RLG00000008091

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
25505695 .. 25506078
384 bp
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UTR
Exon/CDS
Intron
RLM00000008091

Sequence Viewer

Length: 384 bp
ATGGAGATCATCGAGAGGAATAGAACCAAGAAGATCATCATCATGAATGTCAAGAAGGCAGCCACCGTGGATAACTTGAAGATCAAGAAGGACGATGTTGTGCCCTCATCAACACAACCACCAGTGCCAAAAGCTCATAATACTTCATCAATGCTGGAAGGGGAATATAGTTTAGACTTGTCTGATATCATGACCATGCCTAAGACACAACTAAACTTGGTACTCCCACAGTTACCCCCTAAGAAACGATGGTTTGTATTATATCGACGAATGTTAATGAGGACCAACCCTGCAGCTACTGCCACTCATCATCTGCACAAAGAGATCAGTAATGGCATTCCTACATCGGAAAAAAAGTATGATTCTGATGATCTTGATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.52

Weight (kDa)

9.49

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016388)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 222
AgsI TTSAA 1 cut(s) 79
AluBI AGCT 2 cut(s) 134, 296
AluI AGCT 2 cut(s) 134, 296
AlwNI CAGNNNCTG 1 cut(s) 299
ApeKI GCWGC 2 cut(s) 59, 293
AspS9I GGNCC 1 cut(s) 282
AvaII GGWCC 1 cut(s) 282
BaeGI GKGCMC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 71, 305
BccI CCATC 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 291
BisI GCNGC 2 cut(s) 60, 294
BlsI GCNGC 2 cut(s) 61, 295
Bme18I GGWCC 1 cut(s) 282
BmgT120I GGNCC 1 cut(s) 282
BsaBI GATNNNNATC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 122
Bse8I GATNNNNATC 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 66
BseJI GATNNNNATC 1 cut(s) 38
BseNI ACTGG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 105
BseXI GCAGC 2 cut(s) 71, 305
BsgI GTGCAG 1 cut(s) 299
BsmI GAATGC 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 5 cut(s) 6, 33, 81, 324, 370
BspHI TCATGA 2 cut(s) 42, 189
BspMAI CTGCAG 1 cut(s) 295
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 5 cut(s) 6, 33, 81, 324, 370
Bst4CI ACNGT 2 cut(s) 67, 231
BstAPI GCANNNNNTGC 1 cut(s) 299
BstDEI CTNAG 2 cut(s) 201, 240
BstDSI CCRYGG 1 cut(s) 66
BstKTI GATC 5 cut(s) 9, 36, 84, 327, 373
BstMBI GATC 5 cut(s) 6, 33, 81, 324, 370
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstSFI CTRYAG 1 cut(s) 291
BstSLI GKGCMC 1 cut(s) 105
BstV1I GCAGC 2 cut(s) 71, 305
BtgI CCRYGG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 129
CaiI CAGNNNCTG 1 cut(s) 299
CciI TCATGA 2 cut(s) 42, 189
Cfr13I GGNCC 1 cut(s) 282
Csp6I GTAC 1 cut(s) 221
CviAII CATG 3 cut(s) 43, 190, 196
CviJI RGCY 3 cut(s) 62, 134, 296
CviKI_1 RGCY 3 cut(s) 62, 134, 296
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 2 cut(s) 201, 240
DpnI GATC 5 cut(s) 8, 35, 83, 326, 372
DpnII GATC 5 cut(s) 6, 33, 81, 324, 370
Eco32I GATATC 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 282
EcoRV GATATC 1 cut(s) 187
FaeI CATG 3 cut(s) 46, 193, 199
FaiI YATR 7 cut(s) 44, 138, 168, 191, 197, 262, 360
FatI CATG 3 cut(s) 42, 189, 195
Fnu4HI GCNGC 2 cut(s) 60, 294
Fsp4HI GCNGC 2 cut(s) 60, 294
GluI GCNGC 2 cut(s) 60, 294
Hin1II CATG 3 cut(s) 46, 193, 199
HinfI GANTC 1 cut(s) 362
Hpy188I TCNGA 3 cut(s) 184, 349, 367
Hpy188III TCNNGA 6 cut(s) 13, 43, 52, 85, 190, 374
Hpy99I CGWCG 1 cut(s) 270
HpyAV CCTTC 3 cut(s) 49, 82, 152
HpyCH4III ACNGT 2 cut(s) 67, 231
HpyCH4V TGCA 2 cut(s) 293, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpyF3I CTNAG 2 cut(s) 201, 240
Hsp92II CATG 3 cut(s) 46, 193, 199
Kzo9I GATC 5 cut(s) 6, 33, 81, 324, 370
LpnPI CCDG 3 cut(s) 135, 140, 303
Lsp1109I GCAGC 2 cut(s) 71, 305
MaeIII GTNAC 1 cut(s) 231
MalI GATC 5 cut(s) 8, 35, 83, 326, 372
MboI GATC 5 cut(s) 6, 33, 81, 324, 370
MboII GAAGA 2 cut(s) 43, 91
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 1 cut(s) 379
MnlI CCTC 3 cut(s) 9, 115, 273
MseI TTAA 1 cut(s) 275
MslI CAYNNNNRTG 2 cut(s) 41, 194
Mva1269I GAATGC 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 299
NdeII GATC 5 cut(s) 6, 33, 81, 324, 370
NlaIII CATG 3 cut(s) 46, 193, 199
PagI TCATGA 2 cut(s) 42, 189
PctI GAATGC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 362
PkrI GCNGC 2 cut(s) 61, 295
PspPI GGNCC 1 cut(s) 282
PstI CTGCAG 1 cut(s) 295
PstNI CAGNNNCTG 1 cut(s) 299
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
RseI CAYNNNNRTG 2 cut(s) 41, 194
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 2 cut(s) 60, 294
Sau3AI GATC 5 cut(s) 6, 33, 81, 324, 370
Sau96I GGNCC 1 cut(s) 282
SduI GDGCHC 1 cut(s) 105
SetI ASST 2 cut(s) 136, 298
SfcI CTRYAG 1 cut(s) 291
SinI GGWCC 1 cut(s) 282
SmiMI CAYNNNNRTG 2 cut(s) 41, 194
Sse9I AATT 1 cut(s) 379
TaaI ACNGT 2 cut(s) 67, 231
TaqI TCGA 2 cut(s) 12, 265
TasI AATT 1 cut(s) 379
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 1 cut(s) 129
TseI GCWGC 2 cut(s) 59, 293
TspDTI ATGAA 2 cut(s) 59, 135
TspRI CASTG 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.