Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005122.1

Orthogroup ID

OG0016390

Physical Location & Seq

Genomic Coordinates Reverse (-)

54278 .. 54742

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005122.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgaagtaccacttctgttcttcaggtgcttttctcttcatcttcatcattcttgtgacaatctgtttgtgcattgaagctcgaacctacaatccaagtggcaaaatagtcggtaaaaagcctccggtgtccgagcgtacaaaagcaaccttgacgatcaacagcttcgaggaaggtggtgggggtggtggaccgtccgaatgtgacggtaaataccactccaataacaccccgatcgtggcattgtccaccaggttgtataacaatgggaagaggtgttcaaactacattaccatatatggtcatggaaagagcgtgaaagccaaggttgttgatgaatgtgactcaacaagaggatgtgatgatgacatcgttgatgcctctaaagctgtttggaaggccttgggagttaaggaaagcagcagcgactggggtgagatgaaaatattctggtctgatgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.76

Weight (kDa)

8.13

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016390)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13920 FvH4_7g13930
rosa_chinensis	RchiOBHm_Chr1g0353521 RchiOBHm_Chr1g0358341
rosa_laevigata	RLG00000028243
rosa_multiflora	Rmu_sc0000687.1_g000017 Rmu_sc0005122.1_g000011 Rmu_sc0005914.1_g000014
rosa_rugosa	Rorug01G0236100 Rorug01G0241900
rosa_samantha	Rh1AG248200 Rh1AG274800 Rh1DG244500 Rh1DG270700
rosa_wichuraiana	Rw1G021630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	6
AfaI	GTAC	2 cut(s)	8, 139
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	2 cut(s)	77, 282
AjnI	CCWGG	1 cut(s)	251
AloI	GAACNNNNNNTCC	4 cut(s)	76, 108, 262, 294
AluBI	AGCT	3 cut(s)	80, 165, 389
AluI	AGCT	3 cut(s)	80, 165, 389
AlwNI	CAGNNNCTG	1 cut(s)	429
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	2 cut(s)	420, 423
ArsI	GACNNNNNNTTYG	2 cut(s)	49, 81
Asp700I	GAANNNNTTC	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	432, 435
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BciT130I	CCWGG	1 cut(s)	253
BisI	GCNGC	2 cut(s)	421, 424
BlsI	GCNGC	2 cut(s)	422, 425
Bme1390I	CCNGG	1 cut(s)	253
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	253
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	2 cut(s)	367, 448
BmuI	ACTGGG	1 cut(s)	439
BsaJI	CCNNGG	2 cut(s)	324, 402
BsaWI	WCCGGW	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	434
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	2 cut(s)	324, 402
BseGI	GGATG	1 cut(s)	362
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	434
BseXI	GCAGC	2 cut(s)	432, 435
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	401
BsiEI	CGRYCG	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	238
BsnI	GGCC	1 cut(s)	401
Bsp143I	GATC	2 cut(s)	156, 234
BspANI	GGCC	1 cut(s)	401
BsrI	ACTGG	1 cut(s)	434
BssECI	CCNNGG	2 cut(s)	324, 402
BssMI	GATC	2 cut(s)	156, 234
BssT1I	CCWWGG	2 cut(s)	324, 402
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	2 cut(s)	195, 209
Bst6I	CTCTTC	2 cut(s)	41, 266
BstF5I	GGATG	1 cut(s)	362
BstKTI	GATC	2 cut(s)	159, 237
BstMBI	GATC	2 cut(s)	156, 234
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	251
BstV1I	GCAGC	2 cut(s)	432, 435
BsuRI	GGCC	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	362
CaiI	CAGNNNCTG	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	191
CsiI	ACCWGGT	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	7, 138
CspCI	CAANNNNNGTGG	2 cut(s)	79, 114
CviAII	CATG	1 cut(s)	305
CviJI	RGCY	6 cut(s)	80, 121, 165, 323, 389, 401
CviKI_1	RGCY	6 cut(s)	80, 121, 165, 323, 389, 401
CviQI	GTAC	2 cut(s)	7, 138
DpnI	GATC	2 cut(s)	158, 236
DpnII	GATC	2 cut(s)	156, 234
Eam1104I	CTCTTC	2 cut(s)	41, 266
EarI	CTCTTC	2 cut(s)	41, 266
Eco130I	CCWWGG	2 cut(s)	324, 402
Eco147I	AGGCCT	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	251
EcoT14I	CCWWGG	2 cut(s)	324, 402
ErhI	CCWWGG	2 cut(s)	324, 402
FaeI	CATG	1 cut(s)	308
FaiI	YATR	5 cut(s)	261, 296, 298, 300, 306
FalI	AAGNNNNNCTT	1 cut(s)	28
FatI	CATG	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	421, 424
FokI	GGATG	1 cut(s)	369
Fsp4HI	GCNGC	2 cut(s)	421, 424
GluI	GCNGC	2 cut(s)	421, 424
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	1 cut(s)	125
Hin1II	CATG	1 cut(s)	308
HinfI	GANTC	1 cut(s)	344
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	2 cut(s)	191, 249
Hpy188I	TCNGA	3 cut(s)	133, 199, 457
Hpy8I	GTNNAC	2 cut(s)	191, 249
HpyAV	CCTTC	2 cut(s)	167, 391
HpyCH4III	ACNGT	2 cut(s)	195, 209
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
Hsp92II	CATG	1 cut(s)	308
Kzo9I	GATC	2 cut(s)	156, 234
LpnPI	CCDG	6 cut(s)	9, 138, 238, 265, 415, 436
Lsp1109I	GCAGC	2 cut(s)	432, 435
LweI	GCATC	2 cut(s)	367, 448
MabI	ACCWGGT	1 cut(s)	251
MaeIII	GTNAC	3 cut(s)	55, 203, 341
MalI	GATC	2 cut(s)	158, 236
MboI	GATC	2 cut(s)	156, 234
MboII	GAAGA	4 cut(s)	12, 28, 34, 283
MlyI	GAGTC	1 cut(s)	338
MnlI	CCTC	5 cut(s)	132, 163, 267, 347, 391
MroXI	GAANNNNTTC	1 cut(s)	446
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	53
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	386
NdeII	GATC	2 cut(s)	156, 234
NlaIII	CATG	1 cut(s)	308
NmuCI	GTSAC	3 cut(s)	55, 203, 341
PceI	AGGCCT	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	446
PkrI	GCNGC	2 cut(s)	422, 425
Ple19I	CGATCG	1 cut(s)	237
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	191
PstNI	CAGNNNCTG	1 cut(s)	429
PvuI	CGATCG	1 cut(s)	237
RsaI	GTAC	2 cut(s)	8, 139
RsaNI	GTAC	2 cut(s)	7, 138
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	421, 424
Sau3AI	GATC	2 cut(s)	156, 234
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	253
SexAI	ACCWGGT	1 cut(s)	251
SfaNI	GCATC	2 cut(s)	367, 448
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	53
SseBI	AGGCCT	1 cut(s)	401
SspI	AATATT	1 cut(s)	447
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	251
StyI	CCWWGG	2 cut(s)	324, 402
TaaI	ACNGT	2 cut(s)	195, 209
TaqI	TCGA	2 cut(s)	82, 168
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseFI	GTSAC	3 cut(s)	55, 203, 341
TseI	GCWGC	2 cut(s)	420, 423
Tsp45I	GTSAC	3 cut(s)	55, 203, 341
TspDTI	ATGAA	5 cut(s)	17, 28, 34, 351, 455
VpaK11BI	GGWCC	1 cut(s)	191
XmnI	GAANNNNTTC	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.