Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003987

Physical Location & Seq

Genomic Coordinates Forward (+)

29480409 .. 29480828

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0275300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCCTCAACGTCTATTGGTGGGGCTGAGGTTCCTTTTGAAGATGAAGGAATTATCGAAGCCATGTCAGTACAGTTTGAGAATACTGCTGATTTTATTGACCTGGAGTATGGAATAAACCTACTGGGCTTCCTGATTGCTGATGAAGAACCAGGGCAGAATGGTTTCAAGGCTGTTCTCTTGAGTCTCTGGAAAGCTCTTGGCCAGATCAGAATCATCCGAGTCAAGAAGAACGTCTACTCCATTACGGTGGGTTCGGAGAAACTGGCGGCAAAGCTGATTGATGATAGTCCCTGGAATGTGAAGGCGTACTGCTTCTCAGTGAGACACTGGCCTCACTTCCACTCCATTGAGGAGCTTGAACCACATAGAGCCACCTACTGGATTCAAGCACATGGAATCCCTATCGACCAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.63

Weight (kDa)

4.99

Isoelectric Point (pI)

28.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03810 AT4G28440
malus_domestica	MD09G1242500.v1.1
prunus_persica	Prupe.3G134500_v2.0.a1
pyrus_communis	pycom09g16100
rosa_chinensis	RchiOBHm_Chr2g0127301 RchiOBHm_Chr2g0127851
rosa_multiflora	Rmu_sc0001725.1_g000028 Rmu_sc0007523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116320 Rroxscaffold_6G00409990
rosa_rugosa	Rorug01G0241900 Rorug02G0275300
rosa_samantha	Rh2AG176100 Rh2AG326400 Rh2BG335900 Rh2BG411700 Rh2CG196400 Rh2CG314100 Rh2DG353600 Rh3CG304000 Rh4AG061400 Rh4BG059900 Rh4CG065600 Rh5AG420800 Rh5BG346800 Rh5BG492700 Rh5CG516700 Rh6CG032800 Rh6DG030600
rosa_wichuraiana	Rw0G005980 Rw1G039040 Rw2G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	381
AccI	GTMKAC	1 cut(s)	237
AciI	CCGC	1 cut(s)	269
AcoI	YGGCCR	1 cut(s)	202
AfaI	GTAC	2 cut(s)	72, 311
AfiI	CCNNNNNNNGG	1 cut(s)	381
AgsI	TTSAA	4 cut(s)	41, 169, 362, 389
AjnI	CCWGG	3 cut(s)	102, 151, 293
AloI	GAACNNNNNNTCC	2 cut(s)	224, 256
AluBI	AGCT	4 cut(s)	197, 277, 358, 415
AluI	AGCT	4 cut(s)	197, 277, 358, 415
Alw26I	GTCTC	2 cut(s)	191, 319
AoxI	GGCC	3 cut(s)	3, 202, 332
Asp700I	GAANNNNTTC	1 cut(s)	164
BalI	TGGCCA	1 cut(s)	204
BarI	GAAGNNNNNNTAC	2 cut(s)	221, 253
BbvCI	CCTCAGC	1 cut(s)	27
BciT130I	CCWGG	3 cut(s)	104, 153, 295
BcoDI	GTCTC	2 cut(s)	191, 319
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	3 cut(s)	104, 153, 295
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	3 cut(s)	104, 153, 295
BmrI	ACTGGG	1 cut(s)	134
BmuI	ACTGGG	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	202
BsaBI	GATNNNNATC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	152, 293
BsaXI	ACNNNNNCTCC	4 cut(s)	224, 254, 329, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse1I	ACTGG	4 cut(s)	129, 270, 335, 386
Bse8I	GATNNNNATC	1 cut(s)	212
BseBI	CCWGG	3 cut(s)	104, 153, 295
BseDI	CCNNGG	2 cut(s)	152, 293
BseGI	GGATG	1 cut(s)	216
BseJI	GATNNNNATC	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	18, 333
BseNI	ACTGG	4 cut(s)	129, 270, 335, 386
BseRI	GAGGAG	1 cut(s)	368
BshFI	GGCC	3 cut(s)	5, 204, 334
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	2 cut(s)	191, 319
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	3 cut(s)	5, 204, 334
Bsp143I	GATC	1 cut(s)	207
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	3 cut(s)	5, 204, 334
