FvH4_7g13010

Domain of unknown function (DUF313)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016388
Physical Location & Seq
Forward (+)
11738547 .. 11740156
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13010.t1

Sequence Viewer

Length: 951 bp
ATGACAACAATCAAGGGAAAAGACACCAAGAGGAACATGAACCTGAAGATTGTCATCAAGAATGTTAAGAAGGTAGCCACCGTCATCGACGGCTCGACGAGCAAGAAGAAAAGTGTTGTGCGTTCATCAATCCCGGGGTCGAAACCTAGTTTAGAATTGTCCGAAATCATCATGACCATGCCCAAGGAACAAGTAAACTTGTTACTGCCGAAGTTACCACCTAAGAAACGATGGTTCGTATTATATCGACGAATGTTGACAAAGGCCAAGCCTGCAGCTTCAAAGATCACCAATGATATTCCTGTTTCGAAAAGGAAATACGATTTTGATGATCATGATAATCAGGAATATAGAGCTAGGGTTCCCAAGGTGAAACGTTTGAAGAAGGGCGTACCTGCAAGAACTAATACAGGTCCTGATTTGCCTGAAGATTACAAGCAAATCATTCTCGGCAGACTGAAGGGGAAGCACTTGACTATGTTGATAGGGAAGAGTTTAGATGATAGGGATGTAAAGTGCGACAAGAGCATATTGACCTTGCCATCATATGAAACCCTAGCTAAGAATTTCTTGGAAGATATTGAGATGGAAAGCCTTAAGAGGCACACAACCCTAAAGGTTCCATTGATAGATCCGAAATGCTTGAAGTGGTGGAAGATGTCGAAAGAGGAACTTTATGAGCCGAAATCCAACTGGAATGAGATTGTGGAGCAGAATGGTATGGTTAAAGGAGATAAGGTTCAAGTTTGGTCATTCCGGGCTAATAAGGATGAGAAGGAGGATCAGCTTCACTTGGCTCTTGTTTTGGTCAAGGGAGGTGAAAATCAAAAGGGTGATCATAACAAGAGTAGCCAAGAAAGTGACAGTACTAGTGAAGGTAGTACTGTGATCAATCAGAGTGAGGACAGTGCAAATGCAAGACACATGGAGATTGTCAAAGCCGAAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF313

Protein Analysis

317

Amino Acids

36.09

Weight (kDa)

