MD07G1113400.v1.1

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0014600
Physical Location & Seq
Forward (+)
13390251 .. 13391350
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1113400.v1.1.491

Sequence Viewer

Length: 693 bp
ATGGTTTCATCATCAGCATCAACTTCTCTGATGATCTCTCCAAGAAAACTTAGGTCAGATTTGTATTCTTACTCATACCAAGATGATTCAGAAACCCCACTAGTGGTTAATGTTCTTGCTTCTCTGATTGAGAGAAACATGGCAAGGAACCAGAGGATTGCCAAGAATTGCAGCAGCCCTTGGTACATGTCCAAGGACATGAAAAAGACTAGGATTTTTGAGTGTCATGAGACTCCTGACCTGACAATTCAGTCATACTTAGAGAGGATTTTCAGGTACACAAGAGCTGGGCCGTCTGTGTATGTTGTTGCGTATGTGTATATTGATCGGTTTTGCCAGAACAATCCTGCATTTAAGATCAATGTCACTAATGTCCATAGGCTCCTCATCACAACTATTATGGTGGCTTCCAAGTACGTTGAAGACATGAATTACAGAAATTCATACTTTGCAAGAGTTGGGGGATTCACAACCAACGAATTGAACAAGTTGGAGCTTGAATTTTTGTTCTTAATGGGGTTCAAATTGCATGTGAATGTGAGTGTGTTTGAGAGCTATTGTTGTCACTTGGAAAGAGAAGTTAGCATTGGAGGAGGGTACCACATAGAGAGCACATTGAGATGTGCAGAAGAAATCAAAAGAAGGCAAAACGAAGAGAGAAGATACAATCAGTTTGCTGGTGTTTTGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

231

Amino Acids

26.82

Weight (kDa)

