BseNI ACTGG 5 cut(s) 28, 101, 861, 930, 1416
BseRI GAGGAG 4 cut(s) 1319, 1811, 1814, 1817
BseXI GCAGC 3 cut(s) 232, 1263, 1477
BseYI CCCAGC 1 cut(s) 217
BsgI GTGCAG 1 cut(s) 1270
Bsh1236I CGCG 1 cut(s) 1247
BshFI GGCC 5 cut(s) 239, 501, 1015, 1206, 1244
BshNI GGYRCC 1 cut(s) 716
BsiHKAI GWGCWC 2 cut(s) 1441, 1653
BsiHKCI CYCGRG 1 cut(s) 1517
BslFI GGGAC 2 cut(s) 1290, 1891
BslI CCNNNNNNNGG 9 cut(s) 546, 713, 736, 947, 948, 1149, 1213, 1572, 2002
BsmAI GTCTC 2 cut(s) 1000, 1763
BsmFI GGGAC 2 cut(s) 1290, 1891
BsmI GAATGC 2 cut(s) 1039, 1817
BsnI GGCC 5 cut(s) 239, 501, 1015, 1206, 1244
BsoBI CYCGRG 1 cut(s) 1517
Bsp1286I GDGCHC 2 cut(s) 1441, 1653
Bsp13I TCCGGA 2 cut(s) 1108, 1213
Bsp143I GATC 9 cut(s) 136, 324, 952, 1041, 1495, 1595, 1657, 1688, 1884
Bsp19I CCATGG 1 cut(s) 720
BspACI CCGC 9 cut(s) 25, 252, 555, 836, 942, 1245, 1779, 1955, 2022
BspANI GGCC 5 cut(s) 239, 501, 1015, 1206, 1244
BspCNI CTCAG 4 cut(s) 286, 1023, 1294, 1759
BspEI TCCGGA 2 cut(s) 1108, 1213
BspFNI CGCG 1 cut(s) 1247
BspHI TCATGA 3 cut(s) 231, 321, 985
BspLI GGNNCC 4 cut(s) 99, 718, 1416, 1515
BspOI GCTAGC 1 cut(s) 729
BspPI GGATC 1 cut(s) 960
BspQI GCTCTTC 2 cut(s) 369, 1601
BspT107I GGYRCC 1 cut(s) 716
BsrBI CCGCTC 1 cut(s) 1781
BsrDI GCAATG 1 cut(s) 1648
BsrFI RCCGGY 2 cut(s) 713, 1565
BsrI ACTGG 5 cut(s) 28, 101, 861, 930, 1416
BssAI RCCGGY 2 cut(s) 713, 1565
BssECI CCNNGG 5 cut(s) 390, 720, 1322, 1612, 1874
BssMI GATC 9 cut(s) 136, 324, 952, 1041, 1495, 1595, 1657, 1688, 1884
BssNAI GTATAC 1 cut(s) 1462
BssT1I CCWWGG 3 cut(s) 390, 720, 1322
Bst1107I GTATAC 1 cut(s) 1462
Bst2UI CCWGG 2 cut(s) 261, 1875
Bst4CI ACNGT 5 cut(s) 654, 1337, 1391, 1591, 2009
Bst6I CTCTTC 3 cut(s) 369, 1601, 1713
BstC8I GCNNGC 7 cut(s) 250, 271, 727, 1249, 1342, 1365, 1453
BstDEI CTNAG 6 cut(s) 294, 1010, 1056, 1302, 1445, 1767
BstDSI CCRYGG 1 cut(s) 720
BstENI CCTNNNNNAGG 1 cut(s) 1147
BstF5I GGATG 6 cut(s) 180, 1070, 1117, 1276, 1384, 1693
BstFNI CGCG 1 cut(s) 1247
BstKTI GATC 9 cut(s) 139, 327, 955, 1044, 1498, 1598, 1660, 1691, 1887
BstMAI GTCTC 2 cut(s) 1000, 1763
BstMBI GATC 9 cut(s) 136, 324, 952, 1041, 1495, 1595, 1657, 1688, 1884
BstMWI GCNNNNNNNGC 2 cut(s) 245, 638
BstNI CCWGG 2 cut(s) 261, 1875
BstNSI RCATGY 1 cut(s) 1051
BstSCI CCNGG 8 cut(s) 259, 402, 443, 632, 735, 1455, 1630, 1873
