Rh4AG192600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0016388
Physical Location & Seq
Reverse (-)
47401281 .. 47401667
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG192600.1

Sequence Viewer

Length: 387 bp
ATGAATGGAGATCATCGAGAGGAACAAACCAAGAAGATCATCATCATGAATGTCAAGAAGGCAGCCACCGCGGACGGCTTGAAGATCAAGAAGGATGATGTTGTGCCCTCATCAACACAACCACCAGTGCTGAAAGCTCATAATACTTCATCAAAGCTGGAAGGGGAATATAGTTTAGACTTGTCTGATATCATGACCATTCCTAAGGCACAACTAAACTTGGTACTCCCACAGTTACCCCCTAAGAAACGATGGTTTGTATTATATCGACGAATGTTAACGAGGACCAACCCTGCAGCTACTGCCACTCATCATCTGCACAAAAAGATCAGTAATGGGATTCCTACATCCAAAAGAAAGTATGATTCTGATGATCTTGATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.45

Weight (kDa)

9.76

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016388)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13010
malus_domestica MD01G1052000.v1.1
prunus_persica Prupe.2G154200_v2.0.a1
rosa_laevigata RLG00000008091 RLG00000028355
rosa_multiflora Rmu_sc0001599.1_g000013
rosa_roxburghii Rroxscaffold_5G00358980
rosa_rugosa Rorug01G0225200 Rorug04G0132500
rosa_samantha Rh1AG239400 Rh1BG210200 Rh1DG236900 Rh4AG192600 Rh4DG190500
rosa_wichuraiana Rw1G020780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 71
AciI CCGC 2 cut(s) 69, 71
AfaI GTAC 1 cut(s) 225
AgsI TTSAA 1 cut(s) 82
AluBI AGCT 3 cut(s) 137, 157, 299
AluI AGCT 3 cut(s) 137, 157, 299
AlwNI CAGNNNCTG 1 cut(s) 302
ApeKI GCWGC 2 cut(s) 62, 296
AspS9I GGNCC 1 cut(s) 285
AvaII GGWCC 1 cut(s) 285
AxyI CCTNAGG 1 cut(s) 204
BaeGI GKGCMC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 74, 308
BccI CCATC 1 cut(s) 246
BceAI ACGGC 1 cut(s) 91
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 2 cut(s) 63, 297
BlsI GCNGC 2 cut(s) 64, 298
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 285
BsaBI GATNNNNATC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 125
Bse21I CCTNAGG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 2 cut(s) 100, 347
BseJI GATNNNNATC 1 cut(s) 41
BseNI ACTGG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 108
BseXI GCAGC 2 cut(s) 74, 308
BsgI GTGCAG 1 cut(s) 302
Bsh1236I CGCG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 5 cut(s) 10, 36, 84, 327, 373
BspACI CCGC 2 cut(s) 69, 71
BspFNI CGCG 1 cut(s) 71
BspHI TCATGA 2 cut(s) 45, 192
BspMAI CTGCAG 1 cut(s) 298
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 5 cut(s) 10, 36, 84, 327, 373
Bst4CI ACNGT 1 cut(s) 234
BstAPI GCANNNNNTGC 1 cut(s) 302
BstDEI CTNAG 2 cut(s) 204, 243
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 2 cut(s) 100, 347
BstFNI CGCG 1 cut(s) 71
BstKTI GATC 5 cut(s) 13, 39, 87, 330, 376
BstMBI GATC 5 cut(s) 10, 36, 84, 327, 373
BstMWI GCNNNNNNNGC 2 cut(s) 68, 302
BstSFI CTRYAG 1 cut(s) 294
BstSLI GKGCMC 1 cut(s) 108
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 74, 308
Bsu36I CCTNAGG 1 cut(s) 204
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 2 cut(s) 100, 347
