Rw1G018360

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0014600
Physical Location & Seq
Forward (+)
40435268 .. 40436058
791 bp
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UTR
Exon/CDS
Intron
Rw1G018360.1

Sequence Viewer

Length: 651 bp
ATGGTTTCCTCAACATCCCTTGTAATCTCTCCAAGAAAGTTCAGATCAGATTTGTACTCCTATCCATACCAAGCCGATTCAAACACCCCTTTGGTGGTTAATGTTCTTGCTTCTCTTATTGAGAGAAACATGGCCAGGAACCAGAGGATTTCAAAGAACTGCAGCCCTTGGTACTTGTCCAAAGACATGAAGAAGACTCGGATTTTCGAGTGCCACGAGACTCCGGACATGACGATTCAGTCGTATTTGGAGAGAATTTTCAGGTACACAAGAGCCGGGCCGTCTGTTTATGTGGTCGCTTATGTATATATCGATCGGTTTTGCCAGAACAATCCTGGTTTCCGAATCAATGTCACAAATGTGCACAGGTTACTCATCACAACTATAATGGTGGCTTCGAAATATGTAGAAGACATGAATTACAGAAATTCTTACTTTGCAAGAGTGGGGGGATTAACAACAAACGAGCTGAACAAGTTGGAGCTTGAGTTTCAGTTCTTGATGGGATTCAAGTTACATGTGAATGTGAGTGTAGAAGTCAGTATTGGAGGAGGCTATCAAATTGAGAGCACATTGAGATGTGCAGAAGAAATCAAAACAAGGCAAGATGAAGATAGAAGATATAACCAGTGTGTTGGTGTTTTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

216

Amino Acids

25.09

Weight (kDa)

9.05

Isoelectric Point (pI)

