Prupe.2G136400_v2.0.a1

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014600
Physical Location & Seq
Forward (+)
19403995 .. 19405200
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G136400.1

Sequence Viewer

Length: 693 bp
ATGGTTTCGTCATCAACATCAACATCTCTCATAATCTCTCCAAGAAAGCTCAGATCAGATTTGTATTCTTATTCATACCAAGAAGATTCAACTACCCCTCTGGTGGTTAATGTTCTTGCTTCTCTGATTGAGAGAAGCATGGCCAGGAACCAGAGGATTGCCAAGAGTTGCAGCAGCCCTTGGTACATGTCCAAGGACATGAAGAAGACTCGGATTTTTGAGTGCCATGAGACCCCGGACATGACAATCCAATCCTATCTGGAGAGGATTTTCAGGTACACCAGAGCTGGACCTTCTGTGTATGTGGTTGCATATGTTTATATTGATCGGTTTTGCCAGAACAATCCTGGGTTTAAGATCAATGTCACAAATGTTCATAGGCTTCTCATCACAACTATAATGGTGGCTTCTAAGTATGTTGAAGACATGAATTACAGAAATTCTTACTTTGCAAGAGTTGGGGGATTGACAACCAATGAATTGAACAAGTTGGAGCTTGAGTTTTTGTTCTTGATGGGGTTCAAATTGCACGTCAATGTGAGTGTGTTTGAGAGCTACTGTTGTCACTTGGAAAGAGAAGTTAGTATTGGGGGAGGCTACCACATAGAGAGCACATTGAGATGTGCAGAAGAAATCAAAACCAGGCAAAATGAAGAGAGAAGATATAACCAGTTTGCTGGTCTTTTGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

231

Amino Acids

26.7

Weight (kDa)

