FvH4_7g13920

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016390
Physical Location & Seq
Reverse (-)
12395758 .. 12396231
474 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13920.t1

Sequence Viewer

Length: 474 bp
ATGAAGCACCACTTTTGTTCTTCAGGTGCTTTTCTCTTCATCTTCCTCATTATTCTTGTGACAATCTGTTTGAGCATTGAAGCTCAAACCTCCAATCCAAGTCGCAAACTAGTCAGTAAAAAGTCTCCTGTTGCATCCCAGCAGCATACAAAGGCAACCTTGACGATCAATAGCTTTGAGAAAGGTGGTGATGGTGGTGGACCGTCTGAATGTGACGGTAAATATCACTCTGATAACACCATGATCGTGGCAATGTCGACCAGGTGGTACAACGATGGGAAAAGGTGTTTTGACTACATTACCATAAGTGCTAATGGAAGGAGTGTGAAAGCCATGGTTGTTGATGAGTGTGACTCAACAAGAGGTTGTGCTGATGACATTGTTGATGGCTCTAAAGCTGTTTGGAAGGCCTTGGGAGTTAAGGAAAACAGCAGGGATTGGGGTGAAATGAAGGTATTCTGGTCTGACGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.24

Weight (kDa)

7.61

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 47 - 157 3.7e-32 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 6
AcyI GRCGYC 1 cut(s) 468
AfaI GTAC 1 cut(s) 269
AgsI TTSAA 1 cut(s) 80
AhlI ACTAGT 1 cut(s) 109
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 3 cut(s) 83, 174, 398
AluI AGCT 3 cut(s) 83, 174, 398
Alw26I GTCTC 1 cut(s) 129
AoxI GGCC 1 cut(s) 408
ApeKI GCWGC 1 cut(s) 142
ArsI GACNNNNNNTTYG 2 cut(s) 52, 84
Asp700I GAANNNNTTC 1 cut(s) 455
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 2 cut(s) 200, 455
AvaII GGWCC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 154
BccI CCATC 3 cut(s) 185, 269, 380
BciT130I CCWGG 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 129
BcuI ACTAGT 1 cut(s) 109
BfaI CTAG 2 cut(s) 110, 472
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme1390I CCNGG 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 1 cut(s) 143
BplI GAGNNNNNCTC 2 cut(s) 338, 370
BsaHI GRCGYC 1 cut(s) 468
BsaJI CCNNGG 2 cut(s) 333, 411
Bse3DI GCAATG 1 cut(s) 258
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 2 cut(s) 333, 411
BseGI GGATG 1 cut(s) 134
BseMI GCAATG 1 cut(s) 258
BseXI GCAGC 1 cut(s) 154
BseYI CCCAGC 1 cut(s) 138
BshFI GGCC 1 cut(s) 410
BsmAI GTCTC 1 cut(s) 129
BsnI GGCC 1 cut(s) 410
Bsp143I GATC 2 cut(s) 165, 243
Bsp19I CCATGG 1 cut(s) 333
BspANI GGCC 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 258
BssECI CCNNGG 2 cut(s) 333, 411
BssMI GATC 2 cut(s) 165, 243
BssNI GRCGYC 1 cut(s) 468
BssT1I CCWWGG 2 cut(s) 333, 411
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 2 cut(s) 204, 218
Bst6I CTCTTC 1 cut(s) 41
BstACI GRCGYC 1 cut(s) 468
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 134
BstKTI GATC 2 cut(s) 168, 246
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 2 cut(s) 165, 243
BstNI CCWGG 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 154
BstXI CCANNNNNNTGG 1 cut(s) 247
BsuRI GGCC 1 cut(s) 410
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 200
CsiI ACCWGGT 1 cut(s) 260
Csp6I GTAC 1 cut(s) 268
CviAII CATG 2 cut(s) 241, 334
