Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0015176

Physical Location & Seq

Genomic Coordinates Forward (+)

11983534 .. 11987558

Gene Structure 4025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGACGCCGACGACGAGACCACCGCGGCGATGATCGACGACGAGATCTACGCCAACGGCGGCGGCGAGGACGAGAAGCGCAACCGCCCCATCATCTCCGGCGAGCCGCTCGACGTGGAGGCCTACGCGAGCCTCTACGGCGGTCGGACAAAGATCTCGCGGCTGCTGTTCATCGCCGAGCAGAGCCGCGGCTGCCGCAACGAGGCGATGGAGCTGGAGGCGCTGAGGATGGCGTATGATGAGGTAAAGAAGGGAGAGAACACGCAGTGGTTTAGGGACGTGGCGCAGAAGATCGACGGGAGGTTGGGGCTGGAGTATCAGATGGACTTGGCGTGGTGCGAGTCGGTGGATAGGAGAGCCGAGCAGAAGAGGGAGAAGCTTGAGAATGAGCTCAATGCTTATAGAACAAATTTGATCAAAGAAAGCATAAGAATGGGCTACAATGATTTTGGAGATTTCCATTATTCTCATGGGCAACTTGGGGATGCTTTTAAGAACTATGTTCGTACTCGTGATTATTGCACTACATCAAAGCATATTGTTCATATGTGCATGTGTTCCATTCTGGTCAGCATTGAGATGGGTCAATTTACTCATGTCGCAAGCTATGTTAGCAAAGCAGAACAAACACAAGAGGCCCTTGACCCAATTACTGTTGCAAAACTTCGCTGTGCTGCTGGATTGGCTAACTTGGAAGCTAAGAAATACAAGCTTGCTGCTCGTAAGTTCTTGGATACTGGGCATGAGTTGGGAAACAACTACAATGAAGTCATTGCACCTCAAGATATTGCAACATATGGTGGGCTTTGTGCACTTGCAAGTTTTGACCGAGCAGAGCTGAAGAACAAAGTTATCGACAACTTGAATTTCCGGAACTTTTTAGAGTTGGTGCCTGAAATAAGGGAGGTTATTAATGATTTCTACTCAAGTCGTTATGCTTCATGCTTGGATTACCTTGGGAATCTCAAAGCAAACTTGTTGCTGGACATCCATTTGCATGATCACCTTGAGACGCTCTATGATCAGATCCGCAACAAGGCCCTCATCCAGTACACACACCCCTTTGTGTCTGTAGATCTAAACATGATGGCCAATGCTTTCAAAACTGATGTTGCAGGGTTGGAGAAAGAACTTGAAGCTTTGATAACTGACAACCAAGTTCAGGCTCGTATTGATTCTCACAACAAAATTCTATATGCACGTCATGCGGATCAAAGGAATGCAACTTTTCAGAGGGCCCTACAGACAGGGAATGAGTTTGATCGGGATGTGAAGTCGATGCTACTCAGGATAAATCTTTTCAAGCACGAAAGCAATCAAAAGCAATCAAAGAAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000338 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070646 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

447

Amino Acids

51.0

Weight (kDa)