8.83

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin PF08613 35 - 176 3e-36 Cyclin
Cyclin_N PF00134 82 - 176 3.2e-10 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014600)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45080
fragaria_vesca FvH4_7g10850
malus_domestica MD07G1113400.v1.1
prunus_persica Prupe.2G136400_v2.0.a1 Prupe.2G136400_v2.0.a1
pyrus_communis pycom07g09810
rosa_chinensis RchiOBHm_Chr1g0348831
rosa_laevigata RLG00000028623
rosa_multiflora Rmu_sc0032387.1_g000001
rosa_roxburghii Rroxscaffold_4G00306550
rosa_rugosa Rorug01G0198000
rosa_samantha Rh1AG215400 Rh1BG181800 Rh1CG199900 Rh1DG211600
rosa_wichuraiana Rw1G018250 Rw1G018360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 250
Acc65I GGTACC 1 cut(s) 597
AccB1I GGYRCC 1 cut(s) 597
AcsI RAATTY 2 cut(s) 439, 500
AfaI GTAC 4 cut(s) 185, 278, 416, 599
AfiI CCNNNNNNNGG 1 cut(s) 103
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 4 cut(s) 422, 484, 500, 523
AhlI ACTAGT 1 cut(s) 100
AjuI GAANNNNNNNTTGG 2 cut(s) 570, 602
AluBI AGCT 3 cut(s) 287, 496, 555
AluI AGCT 3 cut(s) 287, 496, 555
Alw21I GWGCWC 1 cut(s) 614
Alw26I GTCTC 1 cut(s) 224
AoxI GGCC 1 cut(s) 290
ApeKI GCWGC 2 cut(s) 171, 174
ApoI RAATTY 2 cut(s) 439, 500
Asp718I GGTACC 1 cut(s) 597
AspS9I GGNCC 1 cut(s) 290
BanI GGYRCC 1 cut(s) 597
BbsI GAAGAC 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 614
BbvI GCAGC 2 cut(s) 183, 186
BceAI ACGGC 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 224
BcuI ACTAGT 1 cut(s) 100
BfaI CTAG 2 cut(s) 101, 210
BfmI CTRYAG 1 cut(s) 689
BisI GCNGC 2 cut(s) 172, 175
BlsI GCNGC 2 cut(s) 173, 176
BmgT120I GGNCC 1 cut(s) 290
BmiI GGNNCC 3 cut(s) 149, 383, 599
BmsI GCATC 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 429
BsaJI CCNNGG 2 cut(s) 179, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 179, 192
BseLI CCNNNNNNNGG 1 cut(s) 103
BseRI GAGGAG 2 cut(s) 374, 606
BseXI GCAGC 2 cut(s) 183, 186
BseYI CCCAGC 1 cut(s) 287
BsgI GTGCAG 1 cut(s) 645
BshFI GGCC 1 cut(s) 292
BshNI GGYRCC 1 cut(s) 597
BsiHKAI GWGCWC 1 cut(s) 614
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 224
BsnI GGCC 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 614
Bsp143I GATC 3 cut(s) 33, 325, 357
BspANI GGCC 1 cut(s) 292
BspHI TCATGA 1 cut(s) 226
BspLI GGNNCC 3 cut(s) 149, 383, 599
BspT107I GGYRCC 1 cut(s) 597
BssECI CCNNGG 2 cut(s) 179, 192
BssMI GATC 3 cut(s) 33, 325, 357
BssT1I CCWWGG 2 cut(s) 179, 192
Bst6I CTCTTC 1 cut(s) 648
BstDEI CTNAG 2 cut(s) 50, 259
BstKTI GATC 3 cut(s) 36, 328, 360
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 3 cut(s) 33, 325, 357
BstNSI RCATGY 2 cut(s) 190, 533
BstSFI CTRYAG 1 cut(s) 689
BstV1I GCAGC 2 cut(s) 183, 186
BstV2I GAAGAC 1 cut(s) 429
BsuRI GGCC 1 cut(s) 292
CciI TCATGA 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 290
Csp6I GTAC 4 cut(s) 184, 277, 415, 598
CviAII CATG 6 cut(s) 139, 187, 199, 227, 427, 530
CviJI RGCY 7 cut(s) 177, 287, 292, 382, 407, 496, 555
CviKI_1 RGCY 7 cut(s) 177, 287, 292, 382, 407, 496, 555
CviQI GTAC 4 cut(s) 184, 277, 415, 598
DdeI CTNAG 2 cut(s) 50, 259
DpnI GATC 3 cut(s) 35, 327, 359
DpnII GATC 3 cut(s) 33, 325, 357
DrdI GACNNNNNNGTC 1 cut(s) 250
DseDI GACNNNNNNGTC 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Eco130I CCWWGG 2 cut(s) 179, 192
EcoT14I CCWWGG 2 cut(s) 179, 192
ErhI CCWWGG 2 cut(s) 179, 192
FaeI CATG 6 cut(s) 142, 190, 202, 230, 430, 533
FatI CATG 6 cut(s) 138, 186, 198, 226, 426, 529
Fnu4HI GCNGC 2 cut(s) 172, 175
Fsp4HI GCNGC 2 cut(s) 172, 175
FspBI CTAG 2 cut(s) 101, 210
GluI GCNGC 2 cut(s) 172, 175
GsaI CCCAGC 1 cut(s) 291
HaeIII GGCC 1 cut(s) 292
Hin1II CATG 6 cut(s) 142, 190, 202, 230, 430, 533
HinfI GANTC 3 cut(s) 86, 232, 465
Hpy166II GTNNAC 1 cut(s) 279
Hpy188I TCNGA 4 cut(s) 30, 58, 91, 126
Hpy188III TCNNGA 2 cut(s) 227, 236
Hpy8I GTNNAC 1 cut(s) 279
HpyAV CCTTC 1 cut(s) 636
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 5 cut(s) 171, 350, 452, 529, 626
HpyF3I CTNAG 2 cut(s) 50, 259
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 6 cut(s) 142, 190, 202, 230, 430, 533
KpnI GGTACC 1 cut(s) 601
Kzo9I GATC 3 cut(s) 33, 325, 357
LmnI GCTCC 2 cut(s) 387, 493
LpnPI CCDG 8 cut(s) 164, 249, 254, 259, 273, 350, 360, 663
Lsp1109I GCAGC 2 cut(s) 183, 186
LweI GCATC 1 cut(s) 26
MaeI CTAG 2 cut(s) 101, 210
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 2 cut(s) 364, 563
MalI GATC 3 cut(s) 35, 327, 359
MboI GATC 3 cut(s) 33, 325, 357
MboII GAAGA 4 cut(s) 434, 641, 665, 672
MhlI GDGCHC 1 cut(s) 614
MluCI AATT 7 cut(s) 166, 246, 430, 439, 479, 500, 524
MlyI GAGTC 1 cut(s) 226
MmeI TCCRAC 1 cut(s) 471
MnlI CCTC 5 cut(s) 147, 258, 395, 584, 587
MseI TTAA 3 cut(s) 108, 354, 512
MslI CAYNNNNRTG 2 cut(s) 534, 619
NdeII GATC 3 cut(s) 33, 325, 357
NlaIII CATG 6 cut(s) 142, 190, 202, 230, 430, 533
NlaIV GGNNCC 3 cut(s) 149, 383, 599
NmuCI GTSAC 2 cut(s) 364, 563
NspI RCATGY 2 cut(s) 190, 533
PagI TCATGA 1 cut(s) 226
PciI ACATGT 1 cut(s) 186
PfeI GAWTC 2 cut(s) 86, 465
PkrI GCNGC 2 cut(s) 173, 176
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PscI ACATGT 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 287
PspN4I GGNNCC 3 cut(s) 149, 383, 599
PspPI GGNCC 1 cut(s) 290
RsaI GTAC 4 cut(s) 185, 278, 416, 599
RsaNI GTAC 4 cut(s) 184, 277, 415, 598
RseI CAYNNNNRTG 2 cut(s) 534, 619
SaqAI TTAA 3 cut(s) 108, 354, 512
SatI GCNGC 2 cut(s) 172, 175
Sau3AI GATC 3 cut(s) 33, 325, 357
Sau96I GGNCC 1 cut(s) 290
SchI GAGTC 1 cut(s) 226
SduI GDGCHC 1 cut(s) 614
SetI ASST 7 cut(s) 56, 243, 278, 289, 420, 498, 557
SfaNI GCATC 1 cut(s) 26
SfcI CTRYAG 1 cut(s) 689
SmiMI CAYNNNNRTG 2 cut(s) 534, 619
SpeI ACTAGT 1 cut(s) 100
Sse9I AATT 7 cut(s) 166, 246, 430, 439, 479, 500, 524
SspMI CTAG 2 cut(s) 101, 210
StyI CCWWGG 2 cut(s) 179, 192
TaiI ACGT 1 cut(s) 420
TasI AATT 7 cut(s) 166, 246, 430, 439, 479, 500, 524
TfiI GAWTC 2 cut(s) 86, 465
Tru1I TTAA 3 cut(s) 108, 354, 512
Tru9I TTAA 3 cut(s) 108, 354, 512
TseFI GTSAC 2 cut(s) 364, 563
TseI GCWGC 2 cut(s) 171, 174
Tsp45I GTSAC 2 cut(s) 364, 563
TspDTI ATGAA 3 cut(s) 215, 432, 443
XapI RAATTY 2 cut(s) 439, 500
XceI RCATGY 2 cut(s) 190, 533
XspI CTAG 2 cut(s) 101, 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.