CviJI RGCY 6 cut(s) 83, 174, 332, 390, 398, 410
CviKI_1 RGCY 6 cut(s) 83, 174, 332, 390, 398, 410
CviQI GTAC 1 cut(s) 268
DpnI GATC 2 cut(s) 167, 245
DpnII GATC 2 cut(s) 165, 243
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco130I CCWWGG 2 cut(s) 333, 411
Eco147I AGGCCT 1 cut(s) 410
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 260
EcoT14I CCWWGG 2 cut(s) 333, 411
ErhI CCWWGG 2 cut(s) 333, 411
FaeI CATG 2 cut(s) 244, 337
FaiI YATR 4 cut(s) 147, 242, 305, 335
FalI AAGNNNNNCTT 3 cut(s) 28, 143, 175
FatI CATG 2 cut(s) 240, 333
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 1 cut(s) 143
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 143
FspBI CTAG 2 cut(s) 110, 472
GluI GCNGC 1 cut(s) 143
GsaI CCCAGC 1 cut(s) 142
HaeIII GGCC 1 cut(s) 410
Hin1I GRCGYC 1 cut(s) 468
Hin1II CATG 2 cut(s) 244, 337
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HinfI GANTC 1 cut(s) 353
HphI GGTGA 2 cut(s) 200, 455
Hpy166II GTNNAC 2 cut(s) 200, 258
Hpy188I TCNGA 3 cut(s) 208, 232, 466
Hpy8I GTNNAC 2 cut(s) 200, 258
HpyAV CCTTC 3 cut(s) 312, 400, 445
HpyCH4III ACNGT 2 cut(s) 204, 218
HpyCH4V TGCA 1 cut(s) 134
Hsp92I GRCGYC 1 cut(s) 468
Hsp92II CATG 2 cut(s) 244, 337
Kzo9I GATC 2 cut(s) 165, 243
LpnPI CCDG 7 cut(s) 9, 141, 152, 247, 274, 418, 445
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 143
MabI ACCWGGT 1 cut(s) 260
MaeI CTAG 2 cut(s) 110, 472
MaeIII GTNAC 3 cut(s) 58, 212, 350
MalI GATC 2 cut(s) 167, 245
MboI GATC 2 cut(s) 165, 243
MboII GAAGA 3 cut(s) 12, 28, 34
MlyI GAGTC 1 cut(s) 347
MnlI CCTC 3 cut(s) 56, 100, 356
MroXI GAANNNNTTC 1 cut(s) 455
MseI TTAA 1 cut(s) 420
MslI CAYNNNNRTG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 262
NcoI CCATGG 1 cut(s) 333
NdeII GATC 2 cut(s) 165, 243
NlaIII CATG 2 cut(s) 244, 337
NmuCI GTSAC 3 cut(s) 58, 212, 350
PceI AGGCCT 1 cut(s) 410
PdmI GAANNNNTTC 1 cut(s) 455
PkrI GCNGC 1 cut(s) 144
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 260
PspFI CCCAGC 1 cut(s) 138
PspGI CCWGG 1 cut(s) 260
PspPI GGNCC 1 cut(s) 200
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 245
SalI GTCGAC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 2 cut(s) 165, 243
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 1 cut(s) 262
SexAI ACCWGGT 1 cut(s) 260
SfaNI GCATC 1 cut(s) 143
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 245
SpeI ACTAGT 1 cut(s) 109
SseBI AGGCCT 1 cut(s) 410
SspMI CTAG 2 cut(s) 110, 472
StuI AGGCCT 1 cut(s) 410
StyD4I CCNGG 1 cut(s) 260
StyI CCWWGG 2 cut(s) 333, 411
TaaI ACNGT 2 cut(s) 204, 218
TaqI TCGA 1 cut(s) 257
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TseFI GTSAC 3 cut(s) 58, 212, 350
TseI GCWGC 1 cut(s) 142
Tsp45I GTSAC 3 cut(s) 58, 212, 350
TspDTI ATGAA 3 cut(s) 17, 28, 464
VpaK11BI GGWCC 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 455
XspI CTAG 2 cut(s) 110, 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.