8.83

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014600)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45080
fragaria_vesca FvH4_7g10850
malus_domestica MD07G1113400.v1.1
prunus_persica Prupe.2G136400_v2.0.a1 Prupe.2G136400_v2.0.a1
pyrus_communis pycom07g09810
rosa_chinensis RchiOBHm_Chr1g0348831
rosa_laevigata RLG00000028623
rosa_multiflora Rmu_sc0032387.1_g000001
rosa_roxburghii Rroxscaffold_4G00306550
rosa_rugosa Rorug01G0198000
rosa_samantha Rh1AG215400 Rh1BG181800 Rh1CG199900 Rh1DG211600
rosa_wichuraiana Rw1G018250 Rw1G018360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 691
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 1 cut(s) 439
AfaI GTAC 2 cut(s) 185, 278
AfiI CCNNNNNNNGG 1 cut(s) 103
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 4 cut(s) 90, 422, 484, 523
AjiI CACGTC 1 cut(s) 532
AjnI CCWGG 3 cut(s) 143, 346, 641
AjuI GAANNNNNNNTTGG 2 cut(s) 570, 602
AluBI AGCT 4 cut(s) 49, 287, 496, 555
AluI AGCT 4 cut(s) 49, 287, 496, 555
Alw21I GWGCWC 1 cut(s) 614
Alw26I GTCTC 1 cut(s) 224
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 2 cut(s) 171, 174
ApoI RAATTY 1 cut(s) 439
ArsI GACNNNNNNTTYG 2 cut(s) 516, 548
AspS9I GGNCC 1 cut(s) 290
AsuC2I CCSGG 1 cut(s) 236
AvaII GGWCC 1 cut(s) 290
BalI TGGCCA 1 cut(s) 143
BbsI GAAGAC 2 cut(s) 212, 429
Bbv12I GWGCWC 1 cut(s) 614
BbvI GCAGC 2 cut(s) 183, 186
BccI CCATC 1 cut(s) 508
BciT130I CCWGG 3 cut(s) 145, 348, 643
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 224
BisI GCNGC 2 cut(s) 172, 175
BlsI GCNGC 2 cut(s) 173, 176
Bme1390I CCNGG 4 cut(s) 145, 236, 348, 643
Bme18I GGWCC 1 cut(s) 290
BmgBI CACGTC 1 cut(s) 532
BmgT120I GGNCC 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 4 cut(s) 145, 236, 348, 643
BpiI GAAGAC 2 cut(s) 212, 429
BpmI CTGGAG 1 cut(s) 281
BpuEI CTTGAG 1 cut(s) 518
BpuMI CCSGG 1 cut(s) 236
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 4 cut(s) 179, 192, 234, 347
BsaXI ACNNNNNCTCC 2 cut(s) 485, 515
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 670
BseBI CCWGG 3 cut(s) 145, 348, 643
BseDI CCNNGG 4 cut(s) 179, 192, 234, 347
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 64
BseNI ACTGG 1 cut(s) 670
BseXI GCAGC 2 cut(s) 183, 186
BsgI GTGCAG 1 cut(s) 645
BshFI GGCC 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 614
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 224
BsnI GGCC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 614
Bsp143I GATC 3 cut(s) 53, 325, 357
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 224
BsrI ACTGG 1 cut(s) 670
BssECI CCNNGG 4 cut(s) 179, 192, 234, 347
BssMI GATC 3 cut(s) 53, 325, 357
BssT1I CCWWGG 2 cut(s) 179, 192
Bst2UI CCWGG 3 cut(s) 145, 348, 643
Bst4CI ACNGT 1 cut(s) 560
Bst6I CTCTTC 1 cut(s) 648
BstDEI CTNAG 2 cut(s) 50, 411
BstKTI GATC 3 cut(s) 56, 328, 360
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 3 cut(s) 53, 325, 357
BstNI CCWGG 3 cut(s) 145, 348, 643
BstNSI RCATGY 1 cut(s) 190
BstSCI CCNGG 4 cut(s) 143, 234, 346, 641
BstV1I GCAGC 2 cut(s) 183, 186
BstV2I GAAGAC 2 cut(s) 212, 429
BstXI CCANNNNNNTGG 1 cut(s) 677
BsuRI GGCC 1 cut(s) 143
BtrI CACGTC 1 cut(s) 532
Cfr13I GGNCC 1 cut(s) 290
Csp6I GTAC 2 cut(s) 184, 277
CviAII CATG 6 cut(s) 139, 187, 199, 227, 241, 427
CviJI RGCY 9 cut(s) 49, 143, 177, 287, 382, 407, 496, 555, 597
CviKI_1 RGCY 9 cut(s) 49, 143, 177, 287, 382, 407, 496, 555, 597
CviQI GTAC 2 cut(s) 184, 277
DdeI CTNAG 2 cut(s) 50, 411
DpnI GATC 3 cut(s) 55, 327, 359