9.66

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016388)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13010
malus_domestica MD01G1052000.v1.1
prunus_persica Prupe.2G154200_v2.0.a1
rosa_laevigata RLG00000008091 RLG00000028355
rosa_multiflora Rmu_sc0001599.1_g000013
rosa_roxburghii Rroxscaffold_5G00358980
rosa_rugosa Rorug01G0225200 Rorug04G0132500
rosa_samantha Rh1AG239400 Rh1BG210200 Rh1DG236900 Rh4AG192600 Rh4DG190500
rosa_wichuraiana Rw1G020780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 403
AclI AACGTT 1 cut(s) 376
AclWI GGATC 2 cut(s) 626, 789
AcsI RAATTY 1 cut(s) 565
AcuI CTGAAG 3 cut(s) 65, 447, 479
AfaI GTAC 3 cut(s) 393, 868, 883
AflII CTTAAG 1 cut(s) 596
AgsI TTSAA 4 cut(s) 282, 382, 646, 743
AhlI ACTAGT 1 cut(s) 869
AloI GAACNNNNNNTCC 2 cut(s) 723, 755
AluBI AGCT 4 cut(s) 278, 356, 560, 787
AluI AGCT 4 cut(s) 278, 356, 560, 787
AlwI GGATC 2 cut(s) 626, 789
AlwNI CAGNNNCTG 1 cut(s) 416
Ama87I CYCGRG 1 cut(s) 133
AoxI GGCC 1 cut(s) 264
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 565
AspS9I GGNCC 1 cut(s) 413
AsuC2I CCSGG 3 cut(s) 134, 135, 758
AsuHPI GGTGA 4 cut(s) 280, 382, 830, 845
AsuII TTCGAA 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 133
AvaII GGWCC 1 cut(s) 413
BbvI GCAGC 1 cut(s) 287
BccI CCATC 3 cut(s) 225, 550, 580
BceAI ACGGC 1 cut(s) 106
BclI TGATCA 3 cut(s) 331, 835, 888
BcnI CCSGG 3 cut(s) 134, 135, 758
BcuI ACTAGT 1 cut(s) 869
BfaI CTAG 4 cut(s) 147, 357, 557, 870
BfmI CTRYAG 1 cut(s) 273
BfrI CTTAAG 1 cut(s) 596
BfuAI ACCTGC 1 cut(s) 403
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
BmcAI AGTACT 2 cut(s) 868, 883
Bme1390I CCNGG 3 cut(s) 134, 135, 758
Bme18I GGWCC 1 cut(s) 413
BmeT110I CYCGRG 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 2 cut(s) 363, 621
BmrFI CCNGG 3 cut(s) 134, 135, 758
Bpu14I TTCGAA 1 cut(s) 308
BpuMI CCSGG 3 cut(s) 134, 135, 758
BsaBI GATNNNNATC 1 cut(s) 53
BsaJI CCNNGG 4 cut(s) 133, 134, 183, 366
BsaXI ACNNNNNCTCC 2 cut(s) 723, 753
Bse1I ACTGG 1 cut(s) 698
Bse8I GATNNNNATC 1 cut(s) 53
BseDI CCNNGG 4 cut(s) 133, 134, 183, 366
BseGI GGATG 2 cut(s) 514, 775
BseJI GATNNNNATC 1 cut(s) 53
BseNI ACTGG 1 cut(s) 698
BseXI GCAGC 1 cut(s) 287
BshFI GGCC 1 cut(s) 266
BsiHKCI CYCGRG 1 cut(s) 133
BsiSI CCGG 2 cut(s) 134, 757
BsnI GGCC 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 133
Bsp119I TTCGAA 1 cut(s) 308
Bsp143I GATC 6 cut(s) 285, 331, 631, 781, 835, 888
BspANI GGCC 1 cut(s) 266
BspHI TCATGA 2 cut(s) 171, 334
BspLI GGNNCC 2 cut(s) 363, 621
BspMAI CTGCAG 1 cut(s) 277
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 2 cut(s) 626, 789
BspT104I TTCGAA 1 cut(s) 308
BspTI CTTAAG 1 cut(s) 596
BsrI ACTGG 1 cut(s) 698
BssECI CCNNGG 4 cut(s) 133, 134, 183, 366
BssMI GATC 6 cut(s) 285, 331, 631, 781, 835, 888
BssT1I CCWWGG 2 cut(s) 183, 366
Bst4CI ACNGT 4 cut(s) 82, 866, 886, 908
Bst6I CTCTTC 1 cut(s) 485
BstAFI CTTAAG 1 cut(s) 596
BstBI TTCGAA 1 cut(s) 308
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 2 cut(s) 222, 561
BstF5I GGATG 2 cut(s) 514, 775
BstKTI GATC 6 cut(s) 288, 334, 634, 784, 838, 891
BstMBI GATC 6 cut(s) 285, 331, 631, 781, 835, 888
BstMWI GCNNNNNNNGC 3 cut(s) 99, 272, 525
BstSCI CCNGG 3 cut(s) 132, 133, 756
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 287
BstX2I RGATCY 1 cut(s) 631
BstYI RGATCY 1 cut(s) 631
BsuRI GGCC 1 cut(s) 266
BtsCI GGATG 2 cut(s) 514, 775
BtsIMutI CAGTG 1 cut(s) 913
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 273
CaiI CAGNNNCTG 1 cut(s) 416
CciI TCATGA 2 cut(s) 171, 334
Cfr13I GGNCC 1 cut(s) 413
Cfr9I CCCGGG 1 cut(s) 133
Csp6I GTAC 3 cut(s) 392, 867, 882
CviAII CATG 5 cut(s) 37, 172, 178, 335, 925
CviQI GTAC 3 cut(s) 392, 867, 882
DdeI CTNAG 2 cut(s) 222, 561
DpnI GATC 6 cut(s) 287, 333, 633, 783, 837, 890
DpnII GATC 6 cut(s) 285, 331, 631, 781, 835, 888
Eam1104I CTCTTC 1 cut(s) 485
EarI CTCTTC 1 cut(s) 485
Eco130I CCWWGG 2 cut(s) 183, 366
