Rh1DG211600

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0014600
Physical Location & Seq
Forward (+)
41163326 .. 41164467
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG211600.1

Sequence Viewer

Length: 771 bp
ATGCTCTCTCTAGCCAAAACCTCTTTCACCACAAAACCCCAAAAGAATAAGCCTCTCTCTTTCACAGATATACGCAGAAAACCAAAAATGGTTTCCTCAACATCCCTTGTAATCTCTCCAAGAAAGTTCAGATCAGATTTGTACTCCTATCCATACCAAGCCGATTCAAACACCCCTTTGGTGGTTAATGTTCTTGCTTCTCTTATTGAGAGAAACATGGCCAGGAACCAAAGGATTTCAAAGAACTGCAGCCCTTGGTACTTGTCCAAAGACATGAAGAAGACTCGGATTTTCGAGTGCCACGAGACTCCGGACATGACGATTCAGTCGTATTTGGAGAGAATTTTCAGGTACACAAGAGCCGGGCCGTCTGTTTATGTGGTCGCTTATGTATATATCGATCGGTTTTGCCAGAACAATCCTGGTTTTCGAATCAATGTCACAAATGTGCACAGGTTACTCATCACAACTATAATGGTGGCTTCGAAATATGTAGAAGACATGAATTACAGAAATTCTTACTTTGCAAGAGTCGGGGGATTAACAACAAACGAGCTGAACAAGTTGGAGCTTGAGTTTTTGTTTCTGATGGGATTCAAGTTACATGTGAATGTGAGTGTGTTTGAGAGCTACTGTTGTCATTTAGAAAGAGAAGTCAGTATTGGAGGAGGCTACCAAATTGAGAGCACATTGAGATGTGCAGAAGAAATCAAAACAAGGCAAGATGAAGATAGAAGATATAACCAGTGTGCTGCAGGTGTTTTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

256

Amino Acids

29.73

Weight (kDa)

9.39

Isoelectric Point (pI)