32.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin PF08613 34 - 172 2.1e-34 Cyclin
Cyclin_N PF00134 79 - 172 6.4e-08 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014600)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45080
fragaria_vesca FvH4_7g10850
malus_domestica MD07G1113400.v1.1
prunus_persica Prupe.2G136400_v2.0.a1 Prupe.2G136400_v2.0.a1
pyrus_communis pycom07g09810
rosa_chinensis RchiOBHm_Chr1g0348831
rosa_laevigata RLG00000028623
rosa_multiflora Rmu_sc0032387.1_g000001
rosa_roxburghii Rroxscaffold_4G00306550
rosa_rugosa Rorug01G0198000
rosa_samantha Rh1AG215400 Rh1BG181800 Rh1CG199900 Rh1DG211600
rosa_wichuraiana Rw1G018250 Rw1G018360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 238
AccIII TCCGGA 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 2 cut(s) 255, 427
AfaI GTAC 3 cut(s) 56, 173, 266
AfiI CCNNNNNNNGG 1 cut(s) 94
AflIII ACRYGT 1 cut(s) 517
AgsI TTSAA 3 cut(s) 81, 153, 511
AjnI CCWGG 2 cut(s) 134, 334
AjuI GAANNNNNNNTTGG 2 cut(s) 528, 560
AleI CACNNNNGTG 1 cut(s) 359
AluBI AGCT 2 cut(s) 469, 484
AluI AGCT 2 cut(s) 469, 484
Alw21I GWGCWC 2 cut(s) 366, 572
Alw26I GTCTC 1 cut(s) 212
Alw44I GTGCAC 1 cut(s) 362
Aor13HI TCCGGA 1 cut(s) 223
AoxI GGCC 2 cut(s) 132, 278
ApaLI GTGCAC 1 cut(s) 362
ApeKI GCWGC 1 cut(s) 162
ApoI RAATTY 2 cut(s) 255, 427
AspS9I GGNCC 1 cut(s) 278
AsuC2I CCSGG 1 cut(s) 277
AsuII TTCGAA 1 cut(s) 398
BaeGI GKGCMC 1 cut(s) 366
BalI TGGCCA 1 cut(s) 134
BauI CACGAG 1 cut(s) 215
BbsI GAAGAC 2 cut(s) 200, 417
Bbv12I GWGCWC 2 cut(s) 366, 572
BbvI GCAGC 1 cut(s) 174
BccI CCATC 1 cut(s) 496
BceAI ACGGC 1 cut(s) 265
BciT130I CCWGG 2 cut(s) 136, 336
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 212
BfmI CTRYAG 1 cut(s) 160
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
Bme1390I CCNGG 3 cut(s) 136, 277, 336
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 140
BmrFI CCNGG 3 cut(s) 136, 277, 336
BpiI GAAGAC 2 cut(s) 200, 417
Bpu14I TTCGAA 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 506
BpuMI CCSGG 1 cut(s) 277
Bsa29I ATCGAT 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 473, 503
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 628
BseAI TCCGGA 1 cut(s) 223
BseBI CCWGG 2 cut(s) 136, 336
BseCI ATCGAT 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 628
BseRI GAGGAG 1 cut(s) 564
BseSI GKGCMC 1 cut(s) 366
BseXI GCAGC 1 cut(s) 174
BsgI GTGCAG 1 cut(s) 603
Bsh1285I CGRYCG 1 cut(s) 316
BshFI GGCC 2 cut(s) 134, 280
BshVI ATCGAT 1 cut(s) 312
BsiEI CGRYCG 1 cut(s) 316
BsiHKAI GWGCWC 2 cut(s) 366, 572
BsiSI CCGG 2 cut(s) 224, 276
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 1 cut(s) 212
BsnI GGCC 2 cut(s) 134, 280
Bsp119I TTCGAA 1 cut(s) 398
Bsp1286I GDGCHC 2 cut(s) 366, 572
Bsp13I TCCGGA 1 cut(s) 223
Bsp143I GATC 2 cut(s) 44, 313
BspANI GGCC 2 cut(s) 134, 280
BspDI ATCGAT 1 cut(s) 312
BspEI TCCGGA 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 140
BspMAI CTGCAG 1 cut(s) 164
BspT104I TTCGAA 1 cut(s) 398
BsrI ACTGG 1 cut(s) 628
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 2 cut(s) 44, 313
BssSI CACGAG 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 167
Bst2BI CACGAG 1 cut(s) 215
Bst2UI CCWGG 2 cut(s) 136, 336
BstBI TTCGAA 1 cut(s) 398
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 2 cut(s) 47, 316
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 2 cut(s) 44, 313
BstMCI CGRYCG 1 cut(s) 316
BstNI CCWGG 2 cut(s) 136, 336
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 3 cut(s) 134, 275, 334
BstSFI CTRYAG 1 cut(s) 160
BstSLI GKGCMC 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 174
BstV2I GAAGAC 2 cut(s) 200, 417
BstXI CCANNNNNNTGG 1 cut(s) 635
Bsu15I ATCGAT 1 cut(s) 312
BsuRI GGCC 2 cut(s) 134, 280
BsuTUI ATCGAT 1 cut(s) 312