5.71

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN7	PF10602	109 - 283	2.8e-55	26S proteasome subunit RPN7
PCI	PF01399	322 - 401	1.4e-17	PCI domain
CSN1_C	PF21151	405 - 430	1.9e-09	COP9 signalosome complex subunit 1, C-terminal helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61140
fragaria_vesca	FvH4_7g13330
malus_domestica	MD01G1050400.v1.1 MD07G1127800.v1.1
prunus_persica	Prupe.2G156700_v2.0.a1
pyrus_communis	pycom07g12320
rosa_chinensis	RchiOBHm_Chr1g0352641 RchiOBHm_Chr7g0198471
rosa_laevigata	RLG00000028324
rosa_multiflora	Rmu_sc0005118.1_g000005
rosa_roxburghii	Rroxscaffold_4G00302520
rosa_rugosa	Rorug01G0230400
rosa_samantha	Rh1AG243700 Rh1BG214300 Rh1CG227700 Rh1DG240400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	889
AccBSI	CCGCTC	1 cut(s)	109
AccII	CGCG	4 cut(s)	26, 128, 160, 189
AccIII	TCCGGA	1 cut(s)	870
AclWI	GGATC	2 cut(s)	1021, 1218
AcoI	YGGCCR	1 cut(s)	1089
AcsI	RAATTY	3 cut(s)	409, 865, 1188
AcuI	CTGAAG	1 cut(s)	860
AcyI	GRCGYC	1 cut(s)	6
AdeI	CACNNNGTG	1 cut(s)	267
AfaI	GTAC	2 cut(s)	508, 1052
AfiI	CCNNNNNNNGG	3 cut(s)	202, 1036, 1162
AgsI	TTSAA	4 cut(s)	865, 1102, 1136, 1303
AjiI	CACGTC	3 cut(s)	115, 280, 1202
AluBI	AGCT	8 cut(s)	214, 379, 391, 606, 698, 712, 838, 1139
AluI	AGCT	8 cut(s)	214, 379, 391, 606, 698, 712, 838, 1139
Alw21I	GWGCWC	2 cut(s)	393, 814
Alw26I	GTCTC	2 cut(s)	11, 1004
Alw44I	GTGCAC	1 cut(s)	810
AlwI	GGATC	2 cut(s)	1021, 1218
Aor13HI	TCCGGA	1 cut(s)	870
AoxI	GGCC	5 cut(s)	120, 636, 1038, 1089, 1236
ApaI	GGGCCC	1 cut(s)	1240
ApaLI	GTGCAC	1 cut(s)	810
ApeKI	GCWGC	4 cut(s)	163, 192, 674, 716
ApoI	RAATTY	3 cut(s)	409, 865, 1188
AseI	ATTAAT	1 cut(s)	912
AspLEI	GCGC	3 cut(s)	81, 223, 286
AspS9I	GGNCC	4 cut(s)	637, 1039, 1236, 1237
AsuHPI	GGTGA	1 cut(s)	995
BaeGI	GKGCMC	2 cut(s)	814, 1240
BalI	TGGCCA	1 cut(s)	1091
BanI	GGYRCC	1 cut(s)	889
BanII	GRGCYC	2 cut(s)	393, 1240
BauI	CACGAG	1 cut(s)	510
Bbv12I	GWGCWC	2 cut(s)	393, 814
BbvCI	CCTCAGC	1 cut(s)	224
BbvI	GCAGC	4 cut(s)	150, 179, 661, 703
BccI	CCATC	6 cut(s)	98, 202, 223, 316, 574, 1081
BceAI	ACGGC	2 cut(s)	73, 154
BciVI	GTATCC	1 cut(s)	727
BclI	TGATCA	3 cut(s)	414, 1000, 1021
BcoDI	GTCTC	2 cut(s)	11, 1004
BfmI	CTRYAG	2 cut(s)	1071, 1241
BfoI	RGCGCY	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	727
BglI	GCCNNNNNGGC	1 cut(s)	138
BglII	AGATCT	3 cut(s)	45, 153, 1075
BmgBI	CACGTC	3 cut(s)	115, 280, 1202
BmgT120I	GGNCC	4 cut(s)	637, 1039, 1236, 1237
BmiI	GGNNCC	2 cut(s)	891, 1238
BmrI	ACTGGG	1 cut(s)	747
BmsI	GCATC	2 cut(s)	475, 1269
BmuI	ACTGGG	1 cut(s)	747
BpmI	CTGGAG	2 cut(s)	236, 332
Bpu10I	CCTNAGC	1 cut(s)	224
BpuEI	CTTGAG	4 cut(s)	401, 765, 910, 1028
