Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003987

Physical Location & Seq

Genomic Coordinates Reverse (-)

16184855 .. 16185960

Gene Structure 1106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCGACGACGACAGCGAATGATTTAGGGACAGTGACGGCGAAGAGAAAGCCGGTGTTCGTAAAGGTGGAGCAGCTCCAGCCAAACACGAACGGCCACACCCTCACGGTGAAGGTGGTGAGCTCGAAGCCGGTGAAGGTCACCAACAAGAACGGCGGTCGATCATCTTTGTCGTCTCGGCCTATTCAGCCCGCTCGCATCGCTGAGTGCCTCGTTGGCGATGAGACGGGGACCATTCTCTTCACCGCTCGCAATGACCAAGTTGACACAATGAAGCCAGACACAACTGTGAACCTGCGTAATGCAAAGATTGACATGTTCAAGGGGACCATGAGGCTAGCAGTCGACAAATGGGGACGTGTTGAAGTCACCGAACCAGCTAACTTCCAAGTTAAAGAGGATAACAATCTTTCTCTCATTGAGTACGAGTTGGTTAACGTTGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.43

Weight (kDa)

8.73

Isoelectric Point (pI)

28.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03810 AT4G28440
malus_domestica	MD09G1242500.v1.1
prunus_persica	Prupe.3G134500_v2.0.a1
pyrus_communis	pycom09g16100
rosa_chinensis	RchiOBHm_Chr2g0127301 RchiOBHm_Chr2g0127851
rosa_multiflora	Rmu_sc0001725.1_g000028 Rmu_sc0007523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116320 Rroxscaffold_6G00409990
rosa_rugosa	Rorug01G0241900 Rorug02G0275300
rosa_samantha	Rh2AG176100 Rh2AG326400 Rh2BG335900 Rh2BG411700 Rh2CG196400 Rh2CG314100 Rh2DG353600 Rh3CG304000 Rh4AG061400 Rh4BG059900 Rh4CG065600 Rh5AG420800 Rh5BG346800 Rh5BG492700 Rh5CG516700 Rh6CG032800 Rh6DG030600
rosa_wichuraiana	Rw0G005980 Rw1G039040 Rw2G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	303
AccBSI	CCGCTC	2 cut(s)	194, 248
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	3 cut(s)	156, 192, 246
AclI	AACGTT	1 cut(s)	438
AcoI	YGGCCR	1 cut(s)	94
AfaI	GTAC	1 cut(s)	425
AflIII	ACRYGT	2 cut(s)	315, 358
AgsI	TTSAA	3 cut(s)	322, 365, 443
AjiI	CACGTC	1 cut(s)	359
AleI	CACNNNNGTG	1 cut(s)	287
AluBI	AGCT	3 cut(s)	76, 123, 380
AluI	AGCT	3 cut(s)	76, 123, 380
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	2 cut(s)	180, 218
AoxI	GGCC	2 cut(s)	94, 179
ApeKI	GCWGC	1 cut(s)	73
AspS9I	GGNCC	2 cut(s)	231, 327
AsuHPI	GGTGA	6 cut(s)	121, 130, 133, 145, 235, 361
AsuNHI	GCTAGC	1 cut(s)	337
AvaII	GGWCC	2 cut(s)	231, 327
BanII	GRGCYC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	85
BceAI	ACGGC	3 cut(s)	54, 109, 169
BcoDI	GTCTC	2 cut(s)	180, 218
BfaI	CTAG	1 cut(s)	338
BfuAI	ACCTGC	1 cut(s)	303
BglI	GCCNNNNNGGC	1 cut(s)	216
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme18I	GGWCC	2 cut(s)	231, 327
BmgBI	CACGTC	1 cut(s)	359
BmgT120I	GGNCC	2 cut(s)	231, 327
BmiI	GGNNCC	2 cut(s)	232, 328
BmsI	GCATC	1 cut(s)	207
BmtI	GCTAGC	1 cut(s)	341
BpmI	CTGGAG	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	405
Bse118I	RCCGGY	2 cut(s)	52, 130
Bse3DI	GCAATG	1 cut(s)	259
Bse8I	GATNNNNATC	1 cut(s)	405
BseJI	GATNNNNATC	1 cut(s)	405
BseMI	GCAATG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	85
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	96, 181
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	125
BsiSI	CCGG	2 cut(s)	53, 131
BslFI	GGGAC	4 cut(s)	43, 244, 340, 369
BsmAI	GTCTC	2 cut(s)	180, 218
BsmBI	CGTCTC	2 cut(s)	180, 218
BsmFI	GGGAC	4 cut(s)	43, 244, 340, 369
BsnI	GGCC	2 cut(s)	96, 181
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	161
BspACI	CCGC	3 cut(s)	156, 192, 246
BspANI	GGCC	2 cut(s)	96, 181
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	232, 328
BspMI	ACCTGC	1 cut(s)	303
BspOI	GCTAGC	1 cut(s)	341
BsrBI	CCGCTC	2 cut(s)	194, 248
BsrDI	GCAATG	1 cut(s)	259
BsrFI	RCCGGY	2 cut(s)	52, 130
BssAI	RCCGGY	2 cut(s)	52, 130
BssMI	GATC	1 cut(s)	161
Bst4CI	ACNGT	3 cut(s)	34, 109, 289
Bst6I	CTCTTC	3 cut(s)	38, 245, 438
BstC8I	GCNNGC	4 cut(s)	192, 196, 250, 339
BstDEI	CTNAG	1 cut(s)	204
BstEII	GGTNACC	1 cut(s)	139
BstKTI	GATC	1 cut(s)	164
BstMAI	GTCTC	2 cut(s)	180, 218
BstMBI	GATC	1 cut(s)	161
