Rorug01G0241900

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003987
Physical Location & Seq
Forward (+)
34688642 .. 34692109
3468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0241900.1

Sequence Viewer

Length: 666 bp
ATGGCGACTGCAATTACAGCGCCTACCTATCCAAGAAATGTTAAGCTTTTATCTTCTAAGTGTGTTGGTTCCAGAGTTATAGCGCTGGGTCTTTGCGCAATGTCTTACAAACCTACTAGTACTTTTGGGCACAAGCTCAATTCTCGCTGCTGTTTCTTCTGTATGCCTGAACCTCTTCTAGTCAACAATTTCAAGAGGATTTCATGGTCTGTCAGAAGCAGTGTAGATAACAGTGGGTTAGACCCATCTCCAACAAATGGCACTACAGGCACAACCAGATTAATTAGGGTTATCCAAGCTATTCAATCCAAGTTAGGTGCCAGAATTGGAGAGATAAGGAGAGGTTTACCCGTGAAAATACTTTTCTTCCTAGTCGGTTTCTATTGTTCAACTGCTTATGCTACTGTTATTGGGCAAACGGGAGACTGGGACATTCTCTCTGCGGCCTTGGCTGTGCTTATTGTGGAGGGGATTGGGGCCCTCATGTACAAGGCTTCTCTTCCTTTATTGAAGAAGACTAAAAGCCTGATAACCAAGTTTAATTATTGGAAAGCTGGGCTTGCGATGGGTCTTTTCTTGGATTCGTTTAAATATGAAGTCAATGACATTTTCGGATTCAGTAACCCCTTCAGTTTTGTACTAGATGCATTTTCATTATTCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.21

Weight (kDa)