BspCNI	CTCAG	2 cut(s)	19, 332
BspLI	GGNNCC	1 cut(s)	33
BsrI	ACTGG	4 cut(s)	129, 270, 335, 386
BssECI	CCNNGG	2 cut(s)	152, 293
BssMI	GATC	1 cut(s)	207
Bst2UI	CCWGG	3 cut(s)	104, 153, 295
Bst4CI	ACNGT	2 cut(s)	75, 250
BstDEI	CTNAG	2 cut(s)	27, 319
BstF5I	GGATG	1 cut(s)	216
BstKTI	GATC	1 cut(s)	210
BstMAI	GTCTC	2 cut(s)	191, 319
BstMBI	GATC	1 cut(s)	207
BstNI	CCWGG	3 cut(s)	104, 153, 295
BstSCI	CCNGG	3 cut(s)	102, 151, 293
BstXI	CCANNNNNNTGG	1 cut(s)	250
BsuRI	GGCC	3 cut(s)	5, 204, 334
BtsCI	GGATG	1 cut(s)	216
BtsIMutI	CAGTG	2 cut(s)	327, 328
Csp6I	GTAC	2 cut(s)	71, 310
CviAII	CATG	2 cut(s)	64, 395
CviQI	GTAC	2 cut(s)	71, 310
DdeI	CTNAG	2 cut(s)	27, 319
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
EaeI	YGGCCR	1 cut(s)	202
EcoRII	CCWGG	3 cut(s)	102, 151, 293
FaeI	CATG	2 cut(s)	67, 398
FaiI	YATR	4 cut(s)	65, 111, 369, 396
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	2 cut(s)	63, 394
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	3 cut(s)	5, 204, 334
Hin1II	CATG	2 cut(s)	67, 398
HinfI	GANTC	5 cut(s)	184, 213, 222, 385, 399
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	3 cut(s)	212, 221, 259
Hpy188III	TCNNGA	4 cut(s)	133, 181, 190, 226
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	2 cut(s)	41, 298
HpyCH4III	ACNGT	2 cut(s)	75, 250
HpyCH4IV	ACGT	2 cut(s)	11, 234
HpyF3I	CTNAG	2 cut(s)	27, 319
HpySE526I	ACGT	2 cut(s)	11, 234
Hsp92II	CATG	2 cut(s)	67, 398
Kzo9I	GATC	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	355
MaeII	ACGT	2 cut(s)	11, 234
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MboII	GAAGA	3 cut(s)	53, 158, 241
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	1 cut(s)	51
MluNI	TGGCCA	1 cut(s)	204
MlyI	GAGTC	2 cut(s)	193, 231
MnlI	CCTC	4 cut(s)	16, 22, 345, 346
Mox20I	TGGCCA	1 cut(s)	204
MroXI	GAANNNNTTC	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	248
Msp20I	TGGCCA	1 cut(s)	204
MspR9I	CCNGG	3 cut(s)	104, 153, 295
MvaI	CCWGG	3 cut(s)	104, 153, 295
NdeII	GATC	1 cut(s)	207
NlaIII	CATG	2 cut(s)	67, 398
NlaIV	GGNNCC	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	3 cut(s)	213, 385, 399
PflMI	CCANNNNNTGG	1 cut(s)	381
PkrI	GCNGC	1 cut(s)	271
PleI	GAGTC	2 cut(s)	192, 230
PpsI	GAGTC	2 cut(s)	192, 230
Psp6I	CCWGG	3 cut(s)	102, 151, 293
PspGI	CCWGG	3 cut(s)	102, 151, 293
PspN4I	GGNNCC	1 cut(s)	33
RsaI	GTAC	2 cut(s)	72, 311
RsaNI	GTAC	2 cut(s)	71, 310
RseI	CAYNNNNRTG	1 cut(s)	248
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	1 cut(s)	207
SchI	GAGTC	2 cut(s)	193, 231
ScrFI	CCNGG	3 cut(s)	104, 153, 295
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	1 cut(s)	51
SsiI	CCGC	1 cut(s)	269
StyD4I	CCNGG	3 cut(s)	102, 151, 293
TaaI	ACNGT	2 cut(s)	75, 250
TaiI	ACGT	2 cut(s)	14, 237
TaqI	TCGA	2 cut(s)	57, 408
TasI	AATT	1 cut(s)	51
TatI	WGTACW	1 cut(s)	70
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	3 cut(s)	213, 385, 399
TscAI	CASTG	2 cut(s)	327, 335
TspDTI	ATGAA	2 cut(s)	60, 159
TspRI	CASTG	2 cut(s)	327, 335
Van91I	CCANNNNNTGG	1 cut(s)	381
XmiI	GTMKAC	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.