FvH4_7g10850

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014600
Physical Location & Seq
Forward (+)
10181364 .. 10182511
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g10850.t1

Sequence Viewer

Length: 684 bp
ATGGTGTCCTCAACATCCCTTGTAATCTCTCCAAGAACGTTCAGATCAGACTTGTACTCCTATCCATACCAGGCGGATTCCAACACCCCTTTGGTGGTTAACGTTCTTGCTTCTCTTATAGAGAGGAACATGGCCAGGAACCAAAGGATTTCCAAGAACTGCAGCAGCCCTTGGTACTTGTCCAAAGACATGAAGAAGACTCGGATTTTCGAGTGTCACGAGACTCCGGACATGACCATTCAGTCGTATTTGGAGAGGATTTTCAGGTACACAAGAGCCGGGCCGTCTGTTTACGTGGTTGCTTATGTATATATCGACCGGTTTTGCCAGAACAATCCTGGTTTTCGAATCAATGTCACAAATGTGCATAGGTTACTCATCACAACTATAATGGTGGCTTCGAAATATGTAGAAGACATGAATTACAGAAACTCTTACTTTGCAAGAGTCGGGGGATTAACGACAAACGAGCTGAACAAGCTGGAGCTTGAGTTTCTGTTCTTGATGGGATTCAAGTTACATGTGAATGTGAGTGTGTTTGAGAGCTACTGTTGTCATTTGGAAAGAGAAGTCAGTATTGGAGGAGGCTACCAAATTGAGAGCACATTGCGATGTGCAGAAGAAATCAAAACGAGGCAAGATGAAGATAGAAGATATAACCAGTGTGCTGGTCTTTTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

228

Amino Acids

26.39

Weight (kDa)