9.7

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF565 PF04483 139 - 197 5.4e-16 Protein of unknown function (DUF565)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 317
AccB7I CCANNNNNTGG 1 cut(s) 257
AciI CCGC 1 cut(s) 443
AcuI CTGAAG 1 cut(s) 613
AfaI GTAC 3 cut(s) 121, 488, 639
AfeI AGCGCT 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 4 cut(s) 193, 305, 390, 511
AhlI ACTAGT 1 cut(s) 116
AluBI AGCT 4 cut(s) 46, 136, 299, 554
AluI AGCT 4 cut(s) 46, 136, 299, 554
Alw26I GTCTC 1 cut(s) 417
Aor51HI AGCGCT 1 cut(s) 84
AoxI GGCC 2 cut(s) 444, 477
ApaI GGGCCC 1 cut(s) 481
ApeKI GCWGC 1 cut(s) 147
AseI ATTAAT 1 cut(s) 281
Asp700I GAANNNNTTC 1 cut(s) 174
AspLEI GCGC 3 cut(s) 22, 85, 98
AspS9I GGNCC 2 cut(s) 477, 478
BaeGI GKGCMC 2 cut(s) 132, 481
BanI GGYRCC 1 cut(s) 317
BanII GRGCYC 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 521
BbvI GCAGC 1 cut(s) 134
BccI CCATC 2 cut(s) 253, 559
BcoDI GTCTC 1 cut(s) 417
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 4 cut(s) 117, 179, 371, 641
BfmI CTRYAG 1 cut(s) 264
BfoI RGCGCY 2 cut(s) 23, 86
BisI GCNGC 2 cut(s) 148, 444
BlsI GCNGC 2 cut(s) 149, 445
BmcAI AGTACT 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 477, 478
BmiI GGNNCC 4 cut(s) 70, 319, 478, 479
BmrI ACTGGG 1 cut(s) 436
BmsI GCATC 1 cut(s) 634
BmuI ACTGGG 1 cut(s) 436
BpiI GAAGAC 1 cut(s) 521
BsaJI CCNNGG 1 cut(s) 447
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 431
Bse3DI GCAATG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 447
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMI GCAATG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 431
BseSI GKGCMC 2 cut(s) 132, 481
BseXI GCAGC 1 cut(s) 134
BseYI CCCAGC 2 cut(s) 85, 554
BshFI GGCC 2 cut(s) 446, 479
BshNI GGYRCC 1 cut(s) 317
BslFI GGGAC 1 cut(s) 443
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 417
BsmFI GGGAC 1 cut(s) 443
BsnI GGCC 2 cut(s) 446, 479
Bsp120I GGGCCC 1 cut(s) 477
Bsp1286I GDGCHC 2 cut(s) 132, 481
Bsp1407I TGTACA 1 cut(s) 486
BspACI CCGC 1 cut(s) 443
BspANI GGCC 2 cut(s) 446, 479
BspLI GGNNCC 4 cut(s) 70, 319, 478, 479
BspT107I GGYRCC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 105
BsrGI TGTACA 1 cut(s) 486
BsrI ACTGG 1 cut(s) 431
BssECI CCNNGG 1 cut(s) 447
BssT1I CCWWGG 1 cut(s) 447
Bst4CI ACNGT 2 cut(s) 233, 406
Bst6I CTCTTC 2 cut(s) 180, 504
BstAUI TGTACA 1 cut(s) 486
BstC8I GCNNGC 1 cut(s) 561
BstDEI CTNAG 1 cut(s) 57
BstH2I RGCGCY 2 cut(s) 23, 86
BstHHI GCGC 3 cut(s) 22, 85, 98
BstMAI GTCTC 1 cut(s) 417
BstMWI GCNNNNNNNGC 4 cut(s) 17, 267, 449, 560
BstSFI CTRYAG 1 cut(s) 264
BstSLI GKGCMC 2 cut(s) 132, 481
BstV1I GCAGC 1 cut(s) 134
BstV2I GAAGAC 1 cut(s) 521
BsuRI GGCC 2 cut(s) 446, 479
BtgZI GCGATG 1 cut(s) 578
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 226, 238
Cac8I GCNNGC 1 cut(s) 561
CfoI GCGC 3 cut(s) 22, 85, 98
Cfr13I GGNCC 2 cut(s) 477, 478
Csp6I GTAC 3 cut(s) 120, 487, 638
CviAII CATG 2 cut(s) 204, 484
CviQI GTAC 3 cut(s) 120, 487, 638
DdeI CTNAG 1 cut(s) 57
DraI TTTAAA 1 cut(s) 589
Eam1104I CTCTTC 2 cut(s) 180, 504
EarI CTCTTC 2 cut(s) 180, 504
Eco130I CCWWGG 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 481
Eco47III AGCGCT 1 cut(s) 84
Eco57I CTGAAG 1 cut(s) 613
EcoO109I RGGNCCY 2 cut(s) 477, 478