BtsCI GGATG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 635
Cfr13I GGNCC 1 cut(s) 278
ClaI ATCGAT 1 cut(s) 312
Csp6I GTAC 3 cut(s) 55, 172, 265
CviAII CATG 5 cut(s) 130, 187, 229, 415, 518
CviJI RGCY 9 cut(s) 74, 134, 165, 275, 280, 395, 469, 484, 555
CviKI_1 RGCY 9 cut(s) 74, 134, 165, 275, 280, 395, 469, 484, 555
CviQI GTAC 3 cut(s) 55, 172, 265
DpnI GATC 2 cut(s) 46, 315
DpnII GATC 2 cut(s) 44, 313
DrdI GACNNNNNNGTC 1 cut(s) 238
DseDI GACNNNNNNGTC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 134, 334
EcoT14I CCWWGG 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 5 cut(s) 133, 190, 232, 418, 521
FatI CATG 5 cut(s) 129, 186, 228, 414, 517
Fnu4HI GCNGC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 163
HaeIII GGCC 2 cut(s) 134, 280
HapII CCGG 2 cut(s) 224, 276
Hin1II CATG 5 cut(s) 133, 190, 232, 418, 521
HinfI GANTC 6 cut(s) 77, 196, 220, 235, 345, 507
HpaII CCGG 2 cut(s) 224, 276
Hpy166II GTNNAC 2 cut(s) 267, 364
Hpy188I TCNGA 4 cut(s) 44, 49, 201, 344
Hpy188III TCNNGA 2 cut(s) 224, 499
Hpy8I GTNNAC 2 cut(s) 267, 364
HpyCH4V TGCA 4 cut(s) 162, 364, 440, 584
Hsp92II CATG 5 cut(s) 133, 190, 232, 418, 521
Kpn2I TCCGGA 1 cut(s) 223
Kzo9I GATC 2 cut(s) 44, 313
LmnI GCTCC 1 cut(s) 481
Lsp1109I GCAGC 1 cut(s) 174
MaeIII GTNAC 3 cut(s) 352, 369, 513
MalI GATC 2 cut(s) 46, 315
MboI GATC 2 cut(s) 44, 313
MboII GAAGA 6 cut(s) 202, 205, 422, 599, 623, 630
MhlI GDGCHC 2 cut(s) 366, 572
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 4 cut(s) 255, 418, 427, 561
MluNI TGGCCA 1 cut(s) 134
MlyI GAGTC 2 cut(s) 190, 214
MmeI TCCRAC 1 cut(s) 459
MnlI CCTC 4 cut(s) 19, 138, 542, 545
Mox20I TGGCCA 1 cut(s) 134
MroI TCCGGA 1 cut(s) 223
MscI TGGCCA 1 cut(s) 134
MseI TTAA 2 cut(s) 99, 455
MslI CAYNNNNRTG 3 cut(s) 359, 522, 577
Msp20I TGGCCA 1 cut(s) 134
MspI CCGG 2 cut(s) 224, 276
MspR9I CCNGG 3 cut(s) 136, 277, 336
MvaI CCWGG 2 cut(s) 136, 336
NciI CCSGG 1 cut(s) 277
NdeII GATC 2 cut(s) 44, 313
NlaIII CATG 5 cut(s) 133, 190, 232, 418, 521
NlaIV GGNNCC 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 352
NspI RCATGY 1 cut(s) 521
NspV TTCGAA 1 cut(s) 398
OliI CACNNNNGTG 1 cut(s) 359
PciI ACATGT 1 cut(s) 517
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 239
PfeI GAWTC 4 cut(s) 77, 235, 345, 507
PkrI GCNGC 1 cut(s) 164
Ple19I CGATCG 1 cut(s) 316
PleI GAGTC 2 cut(s) 190, 214
PpsI GAGTC 2 cut(s) 190, 214
PscI ACATGT 1 cut(s) 517
Psp6I CCWGG 2 cut(s) 134, 334
PspGI CCWGG 2 cut(s) 134, 334
PspN4I GGNNCC 1 cut(s) 140
PspPI GGNCC 1 cut(s) 278
PstI CTGCAG 1 cut(s) 164
PvuI CGATCG 1 cut(s) 316
RsaI GTAC 3 cut(s) 56, 173, 266
RsaNI GTAC 3 cut(s) 55, 172, 265
RseI CAYNNNNRTG 3 cut(s) 359, 522, 577
SaqAI TTAA 2 cut(s) 99, 455
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 2 cut(s) 44, 313
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 2 cut(s) 190, 214
ScrFI CCNGG 3 cut(s) 136, 277, 336
SduI GDGCHC 2 cut(s) 366, 572
SetI ASST 4 cut(s) 266, 371, 471, 486
SfcI CTRYAG 1 cut(s) 160
SfuI TTCGAA 1 cut(s) 398
SmiMI CAYNNNNRTG 3 cut(s) 359, 522, 577
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
Sse9I AATT 4 cut(s) 255, 418, 427, 561
StyD4I CCNGG 3 cut(s) 134, 275, 334
StyI CCWWGG 1 cut(s) 167
TaqI TCGA 3 cut(s) 207, 312, 398
TasI AATT 4 cut(s) 255, 418, 427, 561
TatI WGTACW 1 cut(s) 54
TfiI GAWTC 4 cut(s) 77, 235, 345, 507
Tru1I TTAA 2 cut(s) 99, 455
Tru9I TTAA 2 cut(s) 99, 455
TscAI CASTG 1 cut(s) 635
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 1 cut(s) 162
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 3 cut(s) 203, 431, 624
TspRI CASTG 1 cut(s) 635
VneI GTGCAC 1 cut(s) 362
XapI RAATTY 2 cut(s) 255, 427
XceI RCATGY 1 cut(s) 521
XcmI CCANNNNNNNNNTGG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.