BsaHI	GRCGYC	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	3 cut(s)	24, 187, 955
BsaWI	WCCGGW	1 cut(s)	870
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 1036, 1162
Bse1I	ACTGG	2 cut(s)	742, 1048
Bse3DI	GCAATG	1 cut(s)	771
BseAI	TCCGGA	1 cut(s)	870
BseDI	CCNNGG	3 cut(s)	24, 187, 955
BseGI	GGATG	5 cut(s)	234, 490, 987, 1044, 1273
BseLI	CCNNNNNNNGG	3 cut(s)	202, 1036, 1162
BseMI	GCAATG	1 cut(s)	771
BseMII	CTCAG	2 cut(s)	215, 1300
BseNI	ACTGG	2 cut(s)	742, 1048
BseSI	GKGCMC	2 cut(s)	814, 1240
BseXI	GCAGC	4 cut(s)	150, 179, 661, 703
Bsh1236I	CGCG	4 cut(s)	26, 128, 160, 189
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	5 cut(s)	122, 638, 1040, 1091, 1238
BshNI	GGYRCC	1 cut(s)	889
BsiEI	CGRYCG	1 cut(s)	145
BsiHKAI	GWGCWC	2 cut(s)	393, 814
BsiSI	CCGG	2 cut(s)	99, 871
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	3 cut(s)	202, 1036, 1162
BsmAI	GTCTC	2 cut(s)	11, 1004
BsmBI	CGTCTC	1 cut(s)	1004
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	1225
BsnI	GGCC	5 cut(s)	122, 638, 1040, 1091, 1238
Bso31I	GGTCTC	1 cut(s)	11
Bsp120I	GGGCCC	1 cut(s)	1236
Bsp1286I	GDGCHC	3 cut(s)	393, 814, 1240
Bsp13I	TCCGGA	1 cut(s)	870
BspANI	GGCC	5 cut(s)	122, 638, 1040, 1091, 1238
BspCNI	CTCAG	2 cut(s)	216, 1299
BspEI	TCCGGA	1 cut(s)	870
BspFNI	CGCG	4 cut(s)	26, 128, 160, 189
BspLI	GGNNCC	2 cut(s)	891, 1238
BspPI	GGATC	2 cut(s)	1021, 1218
BspT107I	GGYRCC	1 cut(s)	889
BspTNI	GGTCTC	1 cut(s)	11
BsrBI	CCGCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	771
BsrI	ACTGG	2 cut(s)	742, 1048
BssECI	CCNNGG	3 cut(s)	24, 187, 955
BssNI	GRCGYC	1 cut(s)	6
BssSI	CACGAG	1 cut(s)	510
BssT1I	CCWWGG	1 cut(s)	955
Bst2BI	CACGAG	1 cut(s)	510
Bst4CI	ACNGT	1 cut(s)	655
Bst6I	CTCTTC	1 cut(s)	362
BstACI	GRCGYC	1 cut(s)	6
BstAPI	GCANNNNNTGC	1 cut(s)	1205
BstC8I	GCNNGC	4 cut(s)	104, 130, 604, 714
BstDEI	CTNAG	3 cut(s)	224, 699, 1286
BstDSI	CCRYGG	2 cut(s)	24, 187
BstF5I	GGATG	5 cut(s)	234, 490, 987, 1044, 1273
BstFNI	CGCG	4 cut(s)	26, 128, 160, 189
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	3 cut(s)	81, 223, 286
BstMAI	GTCTC	2 cut(s)	11, 1004
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	7 cut(s)	138, 192, 195, 220, 612, 683, 1205
BstNSI	RCATGY	1 cut(s)	556
BstSFI	CTRYAG	2 cut(s)	1071, 1241
BstSLI	GKGCMC	2 cut(s)	814, 1240
BstUI	CGCG	4 cut(s)	26, 128, 160, 189
BstV1I	GCAGC	4 cut(s)	150, 179, 661, 703
BstX2I	RGATCY	4 cut(s)	45, 153, 1026, 1075
BstYI	RGATCY	4 cut(s)	45, 153, 1026, 1075
BsuI	GTATCC	1 cut(s)	727
BsuRI	GGCC	5 cut(s)	122, 638, 1040, 1091, 1238
BtgI	CCRYGG	2 cut(s)	24, 187
BtgZI	GCGATG	3 cut(s)	44, 157, 221
BtrI	CACGTC	3 cut(s)	115, 280, 1202