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 187, 200, 216
BstNSI	RCATGY	1 cut(s)	319
BstPI	GGTNACC	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	96, 181
BtgZI	GCGATG	2 cut(s)	184, 234
BtrI	CACGTC	1 cut(s)	359
BtsIMutI	CAGTG	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	303
Cac8I	GCNNGC	4 cut(s)	192, 196, 250, 339
Cfr10I	RCCGGY	2 cut(s)	52, 130
Cfr13I	GGNCC	2 cut(s)	231, 327
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	2 cut(s)	316, 331
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	3 cut(s)	38, 245, 438
EarI	CTCTTC	3 cut(s)	38, 245, 438
Ecl136II	GAGCTC	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	125
Eco47I	GGWCC	2 cut(s)	231, 327
Eco53kI	GAGCTC	1 cut(s)	123
Eco91I	GGTNACC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	123
EcoO65I	GGTNACC	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	125
Esp3I	CGTCTC	2 cut(s)	180, 218
FaeI	CATG	2 cut(s)	319, 334
FaiI	YATR	2 cut(s)	317, 332
FaqI	GGGAC	4 cut(s)	43, 244, 340, 369
FatI	CATG	2 cut(s)	315, 330
FauI	CCCGC	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	96, 181
HapII	CCGG	2 cut(s)	53, 131
Hin1II	CATG	2 cut(s)	319, 334
HincII	GTYRAC	3 cut(s)	265, 346, 436
HindII	GTYRAC	3 cut(s)	265, 346, 436
HpaI	GTTAAC	1 cut(s)	436
HpaII	CCGG	2 cut(s)	53, 131
HphI	GGTGA	6 cut(s)	121, 130, 133, 145, 235, 361
Hpy166II	GTNNAC	4 cut(s)	265, 292, 346, 436
Hpy8I	GTNNAC	4 cut(s)	265, 292, 346, 436
Hpy99I	CGWCG	2 cut(s)	10, 13
HpyAV	CCTTC	2 cut(s)	106, 130
HpyCH4III	ACNGT	3 cut(s)	34, 109, 289
HpyCH4IV	ACGT	2 cut(s)	358, 438
HpyCH4V	TGCA	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 187, 200, 216
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	2 cut(s)	358, 438
Hsp92II	CATG	2 cut(s)	319, 334
KspAI	GTTAAC	1 cut(s)	436
Kzo9I	GATC	1 cut(s)	161
LmnI	GCTCC	2 cut(s)	70, 81
LpnPI	CCDG	6 cut(s)	66, 92, 144, 291, 308, 390
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	2 cut(s)	358, 438
MaeIII	GTNAC	3 cut(s)	34, 139, 367
MalI	GATC	1 cut(s)	163
MbiI	CCGCTC	2 cut(s)	194, 248
MboI	GATC	1 cut(s)	161
MboII	GAAGA	2 cut(s)	55, 232
MhlI	GDGCHC	1 cut(s)	125
MnlI	CCTC	4 cut(s)	113, 221, 327, 391
MseI	TTAA	2 cut(s)	393, 435
MslI	CAYNNNNRTG	1 cut(s)	287
MspI	CCGG	2 cut(s)	53, 131
MwoI	GCNNNNNNNGC	4 cut(s)	79, 187, 200, 216
NdeII	GATC	1 cut(s)	161
NheI	GCTAGC	1 cut(s)	337
NlaIII	CATG	2 cut(s)	319, 334
NlaIV	GGNNCC	2 cut(s)	232, 328
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	3 cut(s)	34, 139, 367
NspI	RCATGY	1 cut(s)	319
OliI	CACNNNNGTG	1 cut(s)	287
PciI	ACATGT	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	75
PscI	ACATGT	1 cut(s)	315
Psp124BI	GAGCTC	1 cut(s)	125
Psp1406I	AACGTT	1 cut(s)	438
PspEI	GGTNACC	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	232, 328
PspPI	GGNCC	2 cut(s)	231, 327
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	287
SacI	GAGCTC	1 cut(s)	125
SalI	GTCGAC	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	393, 435
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	1 cut(s)	161
Sau96I	GGNCC	2 cut(s)	231, 327
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	9 cut(s)	69, 78, 117, 125, 141, 297, 361, 382, 441
SfaNI	GCATC	1 cut(s)	207
SinI	GGWCC	2 cut(s)	231, 327
SmiMI	CAYNNNNRTG	1 cut(s)	287
SsiI	CCGC	3 cut(s)	156, 192, 246
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	1 cut(s)	125
TaaI	ACNGT	3 cut(s)	34, 109, 289
TaiI	ACGT	2 cut(s)	361, 441
TaqI	TCGA	3 cut(s)	125, 160, 345
Tru1I	TTAA	2 cut(s)	393, 435
Tru9I	TTAA	2 cut(s)	393, 435
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	3 cut(s)	34, 139, 367
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	3 cut(s)	34, 139, 367
TspDTI	ATGAA	1 cut(s)	287
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	2 cut(s)	231, 327
XceI	RCATGY	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.