BtsIMutI CAGTG 1 cut(s) 132
CaiI CAGNNNCTG 1 cut(s) 302
CciI TCATGA 2 cut(s) 45, 192
Cfr13I GGNCC 1 cut(s) 285
Cfr42I CCGCGG 1 cut(s) 72
Csp6I GTAC 1 cut(s) 224
CviAII CATG 2 cut(s) 46, 193
CviJI RGCY 5 cut(s) 65, 78, 137, 157, 299
CviKI_1 RGCY 5 cut(s) 65, 78, 137, 157, 299
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 2 cut(s) 204, 243
DpnI GATC 5 cut(s) 12, 38, 86, 329, 375
DpnII GATC 5 cut(s) 10, 36, 84, 327, 373
Eco32I GATATC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 285
Eco81I CCTNAGG 1 cut(s) 204
EcoRV GATATC 1 cut(s) 190
FaeI CATG 2 cut(s) 49, 196
FaiI YATR 6 cut(s) 47, 141, 171, 194, 265, 363
FatI CATG 2 cut(s) 45, 192
Fnu4HI GCNGC 2 cut(s) 63, 297
FokI GGATG 2 cut(s) 107, 334
Fsp4HI GCNGC 2 cut(s) 63, 297
GluI GCNGC 2 cut(s) 63, 297
Hin1II CATG 2 cut(s) 49, 196
HincII GTYRAC 1 cut(s) 279
HindII GTYRAC 1 cut(s) 279
HinfI GANTC 2 cut(s) 340, 365
HpaI GTTAAC 1 cut(s) 279
Hpy166II GTNNAC 1 cut(s) 279
Hpy188I TCNGA 2 cut(s) 187, 370
Hpy188III TCNNGA 6 cut(s) 17, 46, 55, 88, 193, 377
Hpy8I GTNNAC 1 cut(s) 279
Hpy99I CGWCG 1 cut(s) 273
HpyAV CCTTC 3 cut(s) 52, 85, 155
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4V TGCA 2 cut(s) 296, 319
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 302
HpyF3I CTNAG 2 cut(s) 204, 243
Hsp92II CATG 2 cut(s) 49, 196
KspAI GTTAAC 1 cut(s) 279
KspI CCGCGG 1 cut(s) 72
Kzo9I GATC 5 cut(s) 10, 36, 84, 327, 373
LpnPI CCDG 3 cut(s) 138, 143, 306
Lsp1109I GCAGC 2 cut(s) 74, 308
MaeIII GTNAC 1 cut(s) 234
MalI GATC 5 cut(s) 12, 38, 86, 329, 375
MboI GATC 5 cut(s) 10, 36, 84, 327, 373
MboII GAAGA 2 cut(s) 46, 94
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 1 cut(s) 382
MnlI CCTC 3 cut(s) 13, 118, 276
MseI TTAA 1 cut(s) 278
MslI CAYNNNNRTG 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 71
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 68, 302
NdeII GATC 5 cut(s) 10, 36, 84, 327, 373
NlaIII CATG 2 cut(s) 49, 196
PagI TCATGA 2 cut(s) 45, 192
PfeI GAWTC 2 cut(s) 340, 365
PkrI GCNGC 2 cut(s) 64, 298
PspPI GGNCC 1 cut(s) 285
PstI CTGCAG 1 cut(s) 298
PstNI CAGNNNCTG 1 cut(s) 302
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 44
SacII CCGCGG 1 cut(s) 72
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 2 cut(s) 63, 297
Sau3AI GATC 5 cut(s) 10, 36, 84, 327, 373
Sau96I GGNCC 1 cut(s) 285
SduI GDGCHC 1 cut(s) 108
SetI ASST 3 cut(s) 139, 159, 301
SfcI CTRYAG 1 cut(s) 294
Sfr303I CCGCGG 1 cut(s) 72
SgrBI CCGCGG 1 cut(s) 72
SinI GGWCC 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 44
Sse9I AATT 1 cut(s) 382
SsiI CCGC 2 cut(s) 69, 71
TaaI ACNGT 1 cut(s) 234
TaqI TCGA 2 cut(s) 16, 268
TasI AATT 1 cut(s) 382
TfiI GAWTC 2 cut(s) 340, 365
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 1 cut(s) 132
TseI GCWGC 2 cut(s) 62, 296
TspDTI ATGAA 3 cut(s) 17, 62, 138
TspRI CASTG 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.