BtsCI	GGATG	5 cut(s)	234, 490, 987, 1044, 1273
BtsI	GCAGTG	1 cut(s)	272
BtsIMutI	CAGTG	1 cut(s)	272
Cac8I	GCNNGC	4 cut(s)	104, 130, 604, 714
CfoI	GCGC	3 cut(s)	81, 223, 286
Cfr13I	GGNCC	4 cut(s)	637, 1039, 1236, 1237
Cfr42I	CCGCGG	2 cut(s)	27, 190
CseI	GACGC	2 cut(s)	14, 1021
Csp6I	GTAC	2 cut(s)	507, 1051
CviAII	CATG	8 cut(s)	470, 553, 596, 743, 942, 998, 1084, 1205
CviQI	GTAC	2 cut(s)	507, 1051
DdeI	CTNAG	3 cut(s)	224, 699, 1286
DraIII	CACNNNGTG	1 cut(s)	267
EaeI	YGGCCR	1 cut(s)	1089
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
Ecl136II	GAGCTC	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	955
Eco147I	AGGCCT	1 cut(s)	122
Eco24I	GRGCYC	2 cut(s)	393, 1240
Eco31I	GGTCTC	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	860
EcoICRI	GAGCTC	1 cut(s)	391
EcoO109I	RGGNCCY	4 cut(s)	637, 1039, 1236, 1237
EcoT14I	CCWWGG	1 cut(s)	955
EcoT38I	GRGCYC	2 cut(s)	393, 1240
ErhI	CCWWGG	1 cut(s)	955
Esp3I	CGTCTC	1 cut(s)	1004
FaeI	CATG	8 cut(s)	473, 556, 599, 746, 945, 1001, 1087, 1208
FalI	AAGNNNNNCTT	2 cut(s)	624, 656
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	8 cut(s)	469, 552, 595, 742, 941, 997, 1083, 1204
FauNDI	CATATG	2 cut(s)	546, 796
FbaI	TGATCA	3 cut(s)	414, 1000, 1021
FokI	GGATG	5 cut(s)	241, 497, 974, 1031, 1280
FriOI	GRGCYC	2 cut(s)	393, 1240
GlaI	GCGC	3 cut(s)	80, 222, 285
GsuI	CTGGAG	2 cut(s)	236, 332
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	5 cut(s)	122, 638, 1040, 1091, 1238
HapII	CCGG	2 cut(s)	99, 871
HgaI	GACGC	2 cut(s)	14, 1021
HhaI	GCGC	3 cut(s)	81, 223, 286
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	8 cut(s)	473, 556, 599, 746, 945, 1001, 1087, 1208
Hin6I	GCGC	3 cut(s)	79, 221, 284
HinP1I	GCGC	3 cut(s)	79, 221, 284
HindIII	AAGCTT	3 cut(s)	377, 710, 1137
HinfI	GANTC	3 cut(s)	341, 961, 1175
HpaII	CCGG	2 cut(s)	99, 871
HphI	GGTGA	1 cut(s)	995
Hpy166II	GTNNAC	2 cut(s)	812, 1053
Hpy188I	TCNGA	4 cut(s)	147, 321, 1026, 1233
Hpy188III	TCNNGA	6 cut(s)	512, 782, 871, 1265, 1288, 1338
Hpy8I	GTNNAC	2 cut(s)	812, 1053
Hpy99I	CGWCG	6 cut(s)	14, 17, 41, 44, 116, 299
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	655
HpyCH4IV	ACGT	3 cut(s)	114, 279, 1201
HpyF10VI	GCNNNNNNNGC	7 cut(s)	138, 192, 195, 220, 612, 683, 1205
HpyF3I	CTNAG	3 cut(s)	224, 699, 1286
HpySE526I	ACGT	3 cut(s)	114, 279, 1201
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	8 cut(s)	473, 556, 599, 746, 945, 1001, 1087, 1208
HspAI	GCGC	3 cut(s)	79, 221, 284
Kpn2I	TCCGGA	1 cut(s)	870
Ksp22I	TGATCA	3 cut(s)	414, 1000, 1021
KspI	CCGCGG	2 cut(s)	27, 190
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	4 cut(s)	150, 179, 661, 703
LweI	GCATC	2 cut(s)	475, 1269