EcoT14I CCWWGG 1 cut(s) 447
EcoT22I ATGCAT 1 cut(s) 649
EcoT38I GRGCYC 1 cut(s) 481
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 2 cut(s) 207, 487
FaiI YATR 6 cut(s) 80, 164, 205, 399, 485, 594
FalI AAGNNNNNCTT 2 cut(s) 543, 575
FaqI GGGAC 1 cut(s) 443
FatI CATG 2 cut(s) 203, 483
Fnu4HI GCNGC 2 cut(s) 148, 444
FriOI GRGCYC 1 cut(s) 481
Fsp4HI GCNGC 2 cut(s) 148, 444
FspBI CTAG 4 cut(s) 117, 179, 371, 641
FspI TGCGCA 1 cut(s) 97
GlaI GCGC 3 cut(s) 21, 84, 97
GluI GCNGC 2 cut(s) 148, 444
GsaI CCCAGC 2 cut(s) 89, 558
HaeII RGCGCY 2 cut(s) 23, 86
HaeIII GGCC 2 cut(s) 446, 479
HhaI GCGC 3 cut(s) 22, 85, 98
Hin1II CATG 2 cut(s) 207, 487
Hin6I GCGC 3 cut(s) 20, 83, 96
HinP1I GCGC 3 cut(s) 20, 83, 96
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 2 cut(s) 581, 615
Hpy166II GTNNAC 2 cut(s) 184, 347
Hpy188I TCNGA 2 cut(s) 215, 614
Hpy188III TCNNGA 2 cut(s) 72, 193
Hpy8I GTNNAC 2 cut(s) 184, 347
HpyAV CCTTC 1 cut(s) 637
HpyCH4III ACNGT 2 cut(s) 233, 406
HpyCH4V TGCA 2 cut(s) 11, 647
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 267, 449, 560
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 2 cut(s) 207, 487
HspAI GCGC 3 cut(s) 20, 83, 96
LpnPI CCDG 9 cut(s) 71, 85, 180, 252, 289, 334, 412, 539, 540
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 1 cut(s) 634
MaeI CTAG 4 cut(s) 117, 179, 371, 641
MaeIII GTNAC 1 cut(s) 620
MboII GAAGA 7 cut(s) 45, 148, 167, 358, 491, 523, 526
MhlI GDGCHC 2 cut(s) 132, 481
MluCI AATT 6 cut(s) 12, 139, 187, 282, 324, 541
MmeI TCCRAC 1 cut(s) 275
MnlI CCTC 5 cut(s) 183, 189, 335, 460, 491
Mph1103I ATGCAT 1 cut(s) 649
MroXI GAANNNNTTC 1 cut(s) 174
MseI TTAA 5 cut(s) 42, 281, 540, 588, 664
MwoI GCNNNNNNNGC 4 cut(s) 17, 267, 449, 560
NlaIII CATG 2 cut(s) 207, 487
NlaIV GGNNCC 4 cut(s) 70, 319, 478, 479
NsbI TGCGCA 1 cut(s) 97
NsiI ATGCAT 1 cut(s) 649
PdmI GAANNNNTTC 1 cut(s) 174
PfeI GAWTC 2 cut(s) 581, 615
PflMI CCANNNNNTGG 1 cut(s) 257
PkrI GCNGC 2 cut(s) 149, 445
PshBI ATTAAT 1 cut(s) 281
PspFI CCCAGC 2 cut(s) 85, 554
PspN4I GGNNCC 4 cut(s) 70, 319, 478, 479
PspOMI GGGCCC 1 cut(s) 477
PspPI GGNCC 2 cut(s) 477, 478
RsaI GTAC 3 cut(s) 121, 488, 639
RsaNI GTAC 3 cut(s) 120, 487, 638
SaqAI TTAA 5 cut(s) 42, 281, 540, 588, 664
SatI GCNGC 2 cut(s) 148, 444
Sau96I GGNCC 2 cut(s) 477, 478
ScaI AGTACT 1 cut(s) 121
SduI GDGCHC 2 cut(s) 132, 481
SetI ASST 9 cut(s) 29, 48, 115, 138, 175, 301, 319, 346, 556
SfaNI GCATC 1 cut(s) 634
SfcI CTRYAG 1 cut(s) 264
SpeI ACTAGT 1 cut(s) 116
Sse9I AATT 6 cut(s) 12, 139, 187, 282, 324, 541
SsiI CCGC 1 cut(s) 443
SspMI CTAG 4 cut(s) 117, 179, 371, 641
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 2 cut(s) 233, 406
TasI AATT 6 cut(s) 12, 139, 187, 282, 324, 541
TatI WGTACW 3 cut(s) 119, 486, 637
TauI GCSGC 1 cut(s) 446
TfiI GAWTC 2 cut(s) 581, 615
Tru1I TTAA 5 cut(s) 42, 281, 540, 588, 664
Tru9I TTAA 5 cut(s) 42, 281, 540, 588, 664
TscAI CASTG 2 cut(s) 226, 238
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 3 cut(s) 192, 609, 642
TspRI CASTG 2 cut(s) 226, 238
Van91I CCANNNNNTGG 1 cut(s) 257
VspI ATTAAT 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 174
XspI CTAG 4 cut(s) 117, 179, 371, 641
ZrmI AGTACT 1 cut(s) 121
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.