FvH4_7g13930

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016390
Physical Location & Seq
Reverse (-)
12402974 .. 12403441
468 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13930.t1

Sequence Viewer

Length: 468 bp
ATGAAGTACCATTTTTGTTCTTCAGGTGCTTTTCTCTTCGTCTTCCTCATCCTTGTGACAATCTGTTTGAGTATTGAAGCTCAAACCTCCAATCCAAGTCGCAAAATAGTTATTAAAAAGTCTCCTCTGGTGTCCAAGCATACAAAAGCAACATTGACAATCAACAGCTTCGAGAAAGGTGGTGTTGGTGGCGGACCGTCTGAATGTGATGGTAAATACCACTCCGATAACACCATGATTGTGGCATTGTCGACCAGTTGGTACAATGGTGGGAAGAGGTGTTCAAACTACATTACCATAAATGGTAATGGAAGGAGTGTGAAAGCCAAGGTTGTCGATGAGTGTGACTCAACAAGAGGATGTGCTGATGACATTGTTGATGGCTCTAGAGCTGTTTGGAAGGCCTTGGGAGTTAAGGAAAGCAGCAGGGATTGGGGTGAAATGAAGGTATTCTGGTCTGACGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

16.87

Weight (kDa)

8.9

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 38 - 155 1e-32 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 251
AciI CCGC 1 cut(s) 192
AcuI CTGAAG 1 cut(s) 6
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 2 cut(s) 8, 263
AgsI TTSAA 2 cut(s) 77, 285
AloI GAACNNNNNNTCC 2 cut(s) 265, 297
AluBI AGCT 3 cut(s) 80, 168, 392
AluI AGCT 3 cut(s) 80, 168, 392
Alw26I GTCTC 1 cut(s) 126
AoxI GGCC 1 cut(s) 402
ApeKI GCWGC 1 cut(s) 423
ArsI GACNNNNNNTTYG 2 cut(s) 49, 81
Asp700I GAANNNNTTC 1 cut(s) 449
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 449
AvaII GGWCC 1 cut(s) 194
BaeI ACNNNNGTAYC 2 cut(s) 253, 286
BbsI GAAGAC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 435
BccI CCATC 2 cut(s) 203, 374
BcoDI GTCTC 1 cut(s) 126
BfaI CTAG 1 cut(s) 387
BisI GCNGC 1 cut(s) 424
BlsI GCNGC 1 cut(s) 425
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BpiI GAAGAC 1 cut(s) 34
BplI GAGNNNNNCTC 2 cut(s) 332, 364
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 2 cut(s) 327, 405
Bse1I ACTGG 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 327, 405
BseGI GGATG 2 cut(s) 48, 365
BseNI ACTGG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 435
BshFI GGCC 1 cut(s) 404
BsmAI GTCTC 1 cut(s) 126
BsnI GGCC 1 cut(s) 404
BspACI CCGC 1 cut(s) 192
BspANI GGCC 1 cut(s) 404
BsrI ACTGG 1 cut(s) 255
BssECI CCNNGG 2 cut(s) 327, 405
BssNI GRCGYC 1 cut(s) 462
BssT1I CCWWGG 2 cut(s) 327, 405
Bst4CI ACNGT 1 cut(s) 198
Bst6I CTCTTC 2 cut(s) 41, 269
BstACI GRCGYC 1 cut(s) 462
BstF5I GGATG 2 cut(s) 48, 365
BstMAI GTCTC 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 435
BstV2I GAAGAC 1 cut(s) 34
BstXI CCANNNNNNTGG 1 cut(s) 241
BsuRI GGCC 1 cut(s) 404
BtsCI GGATG 2 cut(s) 48, 365
Cfr13I GGNCC 1 cut(s) 194
CpoI CGGWCCG 1 cut(s) 194
Csp6I GTAC 2 cut(s) 7, 262
CspI CGGWCCG 1 cut(s) 194