8.63

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin PF08613 33 - 173 1.5e-35 Cyclin
Cyclin_N PF00134 80 - 173 2.6e-09 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014600)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45080
fragaria_vesca FvH4_7g10850
malus_domestica MD07G1113400.v1.1
prunus_persica Prupe.2G136400_v2.0.a1 Prupe.2G136400_v2.0.a1
pyrus_communis pycom07g09810
rosa_chinensis RchiOBHm_Chr1g0348831
rosa_laevigata RLG00000028623
rosa_multiflora Rmu_sc0032387.1_g000001
rosa_roxburghii Rroxscaffold_4G00306550
rosa_rugosa Rorug01G0198000
rosa_samantha Rh1AG215400 Rh1BG181800 Rh1CG199900 Rh1DG211600
rosa_wichuraiana Rw1G018250 Rw1G018360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 241
AccIII TCCGGA 1 cut(s) 226
AciI CCGC 1 cut(s) 74
AclI AACGTT 2 cut(s) 38, 102
AcoI YGGCCR 1 cut(s) 132
AfaI GTAC 3 cut(s) 56, 176, 269
AfiI CCNNNNNNNGG 1 cut(s) 94
AflIII ACRYGT 1 cut(s) 520
AgeI ACCGGT 1 cut(s) 318
AgsI TTSAA 1 cut(s) 514
AjnI CCWGG 3 cut(s) 69, 134, 337
AjuI GAANNNNNNNTTGG 2 cut(s) 561, 593
AleI CACNNNNGTG 1 cut(s) 362
AluBI AGCT 4 cut(s) 472, 481, 487, 546
AluI AGCT 4 cut(s) 472, 481, 487, 546
Alw21I GWGCWC 1 cut(s) 605
Alw26I GTCTC 1 cut(s) 215
Aor13HI TCCGGA 1 cut(s) 226
AoxI GGCC 2 cut(s) 132, 281
ApeKI GCWGC 2 cut(s) 162, 165
AsiGI ACCGGT 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 281
AsuC2I CCSGG 1 cut(s) 280
AsuII TTCGAA 2 cut(s) 346, 401
BalI TGGCCA 1 cut(s) 134
BauI CACGAG 1 cut(s) 218
BbsI GAAGAC 2 cut(s) 203, 420
Bbv12I GWGCWC 1 cut(s) 605
BbvI GCAGC 2 cut(s) 174, 177
BccI CCATC 1 cut(s) 499
BceAI ACGGC 1 cut(s) 268
BciT130I CCWGG 3 cut(s) 71, 136, 339
BcnI CCSGG 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 160
BisI GCNGC 2 cut(s) 163, 166
BlsI GCNGC 2 cut(s) 164, 167
Bme1390I CCNGG 4 cut(s) 71, 136, 280, 339
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 140
BmrFI CCNGG 4 cut(s) 71, 136, 280, 339
BpiI GAAGAC 2 cut(s) 203, 420
BpmI CTGGAG 1 cut(s) 503
Bpu14I TTCGAA 2 cut(s) 346, 401
BpuEI CTTGAG 1 cut(s) 509
BpuMI CCSGG 1 cut(s) 280
BsaAI YACGTR 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 170
BsaWI WCCGGW 2 cut(s) 226, 318
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 476, 506
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse118I RCCGGY 1 cut(s) 318
Bse1I ACTGG 1 cut(s) 661
Bse3DI GCAATG 1 cut(s) 605
BseAI TCCGGA 1 cut(s) 226
BseBI CCWGG 3 cut(s) 71, 136, 339
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMI GCAATG 1 cut(s) 605
BseNI ACTGG 1 cut(s) 661
BseRI GAGGAG 1 cut(s) 597
BseXI GCAGC 2 cut(s) 174, 177
BsgI GTGCAG 1 cut(s) 636
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 2 cut(s) 134, 283
BshTI ACCGGT 1 cut(s) 318
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 605
BsiSI CCGG 3 cut(s) 227, 279, 319
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 1 cut(s) 215
BsnI GGCC 2 cut(s) 134, 283
Bsp119I TTCGAA 2 cut(s) 346, 401
Bsp1286I GDGCHC 1 cut(s) 605
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 1 cut(s) 44
BspACI CCGC 1 cut(s) 74
BspANI GGCC 2 cut(s) 134, 283
BspEI TCCGGA 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 140
BspMAI CTGCAG 1 cut(s) 164
BspT104I TTCGAA 2 cut(s) 346, 401
BsrDI GCAATG 1 cut(s) 605
BsrFI RCCGGY 1 cut(s) 318
BsrI ACTGG 1 cut(s) 661
BssAI RCCGGY 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 1 cut(s) 44
BssSI CACGAG 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 218
Bst2UI CCWGG 3 cut(s) 71, 136, 339
Bst4CI ACNGT 1 cut(s) 551
BstBAI YACGTR 1 cut(s) 295
BstBI TTCGAA 2 cut(s) 346, 401
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 1 cut(s) 47
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 44
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 1 cut(s) 478
BstNI CCWGG 3 cut(s) 71, 136, 339
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 4 cut(s) 69, 134, 278, 337
BstSFI CTRYAG 1 cut(s) 160
BstV1I GCAGC 2 cut(s) 174, 177
BstV2I GAAGAC 2 cut(s) 203, 420
BstXI CCANNNNNNTGG 1 cut(s) 668
BsuRI GGCC 2 cut(s) 134, 283
BtgZI GCGATG 1 cut(s) 625
BtsCI GGATG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 668