36.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin PF08613 63 - 201 3.1e-35 Cyclin
Cyclin_N PF00134 108 - 201 4.4e-09 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014600)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45080
fragaria_vesca FvH4_7g10850
malus_domestica MD07G1113400.v1.1
prunus_persica Prupe.2G136400_v2.0.a1 Prupe.2G136400_v2.0.a1
pyrus_communis pycom07g09810
rosa_chinensis RchiOBHm_Chr1g0348831
rosa_laevigata RLG00000028623
rosa_multiflora Rmu_sc0032387.1_g000001
rosa_roxburghii Rroxscaffold_4G00306550
rosa_rugosa Rorug01G0198000
rosa_samantha Rh1AG215400 Rh1BG181800 Rh1CG199900 Rh1DG211600
rosa_wichuraiana Rw1G018250 Rw1G018360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 746
AasI GACNNNNNNGTC 1 cut(s) 325
Acc36I ACCTGC 1 cut(s) 746
AccIII TCCGGA 1 cut(s) 310
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 2 cut(s) 342, 514
AfaI GTAC 3 cut(s) 143, 260, 353
AfiI CCNNNNNNNGG 1 cut(s) 181
AflIII ACRYGT 1 cut(s) 604
AgsI TTSAA 3 cut(s) 168, 240, 598
AjnI CCWGG 2 cut(s) 221, 421
AjuI GAANNNNNNNTTGG 6 cut(s) 8, 40, 76, 108, 645, 677
AleI CACNNNNGTG 1 cut(s) 446
AluBI AGCT 3 cut(s) 556, 571, 630
AluI AGCT 3 cut(s) 556, 571, 630
Alw21I GWGCWC 2 cut(s) 453, 689
Alw26I GTCTC 1 cut(s) 299
Alw44I GTGCAC 1 cut(s) 449
Aor13HI TCCGGA 1 cut(s) 310
AoxI GGCC 2 cut(s) 219, 365
ApaLI GTGCAC 1 cut(s) 449
ApeKI GCWGC 2 cut(s) 249, 752
ApoI RAATTY 2 cut(s) 342, 514
AspS9I GGNCC 1 cut(s) 365
AsuC2I CCSGG 1 cut(s) 364
AsuHPI GGTGA 1 cut(s) 19
AsuII TTCGAA 2 cut(s) 430, 485
BaeGI GKGCMC 1 cut(s) 453
BalI TGGCCA 1 cut(s) 221
BauI CACGAG 1 cut(s) 302
BbsI GAAGAC 2 cut(s) 287, 504
Bbv12I GWGCWC 2 cut(s) 453, 689
BbvI GCAGC 2 cut(s) 261, 739
BccI CCATC 1 cut(s) 583
BceAI ACGGC 1 cut(s) 352
BciT130I CCWGG 2 cut(s) 223, 423
BcnI CCSGG 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 1 cut(s) 11
BfmI CTRYAG 2 cut(s) 247, 753
BfuAI ACCTGC 1 cut(s) 746
BisI GCNGC 2 cut(s) 250, 753
BlsI GCNGC 2 cut(s) 251, 754
Bme1390I CCNGG 3 cut(s) 223, 364, 423
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 227
BmrFI CCNGG 3 cut(s) 223, 364, 423
BpiI GAAGAC 2 cut(s) 287, 504
Bpu14I TTCGAA 2 cut(s) 430, 485
BpuEI CTTGAG 1 cut(s) 593
BpuMI CCSGG 1 cut(s) 364
Bsa29I ATCGAT 1 cut(s) 399
BsaJI CCNNGG 1 cut(s) 254
BsaWI WCCGGW 1 cut(s) 310
BsaXI ACNNNNNCTCC 2 cut(s) 560, 590
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 745
BseAI TCCGGA 1 cut(s) 310
BseBI CCWGG 2 cut(s) 223, 423
BseCI ATCGAT 1 cut(s) 399
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 181
BseNI ACTGG 1 cut(s) 745
BseRI GAGGAG 1 cut(s) 681
BseSI GKGCMC 1 cut(s) 453
BseXI GCAGC 2 cut(s) 261, 739
BsgI GTGCAG 1 cut(s) 720
Bsh1285I CGRYCG 1 cut(s) 403
BshFI GGCC 2 cut(s) 221, 367
BshVI ATCGAT 1 cut(s) 399
BsiEI CGRYCG 1 cut(s) 403
BsiHKAI GWGCWC 2 cut(s) 453, 689
BsiSI CCGG 2 cut(s) 311, 363
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 299
BsnI GGCC 2 cut(s) 221, 367
Bsp119I TTCGAA 2 cut(s) 430, 485
Bsp1286I GDGCHC 2 cut(s) 453, 689
Bsp13I TCCGGA 1 cut(s) 310
Bsp143I GATC 2 cut(s) 131, 400
BspANI GGCC 2 cut(s) 221, 367
BspDI ATCGAT 1 cut(s) 399
BspEI TCCGGA 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 227
BspMAI CTGCAG 2 cut(s) 251, 757
BspMI ACCTGC 1 cut(s) 746
BspT104I TTCGAA 2 cut(s) 430, 485
BsrI ACTGG 1 cut(s) 745
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 2 cut(s) 131, 400
BssSI CACGAG 1 cut(s) 302
BssT1I CCWWGG 1 cut(s) 254
Bst2BI CACGAG 1 cut(s) 302
Bst2UI CCWGG 2 cut(s) 223, 423
Bst4CI ACNGT 1 cut(s) 635
BstBI TTCGAA 2 cut(s) 430, 485
BstF5I GGATG 1 cut(s) 101
BstKTI GATC 2 cut(s) 134, 403
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 2 cut(s) 131, 400
BstMCI CGRYCG 1 cut(s) 403
BstNI CCWGG 2 cut(s) 223, 423
BstNSI RCATGY 1 cut(s) 608
BstSCI CCNGG 3 cut(s) 221, 362, 421
BstSFI CTRYAG 2 cut(s) 247, 753
BstSLI GKGCMC 1 cut(s) 453
BstV1I GCAGC 2 cut(s) 261, 739
BstV2I GAAGAC 2 cut(s) 287, 504
Bsu15I ATCGAT 1 cut(s) 399
BsuRI GGCC 2 cut(s) 221, 367
BsuTUI ATCGAT 1 cut(s) 399
BtsCI GGATG 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 752
