Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007523.1

Orthogroup ID

OG0003987

Physical Location & Seq

Genomic Coordinates Forward (+)

15107 .. 16001

Gene Structure 895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007523.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atggcaacggcgacagcgaacgcgtcaggggcgacggtgacggcgaagagaaagccggtgttcataaaggtggaggagattcagccaggcacgagcggccacaccctcaccgtcaaggtcgtcagctccaatccggtcaaggtcacctccaagaacgccggcgcccgatcctccctctcctctcgccctcttcagccccctcggatcgctgagtgcctcgtcggcgatgagactggcaccattgtcttcactgctcgcaatgaccaagttgacattatgacgcccggcaccactgtgatcctgcgcaatgcaaagattgacatgttcaaggggactatgaggcttgcagttgataaatggggtcgtgttgaagttacagaaccggccagctttgaagtcaaggaggccaacaatctttctcttgtcgagtatgaattagttagtgttgcggaaacagatcagaaaagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

16.7

Weight (kDa)

8.76

Isoelectric Point (pI)

27.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03810 AT4G28440
malus_domestica	MD09G1242500.v1.1
prunus_persica	Prupe.3G134500_v2.0.a1
pyrus_communis	pycom09g16100
rosa_chinensis	RchiOBHm_Chr2g0127301 RchiOBHm_Chr2g0127851
rosa_multiflora	Rmu_sc0001725.1_g000028 Rmu_sc0007523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116320 Rroxscaffold_6G00409990
rosa_rugosa	Rorug01G0241900 Rorug02G0275300
rosa_samantha	Rh2AG176100 Rh2AG326400 Rh2BG335900 Rh2BG411700 Rh2CG196400 Rh2CG314100 Rh2DG353600 Rh3CG304000 Rh4AG061400 Rh4BG059900 Rh4CG065600 Rh5AG420800 Rh5BG346800 Rh5BG492700 Rh5CG516700 Rh6CG032800 Rh6DG030600
rosa_wichuraiana	Rw0G005980 Rw1G039040 Rw2G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	305
AccB1I	GGYRCC	3 cut(s)	161, 236, 287
AccBSI	CCGCTC	1 cut(s)	96
AccII	CGCG	1 cut(s)	23
AciI	CCGC	2 cut(s)	96, 449
AclWI	GGATC	3 cut(s)	162, 212, 292
AcoI	YGGCCR	2 cut(s)	97, 384
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	2 cut(s)	162, 281
AflIII	ACRYGT	2 cut(s)	21, 321
AgsI	TTSAA	3 cut(s)	328, 371, 395
AjnI	CCWGG	1 cut(s)	85
AleI	CACNNNNGTG	1 cut(s)	293
AluBI	AGCT	3 cut(s)	126, 390, 468
AluI	AGCT	3 cut(s)	126, 390, 468
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	3 cut(s)	162, 212, 292
AoxI	GGCC	3 cut(s)	97, 384, 405
AspLEI	GCGC	2 cut(s)	164, 306
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	3 cut(s)	49, 100, 136
BanI	GGYRCC	3 cut(s)	161, 236, 287
BauI	CACGAG	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	238
BceAI	ACGGC	2 cut(s)	24, 57
BciT130I	CCWGG	1 cut(s)	87
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	224
BfoI	RGCGCY	1 cut(s)	165
BglI	GCCNNNNNGGC	1 cut(s)	222
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
Bme1390I	CCNGG	2 cut(s)	87, 285
BmiI	GGNNCC	3 cut(s)	163, 238, 289
BmrFI	CCNGG	2 cut(s)	87, 285
BpiI	GAAGAC	1 cut(s)	238
BpuMI	CCSGG	1 cut(s)	285
BsaHI	GRCGYC	2 cut(s)	162, 281
BsaJI	CCNNGG	1 cut(s)	200
BsaWI	WCCGGW	1 cut(s)	133
Bse118I	RCCGGY	3 cut(s)	55, 158, 382
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	2 cut(s)	265, 313
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	200
BseMI	GCAATG	2 cut(s)	265, 313
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	2 cut(s)	89, 169
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	3 cut(s)	99, 386, 407
BshNI	GGYRCC	3 cut(s)	161, 236, 287
BsiSI	CCGG	5 cut(s)	56, 134, 159, 285, 383
BslFI	GGGAC	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	3 cut(s)	99, 386, 407
Bsp143I	GATC	4 cut(s)	167, 204, 297, 457
BspACI	CCGC	2 cut(s)	96, 449
BspANI	GGCC	3 cut(s)	99, 386, 407
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	3 cut(s)	163, 238, 289
BspPI	GGATC	3 cut(s)	162, 212, 292
BspT107I	GGYRCC	3 cut(s)	161, 236, 287
BsrBI	CCGCTC	1 cut(s)	96
BsrDI	GCAATG	2 cut(s)	265, 313
BsrFI	RCCGGY	3 cut(s)	55, 158, 382
BsrI	ACTGG	1 cut(s)	238
BssAI	RCCGGY	3 cut(s)	55, 158, 382
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	4 cut(s)	167, 204, 297, 457
BssNI	GRCGYC	2 cut(s)	162, 281
BssSI	CACGAG	1 cut(s)	91
Bst2BI	CACGAG	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	3 cut(s)	37, 112, 295
Bst6I	CTCTTC	2 cut(s)	41, 195
BstACI	GRCGYC	2 cut(s)	162, 281
BstC8I	GCNNGC	4 cut(s)	160, 256, 345, 388
BstDEI	CTNAG	1 cut(s)	210
BstEII	GGTNACC	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	23