Cfr10I RCCGGY 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 281
Csp6I GTAC 3 cut(s) 55, 175, 268
CspAI ACCGGT 1 cut(s) 318
CviAII CATG 5 cut(s) 130, 190, 232, 418, 521
CviQI GTAC 3 cut(s) 55, 175, 268
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
DrdI GACNNNNNNGTC 1 cut(s) 241
DseDI GACNNNNNNGTC 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 132
EciI GGCGGA 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 170
EcoRII CCWGG 3 cut(s) 69, 134, 337
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 5 cut(s) 133, 193, 235, 421, 524
FatI CATG 5 cut(s) 129, 189, 231, 417, 520
Fnu4HI GCNGC 2 cut(s) 163, 166
Fsp4HI GCNGC 2 cut(s) 163, 166
GluI GCNGC 2 cut(s) 163, 166
GsuI CTGGAG 1 cut(s) 503
HaeIII GGCC 2 cut(s) 134, 283
HapII CCGG 3 cut(s) 227, 279, 319
Hin1II CATG 5 cut(s) 133, 193, 235, 421, 524
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 6 cut(s) 77, 199, 223, 348, 447, 510
HpaI GTTAAC 1 cut(s) 100
HpaII CCGG 3 cut(s) 227, 279, 319
Hpy166II GTNNAC 3 cut(s) 100, 270, 292
Hpy188I TCNGA 3 cut(s) 44, 49, 204
Hpy188III TCNNGA 3 cut(s) 218, 227, 502
Hpy8I GTNNAC 3 cut(s) 100, 270, 292
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4IV ACGT 3 cut(s) 38, 102, 294
HpyCH4V TGCA 4 cut(s) 162, 367, 443, 617
HpyF10VI GCNNNNNNNGC 1 cut(s) 478
HpySE526I ACGT 3 cut(s) 38, 102, 294
Hsp92II CATG 5 cut(s) 133, 193, 235, 421, 524
Kpn2I TCCGGA 1 cut(s) 226
KspAI GTTAAC 1 cut(s) 100
Kzo9I GATC 1 cut(s) 44
LmnI GCTCC 1 cut(s) 484
Lsp1109I GCAGC 2 cut(s) 174, 177
MaeII ACGT 3 cut(s) 38, 102, 294
MaeIII GTNAC 4 cut(s) 215, 355, 372, 516
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 6 cut(s) 205, 208, 425, 632, 656, 663
MhlI GDGCHC 1 cut(s) 605
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 2 cut(s) 421, 594
MluNI TGGCCA 1 cut(s) 134
MlyI GAGTC 3 cut(s) 193, 217, 456
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 6 cut(s) 19, 117, 249, 575, 578, 627
Mox20I TGGCCA 1 cut(s) 134
MroI TCCGGA 1 cut(s) 226
MscI TGGCCA 1 cut(s) 134
MseI TTAA 2 cut(s) 99, 458
MslI CAYNNNNRTG 3 cut(s) 362, 525, 610
Msp20I TGGCCA 1 cut(s) 134
MspI CCGG 3 cut(s) 227, 279, 319
MspR9I CCNGG 4 cut(s) 71, 136, 280, 339
MvaI CCWGG 3 cut(s) 71, 136, 339
MwoI GCNNNNNNNGC 1 cut(s) 478
NciI CCSGG 1 cut(s) 280
NdeII GATC 1 cut(s) 44
NlaIII CATG 5 cut(s) 133, 193, 235, 421, 524
NlaIV GGNNCC 1 cut(s) 140
NmuCI GTSAC 2 cut(s) 215, 355
NspI RCATGY 1 cut(s) 524
NspV TTCGAA 2 cut(s) 346, 401
OliI CACNNNNGTG 1 cut(s) 362
PciI ACATGT 1 cut(s) 520
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PfeI GAWTC 3 cut(s) 77, 348, 510
PinAI ACCGGT 1 cut(s) 318
PkrI GCNGC 2 cut(s) 164, 167
PleI GAGTC 3 cut(s) 193, 217, 455
PpsI GAGTC 3 cut(s) 193, 217, 455
Ppu21I YACGTR 1 cut(s) 295
PscI ACATGT 1 cut(s) 520
Psp1406I AACGTT 2 cut(s) 38, 102
Psp6I CCWGG 3 cut(s) 69, 134, 337
PspGI CCWGG 3 cut(s) 69, 134, 337
PspN4I GGNNCC 1 cut(s) 140
PspPI GGNCC 1 cut(s) 281
PstI CTGCAG 1 cut(s) 164
RsaI GTAC 3 cut(s) 56, 176, 269
RsaNI GTAC 3 cut(s) 55, 175, 268
RseI CAYNNNNRTG 3 cut(s) 362, 525, 610
SaqAI TTAA 2 cut(s) 99, 458
SatI GCNGC 2 cut(s) 163, 166
Sau3AI GATC 1 cut(s) 44
Sau96I GGNCC 1 cut(s) 281
SchI GAGTC 3 cut(s) 193, 217, 456
ScrFI CCNGG 4 cut(s) 71, 136, 280, 339
SduI GDGCHC 1 cut(s) 605
SetI ASST 9 cut(s) 41, 105, 269, 297, 374, 474, 483, 489, 548
SfcI CTRYAG 1 cut(s) 160
SfuI TTCGAA 2 cut(s) 346, 401
SmiMI CAYNNNNRTG 3 cut(s) 362, 525, 610
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 2 cut(s) 421, 594
SsiI CCGC 1 cut(s) 74
StyD4I CCNGG 4 cut(s) 69, 134, 278, 337
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 551
TaiI ACGT 3 cut(s) 41, 105, 297
TaqI TCGA 4 cut(s) 210, 315, 346, 401
TasI AATT 2 cut(s) 421, 594
TatI WGTACW 1 cut(s) 54
TfiI GAWTC 3 cut(s) 77, 348, 510
Tru1I TTAA 2 cut(s) 99, 458
Tru9I TTAA 2 cut(s) 99, 458
TscAI CASTG 1 cut(s) 668
TseFI GTSAC 2 cut(s) 215, 355
TseI GCWGC 2 cut(s) 162, 165
Tsp45I GTSAC 2 cut(s) 215, 355
TspDTI ATGAA 3 cut(s) 206, 434, 657
TspRI CASTG 1 cut(s) 668
XceI RCATGY 1 cut(s) 524
XcmI CCANNNNNNNNNTGG 2 cut(s) 88, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.