BstSFI CTRYAG 1 cut(s) 92
BstUI CGCG 1 cut(s) 1247
BstV1I GCAGC 3 cut(s) 232, 1263, 1477
BstV2I GAAGAC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 952
BstXI CCANNNNNNTGG 1 cut(s) 122
BstYI RGATCY 1 cut(s) 952
BstZ17I GTATAC 1 cut(s) 1462
BsuI GTATCC 1 cut(s) 1972
BsuRI GGCC 5 cut(s) 239, 501, 1015, 1206, 1244
BtgI CCRYGG 1 cut(s) 720
BtgZI GCGATG 1 cut(s) 198
BtrI CACGTC 1 cut(s) 1729
BtsCI GGATG 6 cut(s) 180, 1070, 1117, 1276, 1384, 1693
BtsIMutI CAGTG 5 cut(s) 158, 868, 937, 1333, 1409
Cac8I GCNNGC 7 cut(s) 250, 271, 727, 1249, 1342, 1365, 1453
CciI TCATGA 3 cut(s) 231, 321, 985
Cfr10I RCCGGY 2 cut(s) 713, 1565
Cfr13I GGNCC 4 cut(s) 97, 237, 1204, 1663
CseI GACGC 1 cut(s) 218
Csp6I GTAC 3 cut(s) 352, 717, 1309
CviQI GTAC 3 cut(s) 352, 717, 1309
DdeI CTNAG 6 cut(s) 294, 1010, 1056, 1302, 1445, 1767
DpnI GATC 9 cut(s) 138, 326, 954, 1043, 1497, 1597, 1659, 1690, 1886
DpnII GATC 9 cut(s) 136, 324, 952, 1041, 1495, 1595, 1657, 1688, 1884
DraI TTTAAA 1 cut(s) 1291
DraIII CACNNNGTG 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 1242
Eam1104I CTCTTC 3 cut(s) 369, 1601, 1713
EarI CTCTTC 3 cut(s) 369, 1601, 1713
Ecl136II GAGCTC 1 cut(s) 1651
Eco130I CCWWGG 3 cut(s) 390, 720, 1322
Eco24I GRGCYC 1 cut(s) 1653
Eco32I GATATC 1 cut(s) 151
Eco47I GGWCC 2 cut(s) 97, 1663
Eco53kI GAGCTC 1 cut(s) 1651
Eco57I CTGAAG 2 cut(s) 182, 452
Eco88I CYCGRG 1 cut(s) 1517
EcoICRI GAGCTC 1 cut(s) 1651
EcoNI CCTNNNNNAGG 1 cut(s) 1147
EcoO109I RGGNCCY 2 cut(s) 97, 237
EcoRI GAATTC 1 cut(s) 981
EcoRII CCWGG 2 cut(s) 259, 1873
EcoRV GATATC 1 cut(s) 151
EcoT14I CCWWGG 3 cut(s) 390, 720, 1322
EcoT22I ATGCAT 1 cut(s) 1039
EcoT38I GRGCYC 1 cut(s) 1653
ErhI CCWWGG 3 cut(s) 390, 720, 1322
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FaqI GGGAC 2 cut(s) 1290, 1891
FauI CCCGC 2 cut(s) 32, 949
FbaI TGATCA 2 cut(s) 136, 324
FblI GTMKAC 1 cut(s) 1461
Fnu4HI GCNGC 4 cut(s) 246, 1245, 1252, 1491
FokI GGATG 6 cut(s) 167, 1077, 1124, 1283, 1391, 1680
FriOI GRGCYC 1 cut(s) 1653
Fsp4HI GCNGC 4 cut(s) 246, 1245, 1252, 1491
FspBI CTAG 5 cut(s) 584, 726, 1323, 1487, 1820
GluI GCNGC 4 cut(s) 246, 1245, 1252, 1491
GsaI CCCAGC 1 cut(s) 221
GsuI CTGGAG 1 cut(s) 1433
HaeIII GGCC 5 cut(s) 239, 501, 1015, 1206, 1244
HgaI GACGC 1 cut(s) 218
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 8 cut(s) 264, 1008, 1199, 1210, 1217, 1617, 1775, 1900
