Rh2BG411700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003987
Physical Location & Seq
Reverse (-)
58290489 .. 58291336
848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG411700.1

Sequence Viewer

Length: 291 bp
ATGGCGGTGCTCGATCCTCTCTCTCCTCTCTCCCTCTTCAGCCCCCTCGCATCACTGAGTGCCTCGTTAGCGATGAGACTGAAACCATTGTCTTCACTGCTCGCAATGACCAAGCCTGGTACCACTGTGATTCCACGCAATGCAAAGATTGACATGTTCATCAAAGGCACTATGAGGCTTGCAGTTGATAAATGGGGTCGTGTTGAAGTCACAAAACCAACCAGCTTTGAAGTTAAGGAGGTCAACAATCTTTCTCTTGTCGAGTATGAATTACTTAGTGTTGCTGAATGA

Protein Analysis

96

Amino Acids

10.48

Weight (kDa)

9.16

Isoelectric Point (pI)

7.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OB_Ssb-like PF21473 36 - 70 9.6e-13 Single-stranded DNA binding protein Ssb-like, OB fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 119
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 22
AdeI CACNNNGTG 1 cut(s) 59
AfaI GTAC 1 cut(s) 121
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 2 cut(s) 206, 230
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 1 cut(s) 225
AluI AGCT 1 cut(s) 225
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 8
Asp718I GGTACC 1 cut(s) 119
BaeI ACNNNNGTAYC 2 cut(s) 111, 144
BanI GGYRCC 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 12
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 84
Bse3DI GCAATG 2 cut(s) 111, 145
BseBI CCWGG 1 cut(s) 117
BseMI GCAATG 2 cut(s) 111, 145
BseMII CTCAG 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 15
BshNI GGYRCC 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 1 cut(s) 13
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 121
BspPI GGATC 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 119
BsrDI GCAATG 2 cut(s) 111, 145
BssMI GATC 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 41
BstC8I GCNNGC 2 cut(s) 102, 180
BstDEI CTNAG 2 cut(s) 56, 275
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 117
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 84
BtgZI GCGATG 1 cut(s) 86
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 3 cut(s) 53, 95, 123
Cac8I GCNNGC 2 cut(s) 102, 180
Csp6I GTAC 1 cut(s) 120
CviAII CATG 1 cut(s) 154
CviJI RGCY 4 cut(s) 42, 115, 178, 225
CviKI_1 RGCY 4 cut(s) 42, 115, 178, 225
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 2 cut(s) 56, 275
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
DraIII CACNNNGTG 1 cut(s) 59
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 115
FaeI CATG 1 cut(s) 157
FaiI YATR 3 cut(s) 155, 173, 267
FatI CATG 1 cut(s) 153
Hin1II CATG 1 cut(s) 157
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 143, 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 2 cut(s) 56, 275
Hsp92II CATG 1 cut(s) 157
KpnI GGTACC 1 cut(s) 123
Kzo9I GATC 1 cut(s) 13
LpnPI CCDG 3 cut(s) 102, 129, 235
LweI GCATC 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 2 cut(s) 28, 84
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 1 cut(s) 269
MnlI CCTC 7 cut(s) 27, 36, 44, 56, 73, 168, 232
MseI TTAA 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 1 cut(s) 13
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 208
NspI RCATGY 1 cut(s) 157
PciI ACATGT 1 cut(s) 153
PfeI GAWTC 1 cut(s) 130
PscI ACATGT 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 121
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 234
Sau3AI GATC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 12
SetI ASST 2 cut(s) 227, 243
SfaNI GCATC 1 cut(s) 59
Sse9I AATT 1 cut(s) 269
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 2 cut(s) 12, 261
TasI AATT 1 cut(s) 269
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 3 cut(s) 60, 102, 130
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 2 cut(s) 148, 282
TspRI CASTG 3 cut(s) 60, 102, 130
XceI RCATGY 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.