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	2 cut(s)	164, 306
BstKTI	GATC	4 cut(s)	170, 207, 300, 460
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	4 cut(s)	167, 204, 297, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 96, 222
BstNI	CCWGG	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	325
BstPI	GGTNACC	1 cut(s)	142
BstSCI	CCNGG	2 cut(s)	85, 283
BstUI	CGCG	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	99, 386, 407
BtgZI	GCGATG	1 cut(s)	240
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	2 cut(s)	249, 291
Cac8I	GCNNGC	4 cut(s)	160, 256, 345, 388
CfoI	GCGC	2 cut(s)	164, 306
Cfr10I	RCCGGY	3 cut(s)	55, 158, 382
CseI	GACGC	2 cut(s)	12, 289
CviAII	CATG	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	210
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	4 cut(s)	169, 206, 299, 459
DpnII	GATC	4 cut(s)	167, 204, 297, 457
EaeI	YGGCCR	2 cut(s)	97, 384
Eam1104I	CTCTTC	2 cut(s)	41, 195
EarI	CTCTTC	2 cut(s)	41, 195
Eco57I	CTGAAG	1 cut(s)	176
Eco91I	GGTNACC	1 cut(s)	142
EcoO65I	GGTNACC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	85
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
FaeI	CATG	1 cut(s)	325
FaiI	YATR	5 cut(s)	65, 278, 323, 338, 432
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	97
FspI	TGCGCA	1 cut(s)	305
GlaI	GCGC	2 cut(s)	163, 305
GluI	GCNGC	1 cut(s)	97
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	99, 386, 407
HapII	CCGG	5 cut(s)	56, 134, 159, 285, 383
HgaI	GACGC	2 cut(s)	12, 289
HhaI	GCGC	2 cut(s)	164, 306
Hin1I	GRCGYC	2 cut(s)	162, 281
Hin1II	CATG	1 cut(s)	325
Hin6I	GCGC	2 cut(s)	162, 304
HinP1I	GCGC	2 cut(s)	162, 304
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	5 cut(s)	56, 134, 159, 285, 383
HphI	GGTGA	3 cut(s)	49, 100, 136
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	2 cut(s)	204, 462
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	2 cut(s)	37, 224
HpyCH4III	ACNGT	3 cut(s)	37, 112, 295
HpyCH4V	TGCA	2 cut(s)	311, 347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 96, 222
HpyF3I	CTNAG	1 cut(s)	210
Hsp92I	GRCGYC	2 cut(s)	162, 281
Hsp92II	CATG	1 cut(s)	325
HspAI	GCGC	2 cut(s)	162, 304
KasI	GGCGCC	1 cut(s)	161
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	167, 204, 297, 457
LmnI	GCTCC	1 cut(s)	131
MaeIII	GTNAC	3 cut(s)	37, 142, 373
MalI	GATC	4 cut(s)	169, 206, 299, 459
MbiI	CCGCTC	1 cut(s)	96
MboI	GATC	4 cut(s)	167, 204, 297, 457
MboII	GAAGA	3 cut(s)	58, 182, 238
MluCI	AATT	1 cut(s)	434
MluI	ACGCGT	1 cut(s)	21
Mly113I	GGCGCC	1 cut(s)	162
MreI	CGCCGGCG	1 cut(s)	158
MroNI	GCCGGC	1 cut(s)	158
MslI	CAYNNNNRTG	2 cut(s)	68, 293
MspI	CCGG	5 cut(s)	56, 134, 159, 285, 383
MspR9I	CCNGG	2 cut(s)	87, 285
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	3 cut(s)	29, 96, 222
NaeI	GCCGGC	1 cut(s)	160
NarI	GGCGCC	1 cut(s)	162
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	4 cut(s)	167, 204, 297, 457
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	3 cut(s)	163, 238, 289
NmuCI	GTSAC	2 cut(s)	37, 142
NsbI	TGCGCA	1 cut(s)	305
NspI	RCATGY	1 cut(s)	325
OliI	CACNNNNGTG	1 cut(s)	293
PciI	ACATGT	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 41
PdiI	GCCGGC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	98
PluTI	GGCGCC	1 cut(s)	165
PscI	ACATGT	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	85
PspEI	GGTNACC	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	3 cut(s)	163, 238, 289
RseI	CAYNNNNRTG	2 cut(s)	68, 293
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	4 cut(s)	167, 204, 297, 457
ScrFI	CCNGG	2 cut(s)	87, 285
SetI	ASST	7 cut(s)	72, 120, 128, 144, 149, 392, 470
SfoI	GGCGCC	1 cut(s)	163
SgrAI	CRCCGGYG	1 cut(s)	158
SmiMI	CAYNNNNRTG	2 cut(s)	68, 293
Sse9I	AATT	1 cut(s)	434
SsiI	CCGC	2 cut(s)	96, 449
SspDI	GGCGCC	1 cut(s)	161
StyD4I	CCNGG	2 cut(s)	85, 283
TaaI	ACNGT	3 cut(s)	37, 112, 295
TaqI	TCGA	1 cut(s)	426
TasI	AATT	1 cut(s)	434
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	79
TscAI	CASTG	2 cut(s)	256, 298
TseFI	GTSAC	2 cut(s)	37, 142
Tsp45I	GTSAC	2 cut(s)	37, 142
TspDTI	ATGAA	2 cut(s)	52, 447
TspRI	CASTG	2 cut(s)	256, 298
XceI	RCATGY	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.