HphI GGTGA 2 cut(s) 811, 1694
Hpy166II GTNNAC 8 cut(s) 33, 190, 340, 373, 1070, 1157, 1462, 1828
Hpy188I TCNGA 6 cut(s) 208, 451, 576, 760, 1595, 1889
Hpy8I GTNNAC 8 cut(s) 33, 190, 340, 373, 1070, 1157, 1462, 1828
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 3 cut(s) 427, 1741, 1801
HpyCH4III ACNGT 5 cut(s) 654, 1337, 1391, 1591, 2009
HpyCH4IV ACGT 4 cut(s) 416, 765, 1476, 1728
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 638
HpyF3I CTNAG 6 cut(s) 294, 1010, 1056, 1302, 1445, 1767
HpySE526I ACGT 4 cut(s) 416, 765, 1476, 1728
Kpn2I TCCGGA 2 cut(s) 1108, 1213
KpnI GGTACC 1 cut(s) 720
Ksp22I TGATCA 2 cut(s) 136, 324
Kzo9I GATC 9 cut(s) 136, 324, 952, 1041, 1495, 1595, 1657, 1688, 1884
LguI GCTCTTC 2 cut(s) 369, 1601
LmnI GCTCC 3 cut(s) 330, 1414, 1519
Lsp1109I GCAGC 3 cut(s) 232, 1263, 1477
MaeI CTAG 5 cut(s) 584, 726, 1323, 1487, 1820
MaeII ACGT 4 cut(s) 416, 765, 1476, 1728
MaeIII GTNAC 3 cut(s) 919, 1407, 1582
MalI GATC 9 cut(s) 138, 326, 954, 1043, 1497, 1597, 1659, 1690, 1886
MbiI CCGCTC 1 cut(s) 1781
MboI GATC 9 cut(s) 136, 324, 952, 1041, 1495, 1595, 1657, 1688, 1884
MboII GAAGA 8 cut(s) 175, 301, 310, 356, 929, 1618, 1730, 1895
MfeI CAATTG 2 cut(s) 1221, 1508
MflI RGATCY 1 cut(s) 952
MhlI GDGCHC 2 cut(s) 1441, 1653
MlyI GAGTC 1 cut(s) 1002
MmeI TCCRAC 4 cut(s) 429, 771, 1008, 1459
Mph1103I ATGCAT 1 cut(s) 1039
MroI TCCGGA 2 cut(s) 1108, 1213
MseI TTAA 8 cut(s) 315, 399, 702, 777, 854, 873, 1290, 1935
MslI CAYNNNNRTG 1 cut(s) 990
MspR9I CCNGG 8 cut(s) 261, 404, 445, 634, 737, 1457, 1632, 1875
MunI CAATTG 2 cut(s) 1221, 1508
Mva1269I GAATGC 2 cut(s) 1039, 1817
MvaI CCWGG 2 cut(s) 261, 1875
MvnI CGCG 1 cut(s) 1247
MwoI GCNNNNNNNGC 2 cut(s) 245, 638
NciI CCSGG 6 cut(s) 404, 445, 634, 737, 1457, 1632
NcoI CCATGG 1 cut(s) 720
NdeII GATC 9 cut(s) 136, 324, 952, 1041, 1495, 1595, 1657, 1688, 1884
NheI GCTAGC 1 cut(s) 725
NlaIV GGNNCC 4 cut(s) 99, 718, 1416, 1515
NmeAIII GCCGAG 1 cut(s) 1637
NmuCI GTSAC 3 cut(s) 919, 1407, 1582
NsiI ATGCAT 1 cut(s) 1039
NspI RCATGY 1 cut(s) 1051
PagI TCATGA 3 cut(s) 231, 321, 985
PciI ACATGT 1 cut(s) 1047
PciSI GCTCTTC 2 cut(s) 369, 1601
PctI GAATGC 2 cut(s) 1039, 1817
PfeI GAWTC 7 cut(s) 264, 1199, 1210, 1217, 1617, 1775, 1900
PflFI GACNNNGTC 1 cut(s) 1161
