Rmu_sc0005914.1_g000014

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005914.1
OG0016390
Physical Location & Seq
Reverse (-)
59513 .. 59860
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005914.1_g000014.1.cds

Sequence Viewer

Length: 348 bp
atgcctccgatgtccgcgcatacaaaagcaaccttgacgatcaacagcttcgagaaaggtggtgggggcggtggaccgtccgaatgtgacggtaaatatcactccgataacaccctgatcgtggcattgtccaccaggtggtataacaatgggaagaggtgttcaaactacattaccatatatggtaaaggaaagagcgtgaaagccaaggttgttgatgaatgtgactcaacaagaggatgtgatgatgacatcgttgatgcctctaaagctgtttggaaggccttgggagttaaggaaagcagcagcgactggggtgaaatgaaaatattctggtctgatgcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.43

Weight (kDa)

6.71

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 138
AccII CGCG 1 cut(s) 17
AciI CCGC 2 cut(s) 15, 69
AdeI CACNNNGTG 1 cut(s) 138
AfiI CCNNNNNNNGG 2 cut(s) 121, 138
AgsI TTSAA 1 cut(s) 165
AjnI CCWGG 1 cut(s) 134
AloI GAACNNNNNNTCC 2 cut(s) 145, 177
AluBI AGCT 2 cut(s) 48, 272
AluI AGCT 2 cut(s) 48, 272
AlwNI CAGNNNCTG 1 cut(s) 312
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 2 cut(s) 303, 306
Asp700I GAANNNNTTC 1 cut(s) 329
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 329
AvaII GGWCC 1 cut(s) 74
BbvI GCAGC 2 cut(s) 315, 318
BciT130I CCWGG 1 cut(s) 136
BisI GCNGC 2 cut(s) 304, 307
BlsI GCNGC 2 cut(s) 305, 308
Bme1390I CCNGG 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 136
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 2 cut(s) 250, 331
BmuI ACTGGG 1 cut(s) 322
BsaJI CCNNGG 2 cut(s) 207, 285
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 138
Bse1I ACTGG 1 cut(s) 317
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 2 cut(s) 207, 285
BseGI GGATG 1 cut(s) 245
BseLI CCNNNNNNNGG 2 cut(s) 121, 138
BseNI ACTGG 1 cut(s) 317
BseXI GCAGC 2 cut(s) 315, 318
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 1 cut(s) 284
BslI CCNNNNNNNGG 2 cut(s) 121, 138
BsnI GGCC 1 cut(s) 284
Bsp143I GATC 2 cut(s) 39, 117
BspACI CCGC 2 cut(s) 15, 69
BspANI GGCC 1 cut(s) 284
BspFNI CGCG 1 cut(s) 17
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 2 cut(s) 207, 285
BssMI GATC 2 cut(s) 39, 117
BssT1I CCWWGG 2 cut(s) 207, 285
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 78, 92
Bst6I CTCTTC 1 cut(s) 149
BstF5I GGATG 1 cut(s) 245
BstFNI CGCG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 2 cut(s) 42, 120
BstMBI GATC 2 cut(s) 39, 117
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 134
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 315, 318
BsuRI GGCC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 245
CaiI CAGNNNCTG 1 cut(s) 312
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 74
CsiI ACCWGGT 1 cut(s) 134
CviJI RGCY 4 cut(s) 48, 206, 272, 284
CviKI_1 RGCY 4 cut(s) 48, 206, 272, 284
DpnI GATC 2 cut(s) 41, 119
DpnII GATC 2 cut(s) 39, 117
DraIII CACNNNGTG 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco130I CCWWGG 2 cut(s) 207, 285
Eco147I AGGCCT 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 134
EcoT14I CCWWGG 2 cut(s) 207, 285
ErhI CCWWGG 2 cut(s) 207, 285
FaiI YATR 5 cut(s) 21, 144, 179, 181, 183
Fnu4HI GCNGC 2 cut(s) 304, 307
FokI GGATG 1 cut(s) 252
Fsp4HI GCNGC 2 cut(s) 304, 307
GlaI GCGC 1 cut(s) 18
GluI GCNGC 2 cut(s) 304, 307
HaeIII GGCC 1 cut(s) 284
HhaI GCGC 1 cut(s) 19
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 1 cut(s) 227
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 2 cut(s) 74, 132
Hpy188I TCNGA 4 cut(s) 9, 82, 106, 340
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 2 cut(s) 74, 132
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 2 cut(s) 78, 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HspAI GCGC 1 cut(s) 17
Kzo9I GATC 2 cut(s) 39, 117
LpnPI CCDG 5 cut(s) 121, 128, 148, 298, 319
Lsp1109I GCAGC 2 cut(s) 315, 318
LweI GCATC 2 cut(s) 250, 331
MabI ACCWGGT 1 cut(s) 134
MaeIII GTNAC 2 cut(s) 86, 224
MalI GATC 2 cut(s) 41, 119
MboI GATC 2 cut(s) 39, 117
MboII GAAGA 1 cut(s) 166
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 4 cut(s) 15, 150, 230, 274
MroXI GAANNNNTTC 1 cut(s) 329
MseI TTAA 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 136
MvaI CCWGG 1 cut(s) 136
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 2 cut(s) 39, 117
NmuCI GTSAC 2 cut(s) 86, 224
PceI AGGCCT 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 329
PflMI CCANNNNNTGG 1 cut(s) 138
PkrI GCNGC 2 cut(s) 305, 308
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspPI GGNCC 1 cut(s) 74
PstNI CAGNNNCTG 1 cut(s) 312
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 2 cut(s) 304, 307
Sau3AI GATC 2 cut(s) 39, 117
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 136
SetI ASST 7 cut(s) 35, 50, 61, 140, 161, 213, 274
SexAI ACCWGGT 1 cut(s) 134
SfaNI GCATC 2 cut(s) 250, 331
SinI GGWCC 1 cut(s) 74
SseBI AGGCCT 1 cut(s) 284
SsiI CCGC 2 cut(s) 15, 69
SspI AATATT 1 cut(s) 330
StuI AGGCCT 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 134
StyI CCWWGG 2 cut(s) 207, 285
TaaI ACNGT 2 cut(s) 78, 92
TaqI TCGA 1 cut(s) 51
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TseFI GTSAC 2 cut(s) 86, 224
TseI GCWGC 2 cut(s) 303, 306
Tsp45I GTSAC 2 cut(s) 86, 224
TspDTI ATGAA 2 cut(s) 234, 338
Van91I CCANNNNNTGG 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.