MaeII	ACGT	3 cut(s)	114, 279, 1201
MbiI	CCGCTC	1 cut(s)	109
MboII	GAAGA	3 cut(s)	301, 379, 853
MflI	RGATCY	4 cut(s)	45, 153, 1026, 1075
MhlI	GDGCHC	3 cut(s)	393, 814, 1240
MlsI	TGGCCA	1 cut(s)	1091
MluCI	AATT	5 cut(s)	409, 587, 648, 865, 1188
MluNI	TGGCCA	1 cut(s)	1091
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	2 cut(s)	125, 1101
Mox20I	TGGCCA	1 cut(s)	1091
MroI	TCCGGA	1 cut(s)	870
MscI	TGGCCA	1 cut(s)	1091
MseI	TTAA	2 cut(s)	492, 912
MslI	CAYNNNNRTG	3 cut(s)	431, 578, 996
Msp20I	TGGCCA	1 cut(s)	1091
MspA1I	CMGCKG	2 cut(s)	26, 189
MspI	CCGG	2 cut(s)	99, 871
Mva1269I	GAATGC	1 cut(s)	1225
MvnI	CGCG	4 cut(s)	26, 128, 160, 189
MwoI	GCNNNNNNNGC	7 cut(s)	138, 192, 195, 220, 612, 683, 1205
NdeI	CATATG	2 cut(s)	546, 796
NlaIII	CATG	8 cut(s)	473, 556, 599, 746, 945, 1001, 1087, 1208
NlaIV	GGNNCC	2 cut(s)	891, 1238
NmeAIII	GCCGAG	2 cut(s)	202, 385
NspI	RCATGY	1 cut(s)	556
PceI	AGGCCT	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	2 cut(s)	12, 63
PctI	GAATGC	1 cut(s)	1225
PfeI	GAWTC	2 cut(s)	961, 1175
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PshBI	ATTAAT	1 cut(s)	912
Psp124BI	GAGCTC	1 cut(s)	393
PspN4I	GGNNCC	2 cut(s)	891, 1238
PspOMI	GGGCCC	1 cut(s)	1236
PspPI	GGNCC	4 cut(s)	637, 1039, 1236, 1237
PsuI	RGATCY	4 cut(s)	45, 153, 1026, 1075
RsaI	GTAC	2 cut(s)	508, 1052
RsaNI	GTAC	2 cut(s)	507, 1051
RseI	CAYNNNNRTG	3 cut(s)	431, 578, 996
SacI	GAGCTC	1 cut(s)	393
SacII	CCGCGG	2 cut(s)	27, 190
SaqAI	TTAA	2 cut(s)	492, 912
Sau96I	GGNCC	4 cut(s)	637, 1039, 1236, 1237
SchI	GAGTC	1 cut(s)	350
SduI	GDGCHC	3 cut(s)	393, 814, 1240
SfaNI	GCATC	2 cut(s)	475, 1269
SfcI	CTRYAG	2 cut(s)	1071, 1241
Sfr303I	CCGCGG	2 cut(s)	27, 190
SgrBI	CCGCGG	2 cut(s)	27, 190
SmiMI	CAYNNNNRTG	3 cut(s)	431, 578, 996
SmlI	CTYRAG	4 cut(s)	380, 780, 925, 1007
SmoI	CTYRAG	4 cut(s)	380, 780, 925, 1007
Sse9I	AATT	5 cut(s)	409, 587, 648, 865, 1188
SseBI	AGGCCT	1 cut(s)	122
SstI	GAGCTC	1 cut(s)	393
StuI	AGGCCT	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	955
TaaI	ACNGT	1 cut(s)	655
TaiI	ACGT	3 cut(s)	117, 282, 1204
TaqI	TCGA	5 cut(s)	36, 111, 294, 855, 1277
TaqII	GACCGA	1 cut(s)	843
TasI	AATT	5 cut(s)	409, 587, 648, 865, 1188
TatI	WGTACW	1 cut(s)	1050
TauI	GCSGC	8 cut(s)	29, 63, 66, 109, 163, 189, 192, 198
TfiI	GAWTC	2 cut(s)	961, 1175
Tru1I	TTAA	2 cut(s)	492, 912
Tru9I	TTAA	2 cut(s)	492, 912
TscAI	CASTG	1 cut(s)	272
TseI	GCWGC	4 cut(s)	163, 192, 674, 716
TspDTI	ATGAA	4 cut(s)	160, 533, 780, 930
TspRI	CASTG	1 cut(s)	272
VneI	GTGCAC	1 cut(s)	810
VspI	ATTAAT	1 cut(s)	912
XapI	RAATTY	3 cut(s)	409, 865, 1188
XceI	RCATGY	1 cut(s)	556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.