DpnII GATC 3 cut(s) 53, 325, 357
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Eco130I CCWWGG 2 cut(s) 179, 192
Eco31I GGTCTC 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 290
EcoRII CCWGG 3 cut(s) 143, 346, 641
EcoT14I CCWWGG 2 cut(s) 179, 192
ErhI CCWWGG 2 cut(s) 179, 192
FaeI CATG 6 cut(s) 142, 190, 202, 230, 244, 430
FatI CATG 6 cut(s) 138, 186, 198, 226, 240, 426
FauNDI CATATG 1 cut(s) 313
Fnu4HI GCNGC 2 cut(s) 172, 175
Fsp4HI GCNGC 2 cut(s) 172, 175
GluI GCNGC 2 cut(s) 172, 175
GsuI CTGGAG 1 cut(s) 281
HaeIII GGCC 1 cut(s) 143
HapII CCGG 1 cut(s) 236
Hin1II CATG 6 cut(s) 142, 190, 202, 230, 244, 430
HinfI GANTC 2 cut(s) 86, 208
HpaII CCGG 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 279
Hpy188I TCNGA 4 cut(s) 53, 58, 126, 213
Hpy188III TCNNGA 2 cut(s) 260, 511
Hpy8I GTNNAC 1 cut(s) 279
HpyAV CCTTC 1 cut(s) 303
HpyCH4III ACNGT 1 cut(s) 560
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 5 cut(s) 171, 311, 452, 529, 626
HpyF3I CTNAG 2 cut(s) 50, 411
HpySE526I ACGT 1 cut(s) 531
Hsp92II CATG 6 cut(s) 142, 190, 202, 230, 244, 430
Kzo9I GATC 3 cut(s) 53, 325, 357
LmnI GCTCC 1 cut(s) 493
Lsp1109I GCAGC 2 cut(s) 183, 186
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 2 cut(s) 364, 563
MalI GATC 3 cut(s) 55, 327, 359
MboI GATC 3 cut(s) 53, 325, 357
MboII GAAGA 7 cut(s) 95, 214, 217, 434, 641, 665, 672
MhlI GDGCHC 1 cut(s) 614
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 4 cut(s) 430, 439, 479, 524
MluNI TGGCCA 1 cut(s) 143
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 471
MnlI CCTC 4 cut(s) 108, 147, 258, 587
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
MseI TTAA 2 cut(s) 108, 354
MslI CAYNNNNRTG 2 cut(s) 534, 619
Msp20I TGGCCA 1 cut(s) 143
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 4 cut(s) 145, 236, 348, 643
MvaI CCWGG 3 cut(s) 145, 348, 643
NciI CCSGG 1 cut(s) 236
NdeI CATATG 1 cut(s) 313
NdeII GATC 3 cut(s) 53, 325, 357
NlaIII CATG 6 cut(s) 142, 190, 202, 230, 244, 430
NlaIV GGNNCC 1 cut(s) 149
NmuCI GTSAC 2 cut(s) 364, 563
NspI RCATGY 1 cut(s) 190
PciI ACATGT 1 cut(s) 186
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 2 cut(s) 173, 176
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PscI ACATGT 1 cut(s) 186
PsiI TTATAA 1 cut(s) 691
Psp6I CCWGG 3 cut(s) 143, 346, 641
PspGI CCWGG 3 cut(s) 143, 346, 641
PspN4I GGNNCC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 290
RsaI GTAC 2 cut(s) 185, 278
RsaNI GTAC 2 cut(s) 184, 277
RseI CAYNNNNRTG 2 cut(s) 534, 619
SaqAI TTAA 2 cut(s) 108, 354
SatI GCNGC 2 cut(s) 172, 175
Sau3AI GATC 3 cut(s) 53, 325, 357
Sau96I GGNCC 1 cut(s) 290
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 4 cut(s) 145, 236, 348, 643
SduI GDGCHC 1 cut(s) 614
SetI ASST 7 cut(s) 51, 278, 289, 295, 498, 534, 557
SinI GGWCC 1 cut(s) 290
SmiMI CAYNNNNRTG 2 cut(s) 534, 619
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
Sse9I AATT 4 cut(s) 430, 439, 479, 524
StyD4I CCNGG 4 cut(s) 143, 234, 346, 641
StyI CCWWGG 2 cut(s) 179, 192
TaaI ACNGT 1 cut(s) 560
TaiI ACGT 1 cut(s) 534
TasI AATT 4 cut(s) 430, 439, 479, 524
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 108, 354
Tru9I TTAA 2 cut(s) 108, 354
TseFI GTSAC 2 cut(s) 364, 563
TseI GCWGC 2 cut(s) 171, 174
Tsp45I GTSAC 2 cut(s) 364, 563
TspDTI ATGAA 6 cut(s) 63, 215, 365, 443, 492, 666
VpaK11BI GGWCC 1 cut(s) 290
XapI RAATTY 1 cut(s) 439
XceI RCATGY 1 cut(s) 190
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.