PkrI GCNGC 4 cut(s) 247, 1246, 1253, 1492
PleI GAGTC 1 cut(s) 1002
PpsI GAGTC 1 cut(s) 1002
PpuMI RGGWCCY 1 cut(s) 97
PscI ACATGT 1 cut(s) 1047
Psp124BI GAGCTC 1 cut(s) 1653
Psp1406I AACGTT 2 cut(s) 765, 1476
Psp5II RGGWCCY 1 cut(s) 97
Psp6I CCWGG 2 cut(s) 259, 1873
PspFI CCCAGC 1 cut(s) 217
PspGI CCWGG 2 cut(s) 259, 1873
PspN4I GGNNCC 4 cut(s) 99, 718, 1416, 1515
PspPI GGNCC 4 cut(s) 97, 237, 1204, 1663
PspPPI RGGWCCY 1 cut(s) 97
PsrI GAACNNNNNNTAC 2 cut(s) 75, 107
PsuI RGATCY 1 cut(s) 952
PsyI GACNNNGTC 1 cut(s) 1161
RsaI GTAC 3 cut(s) 353, 718, 1310
RsaNI GTAC 3 cut(s) 352, 717, 1309
RseI CAYNNNNRTG 1 cut(s) 990
SacI GAGCTC 1 cut(s) 1653
SapI GCTCTTC 2 cut(s) 369, 1601
SaqAI TTAA 8 cut(s) 315, 399, 702, 777, 854, 873, 1290, 1935
SatI GCNGC 4 cut(s) 246, 1245, 1252, 1491
Sau3AI GATC 9 cut(s) 136, 324, 952, 1041, 1495, 1595, 1657, 1688, 1884
Sau96I GGNCC 4 cut(s) 97, 237, 1204, 1663
SchI GAGTC 1 cut(s) 1002
ScrFI CCNGG 8 cut(s) 261, 404, 445, 634, 737, 1457, 1632, 1875
SduI GDGCHC 2 cut(s) 1441, 1653
SfcI CTRYAG 1 cut(s) 92
SinI GGWCC 2 cut(s) 97, 1663
SmiMI CAYNNNNRTG 1 cut(s) 990
SsiI CCGC 9 cut(s) 25, 252, 555, 836, 942, 1245, 1779, 1955, 2022
SspI AATATT 1 cut(s) 877
SspMI CTAG 5 cut(s) 584, 726, 1323, 1487, 1820
SstI GAGCTC 1 cut(s) 1653
StyD4I CCNGG 8 cut(s) 259, 402, 443, 632, 735, 1455, 1630, 1873
StyI CCWWGG 3 cut(s) 390, 720, 1322
TaaI ACNGT 5 cut(s) 654, 1337, 1391, 1591, 2009
TaiI ACGT 4 cut(s) 419, 768, 1479, 1731
TaqI TCGA 4 cut(s) 73, 282, 1044, 1794
TatI WGTACW 1 cut(s) 1308
TauI GCSGC 1 cut(s) 1247
TfiI GAWTC 7 cut(s) 264, 1199, 1210, 1217, 1617, 1775, 1900
Tru1I TTAA 8 cut(s) 315, 399, 702, 777, 854, 873, 1290, 1935
Tru9I TTAA 8 cut(s) 315, 399, 702, 777, 854, 873, 1290, 1935
TscAI CASTG 5 cut(s) 165, 868, 937, 1340, 1416
TseFI GTSAC 3 cut(s) 919, 1407, 1582
TseI GCWGC 3 cut(s) 245, 1251, 1490
Tsp45I GTSAC 3 cut(s) 919, 1407, 1582
TspRI CASTG 5 cut(s) 165, 868, 937, 1340, 1416
Tth111I GACNNNGTC 1 cut(s) 1161
VpaK11BI GGWCC 2 cut(s) 97, 1663
XagI CCTNNNNNAGG 1 cut(s) 1147
XapI RAATTY 7 cut(s) 288, 474, 511, 981, 1018, 1103, 1626
XbaI TCTAGA 1 cut(s) 583
XceI RCATGY 1 cut(s) 1051
XmaJI CCTAGG 1 cut(s) 1322
XmiI GTMKAC 1 cut(s) 1461
XspI CTAG 5 cut(s) 584, 726, 1323, 1487, 1820
Zsp2I ATGCAT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.