Eco47I GGWCC 1 cut(s) 413
Eco57I CTGAAG 3 cut(s) 65, 447, 479
Eco88I CYCGRG 1 cut(s) 133
EcoO109I RGGNCCY 1 cut(s) 413
EcoT14I CCWWGG 2 cut(s) 183, 366
ErhI CCWWGG 2 cut(s) 183, 366
FaeI CATG 5 cut(s) 40, 175, 181, 338, 928
FalI AAGNNNNNCTT 4 cut(s) 554, 586, 657, 689
FatI CATG 5 cut(s) 36, 171, 177, 334, 924
FauNDI CATATG 1 cut(s) 547
FbaI TGATCA 3 cut(s) 331, 835, 888
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 2 cut(s) 521, 782
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 4 cut(s) 147, 357, 557, 870
GluI GCNGC 1 cut(s) 276
HaeIII GGCC 1 cut(s) 266
HapII CCGG 2 cut(s) 134, 757
Hin1II CATG 5 cut(s) 40, 175, 181, 338, 928
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HpaII CCGG 2 cut(s) 134, 757
HphI GGTGA 4 cut(s) 280, 382, 830, 845
Hpy166II GTNNAC 2 cut(s) 196, 258
Hpy188I TCNGA 3 cut(s) 163, 636, 897
Hpy188III TCNNGA 5 cut(s) 58, 172, 335, 344, 416
Hpy8I GTNNAC 2 cut(s) 196, 258
Hpy99I CGWCG 3 cut(s) 92, 100, 252
HpyAV CCTTC 5 cut(s) 64, 379, 454, 769, 869
HpyCH4III ACNGT 4 cut(s) 82, 866, 886, 908
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 4 cut(s) 275, 398, 911, 917
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 272, 525
HpyF3I CTNAG 2 cut(s) 222, 561
HpySE526I ACGT 1 cut(s) 376
Hsp92II CATG 5 cut(s) 40, 175, 181, 338, 928
Ksp22I TGATCA 3 cut(s) 331, 835, 888
Kzo9I GATC 6 cut(s) 285, 331, 631, 781, 835, 888
LmnI GCTCC 1 cut(s) 709
Lsp1109I GCAGC 1 cut(s) 287
MaeI CTAG 4 cut(s) 147, 357, 557, 870
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 3 cut(s) 201, 213, 860
MalI GATC 6 cut(s) 287, 333, 633, 783, 837, 890
MboI GATC 6 cut(s) 285, 331, 631, 781, 835, 888
MboII GAAGA 7 cut(s) 58, 118, 394, 440, 502, 587, 667
MflI RGATCY 1 cut(s) 631
MluCI AATT 2 cut(s) 155, 565
MmeI TCCRAC 1 cut(s) 714
MnlI CCTC 6 cut(s) 24, 594, 661, 772, 809, 895
MseI TTAA 3 cut(s) 66, 597, 726
MslI CAYNNNNRTG 1 cut(s) 176
MspCI CTTAAG 1 cut(s) 596
MspI CCGG 2 cut(s) 134, 757
MspR9I CCNGG 3 cut(s) 134, 135, 758
MwoI GCNNNNNNNGC 3 cut(s) 99, 272, 525
NciI CCSGG 3 cut(s) 134, 135, 758
NdeI CATATG 1 cut(s) 547
NdeII GATC 6 cut(s) 285, 331, 631, 781, 835, 888
NlaIII CATG 5 cut(s) 40, 175, 181, 338, 928
NlaIV GGNNCC 2 cut(s) 363, 621
NmeAIII GCCGAG 1 cut(s) 429
NmuCI GTSAC 1 cut(s) 860
NspV TTCGAA 1 cut(s) 308
PagI TCATGA 2 cut(s) 171, 334
PkrI GCNGC 1 cut(s) 277
PpuMI RGGWCCY 1 cut(s) 413
Psp1406I AACGTT 1 cut(s) 376
Psp5II RGGWCCY 1 cut(s) 413
PspN4I GGNNCC 2 cut(s) 363, 621
PspPI GGNCC 1 cut(s) 413
PspPPI RGGWCCY 1 cut(s) 413
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 416
PsuI RGATCY 1 cut(s) 631
RsaI GTAC 3 cut(s) 393, 868, 883
RsaNI GTAC 3 cut(s) 392, 867, 882
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 3 cut(s) 66, 597, 726
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 6 cut(s) 285, 331, 631, 781, 835, 888
Sau96I GGNCC 1 cut(s) 413
ScaI AGTACT 2 cut(s) 868, 883
ScrFI CCNGG 3 cut(s) 134, 135, 758
SfcI CTRYAG 1 cut(s) 273
SfuI TTCGAA 1 cut(s) 308
SinI GGWCC 1 cut(s) 413
SmaI CCCGGG 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
SpeI ACTAGT 1 cut(s) 869
Sse9I AATT 2 cut(s) 155, 565
SspMI CTAG 4 cut(s) 147, 357, 557, 870
StyD4I CCNGG 3 cut(s) 132, 133, 756
StyI CCWWGG 2 cut(s) 183, 366
TaaI ACNGT 4 cut(s) 82, 866, 886, 908
TaiI ACGT 1 cut(s) 379
TaqI TCGA 6 cut(s) 87, 95, 140, 247, 308, 662
TasI AATT 2 cut(s) 155, 565
TatI WGTACW 2 cut(s) 866, 881
Tru1I TTAA 3 cut(s) 66, 597, 726
Tru9I TTAA 3 cut(s) 66, 597, 726
TscAI CASTG 1 cut(s) 913
TseFI GTSAC 1 cut(s) 860
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 860
TspDTI ATGAA 3 cut(s) 53, 114, 564
TspMI CCCGGG 1 cut(s) 133
TspRI CASTG 1 cut(s) 913
Vha464I CTTAAG 1 cut(s) 596
VpaK11BI GGWCC 1 cut(s) 413
XapI RAATTY 1 cut(s) 565
XmaI CCCGGG 1 cut(s) 133
XspI CTAG 4 cut(s) 147, 357, 557, 870
ZrmI AGTACT 2 cut(s) 868, 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.