BveI ACCTGC 1 cut(s) 746
Cfr13I GGNCC 1 cut(s) 365
ClaI ATCGAT 1 cut(s) 399
Csp6I GTAC 3 cut(s) 142, 259, 352
CviAII CATG 5 cut(s) 217, 274, 316, 502, 605
CviQI GTAC 3 cut(s) 142, 259, 352
DpnI GATC 2 cut(s) 133, 402
DpnII GATC 2 cut(s) 131, 400
DrdI GACNNNNNNGTC 1 cut(s) 325
DseDI GACNNNNNNGTC 1 cut(s) 325
EaeI YGGCCR 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 254
EcoRII CCWGG 2 cut(s) 221, 421
EcoT14I CCWWGG 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 254
FaeI CATG 5 cut(s) 220, 277, 319, 505, 608
FatI CATG 5 cut(s) 216, 273, 315, 501, 604
Fnu4HI GCNGC 2 cut(s) 250, 753
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 2 cut(s) 250, 753
FspBI CTAG 1 cut(s) 11
GluI GCNGC 2 cut(s) 250, 753
HaeIII GGCC 2 cut(s) 221, 367
HapII CCGG 2 cut(s) 311, 363
Hin1II CATG 5 cut(s) 220, 277, 319, 505, 608
HinfI GANTC 7 cut(s) 164, 283, 307, 322, 432, 531, 594
HpaII CCGG 2 cut(s) 311, 363
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 354, 451
Hpy188I TCNGA 4 cut(s) 131, 136, 288, 588
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 2 cut(s) 354, 451
HpyCH4III ACNGT 1 cut(s) 635
HpyCH4V TGCA 5 cut(s) 249, 451, 527, 701, 755
Hsp92II CATG 5 cut(s) 220, 277, 319, 505, 608
Kpn2I TCCGGA 1 cut(s) 310
Kzo9I GATC 2 cut(s) 131, 400
LmnI GCTCC 1 cut(s) 568
Lsp1109I GCAGC 2 cut(s) 261, 739
MaeI CTAG 1 cut(s) 11
MaeIII GTNAC 3 cut(s) 439, 456, 600
MalI GATC 2 cut(s) 133, 402
MboI GATC 2 cut(s) 131, 400
MboII GAAGA 6 cut(s) 289, 292, 509, 716, 740, 747
MhlI GDGCHC 2 cut(s) 453, 689
MlsI TGGCCA 1 cut(s) 221
MluCI AATT 4 cut(s) 342, 505, 514, 678
MluNI TGGCCA 1 cut(s) 221
MlyI GAGTC 3 cut(s) 277, 301, 540
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 5 cut(s) 31, 63, 106, 659, 662
Mox20I TGGCCA 1 cut(s) 221
MroI TCCGGA 1 cut(s) 310
MscI TGGCCA 1 cut(s) 221
MseI TTAA 2 cut(s) 186, 542
MslI CAYNNNNRTG 3 cut(s) 446, 609, 694
Msp20I TGGCCA 1 cut(s) 221
MspI CCGG 2 cut(s) 311, 363
MspR9I CCNGG 3 cut(s) 223, 364, 423
MvaI CCWGG 2 cut(s) 223, 423
NciI CCSGG 1 cut(s) 364
NdeII GATC 2 cut(s) 131, 400
NlaIII CATG 5 cut(s) 220, 277, 319, 505, 608
NlaIV GGNNCC 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 439
NspI RCATGY 1 cut(s) 608
NspV TTCGAA 2 cut(s) 430, 485
OliI CACNNNNGTG 1 cut(s) 446
PaqCI CACCTGC 1 cut(s) 746
PciI ACATGT 1 cut(s) 604
PcsI WCGNNNNNNNCGW 2 cut(s) 300, 326
PfeI GAWTC 4 cut(s) 164, 322, 432, 594
PkrI GCNGC 2 cut(s) 251, 754
Ple19I CGATCG 1 cut(s) 403
PleI GAGTC 3 cut(s) 277, 301, 539
PpsI GAGTC 3 cut(s) 277, 301, 539
PscI ACATGT 1 cut(s) 604
Psp6I CCWGG 2 cut(s) 221, 421
PspGI CCWGG 2 cut(s) 221, 421
PspN4I GGNNCC 1 cut(s) 227
PspPI GGNCC 1 cut(s) 365
PstI CTGCAG 2 cut(s) 251, 757
PvuI CGATCG 1 cut(s) 403
RsaI GTAC 3 cut(s) 143, 260, 353
RsaNI GTAC 3 cut(s) 142, 259, 352
RseI CAYNNNNRTG 3 cut(s) 446, 609, 694
SaqAI TTAA 2 cut(s) 186, 542
SatI GCNGC 2 cut(s) 250, 753
Sau3AI GATC 2 cut(s) 131, 400
Sau96I GGNCC 1 cut(s) 365
SchI GAGTC 3 cut(s) 277, 301, 540
ScrFI CCNGG 3 cut(s) 223, 364, 423
SduI GDGCHC 2 cut(s) 453, 689
SetI ASST 7 cut(s) 23, 353, 458, 558, 573, 632, 760
SfcI CTRYAG 2 cut(s) 247, 753
SfuI TTCGAA 2 cut(s) 430, 485
SmiMI CAYNNNNRTG 3 cut(s) 446, 609, 694
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
Sse9I AATT 4 cut(s) 342, 505, 514, 678
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 3 cut(s) 221, 362, 421
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 1 cut(s) 635
TaqI TCGA 4 cut(s) 294, 399, 430, 485
TasI AATT 4 cut(s) 342, 505, 514, 678
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 4 cut(s) 164, 322, 432, 594
Tru1I TTAA 2 cut(s) 186, 542
Tru9I TTAA 2 cut(s) 186, 542
TscAI CASTG 1 cut(s) 752
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 2 cut(s) 249, 752
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 3 cut(s) 290, 518, 741
TspRI CASTG 1 cut(s) 752
VneI GTGCAC 1 cut(s) 449
XapI RAATTY 2 cut(s) 342, 514
XceI RCATGY 1 cut(s) 608
XcmI CCANNNNNNNNNTGG 1 cut(s) 419
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.