CviAII CATG 1 cut(s) 235
CviJI RGCY 6 cut(s) 80, 168, 326, 384, 392, 404
CviKI_1 RGCY 6 cut(s) 80, 168, 326, 384, 392, 404
CviQI GTAC 2 cut(s) 7, 262
Eam1104I CTCTTC 2 cut(s) 41, 269
EarI CTCTTC 2 cut(s) 41, 269
EciI GGCGGA 1 cut(s) 207
Eco130I CCWWGG 2 cut(s) 327, 405
Eco147I AGGCCT 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 194
Eco57I CTGAAG 1 cut(s) 6
EcoT14I CCWWGG 2 cut(s) 327, 405
ErhI CCWWGG 2 cut(s) 327, 405
FaeI CATG 1 cut(s) 238
FaiI YATR 3 cut(s) 141, 236, 299
FatI CATG 1 cut(s) 234
FblI GTMKAC 1 cut(s) 251
Fnu4HI GCNGC 1 cut(s) 424
FokI GGATG 2 cut(s) 35, 372
Fsp4HI GCNGC 1 cut(s) 424
FspBI CTAG 1 cut(s) 387
GluI GCNGC 1 cut(s) 424
HaeIII GGCC 1 cut(s) 404
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 1 cut(s) 238
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 1 cut(s) 347
HphI GGTGA 1 cut(s) 449
Hpy166II GTNNAC 1 cut(s) 252
Hpy188I TCNGA 3 cut(s) 202, 226, 460
Hpy188III TCNNGA 2 cut(s) 172, 387
Hpy8I GTNNAC 1 cut(s) 252
HpyAV CCTTC 3 cut(s) 306, 394, 439
HpyCH4III ACNGT 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 1 cut(s) 238
LpnPI CCDG 5 cut(s) 9, 113, 268, 412, 439
Lsp1109I GCAGC 1 cut(s) 435
MaeI CTAG 1 cut(s) 387
MaeIII GTNAC 2 cut(s) 55, 344
MboII GAAGA 4 cut(s) 12, 28, 34, 286
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 5 cut(s) 56, 97, 135, 270, 350
MroXI GAANNNNTTC 1 cut(s) 449
MseI TTAA 2 cut(s) 114, 414
MslI CAYNNNNRTG 2 cut(s) 53, 239
NlaIII CATG 1 cut(s) 238
NmuCI GTSAC 2 cut(s) 55, 344
PceI AGGCCT 1 cut(s) 404
PdmI GAANNNNTTC 1 cut(s) 449
PkrI GCNGC 1 cut(s) 425
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
PspPI GGNCC 1 cut(s) 194
RsaI GTAC 2 cut(s) 8, 263
RsaNI GTAC 2 cut(s) 7, 262
RseI CAYNNNNRTG 2 cut(s) 53, 239
Rsr2I CGGWCCG 1 cut(s) 194
RsrII CGGWCCG 1 cut(s) 194
SalI GTCGAC 1 cut(s) 250
SaqAI TTAA 2 cut(s) 114, 414
SatI GCNGC 1 cut(s) 424
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 1 cut(s) 341
SetI ASST 9 cut(s) 28, 82, 89, 170, 181, 281, 333, 394, 450
SinI GGWCC 1 cut(s) 194
SmiMI CAYNNNNRTG 2 cut(s) 53, 239
SseBI AGGCCT 1 cut(s) 404
SsiI CCGC 1 cut(s) 192
SspMI CTAG 1 cut(s) 387
StuI AGGCCT 1 cut(s) 404
StyI CCWWGG 2 cut(s) 327, 405
TaaI ACNGT 1 cut(s) 198
TaqI TCGA 3 cut(s) 171, 251, 336
Tru1I TTAA 2 cut(s) 114, 414
Tru9I TTAA 2 cut(s) 114, 414
TseFI GTSAC 2 cut(s) 55, 344
TseI GCWGC 1 cut(s) 423
Tsp45I GTSAC 2 cut(s) 55, 344
TspDTI ATGAA 2 cut(s) 17, 458
VpaK11BI GGWCC 1 cut(s) 194
XbaI TCTAGA 1 cut(s) 386
XmiI GTMKAC 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 449
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.