Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003987

Physical Location & Seq

Genomic Coordinates Reverse (-)

18750937 .. 18761041

Gene Structure 10105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG196400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGAAGCCTAGTACCACTGTGATTCCATGCAATACAAAGATTGACATGTTCATCAAAGGCACTATGAGGCTTGCAGTTGATAAATGGGGTCGTGTTGAAGTCACAGAACCAGCCAACTTTGAAGTTAAGGAGGTCAACAATCTTTCTCTTGTCGAGTATGAATTACTTAGTGTTGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

No domains found.

Protein Analysis

60

Amino Acids

6.79

Weight (kDa)

5.02

Isoelectric Point (pI)

0.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_Ssb-like	PF21473	1 - 34	1.9e-10	Single-stranded DNA binding protein Ssb-like, OB fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03810 AT4G28440
malus_domestica	MD09G1242500.v1.1
prunus_persica	Prupe.3G134500_v2.0.a1
pyrus_communis	pycom09g16100
rosa_chinensis	RchiOBHm_Chr2g0127301 RchiOBHm_Chr2g0127851
rosa_multiflora	Rmu_sc0001725.1_g000028 Rmu_sc0007523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116320 Rroxscaffold_6G00409990
rosa_rugosa	Rorug01G0241900 Rorug02G0275300
rosa_samantha	Rh2AG176100 Rh2AG326400 Rh2BG335900 Rh2BG411700 Rh2CG196400 Rh2CG314100 Rh2DG353600 Rh3CG304000 Rh4AG061400 Rh4BG059900 Rh4CG065600 Rh5AG420800 Rh5BG346800 Rh5BG492700 Rh5CG516700 Rh6CG032800 Rh6DG030600
rosa_wichuraiana	Rw0G005980 Rw1G039040 Rw2G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	13
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	98, 122
BfaI	CTAG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	2 cut(s)	27, 46
CviJI	RGCY	3 cut(s)	7, 70, 113
CviKI_1	RGCY	3 cut(s)	7, 70, 113
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	1 cut(s)	167
FaeI	CATG	2 cut(s)	30, 49
FaiI	YATR	4 cut(s)	28, 47, 65, 159
FatI	CATG	2 cut(s)	26, 45
FspBI	CTAG	1 cut(s)	9
Hin1II	CATG	2 cut(s)	30, 49
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	30, 74
HpyF3I	CTNAG	1 cut(s)	167
Hsp92II	CATG	2 cut(s)	30, 49
LpnPI	CCDG	1 cut(s)	123
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	100
MluCI	AATT	1 cut(s)	161
MnlI	CCTC	2 cut(s)	60, 124
MseI	TTAA	1 cut(s)	126
NlaIII	CATG	2 cut(s)	30, 49
NmuCI	GTSAC	1 cut(s)	100
NspI	RCATGY	1 cut(s)	49
PciI	ACATGT	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	22
PscI	ACATGT	1 cut(s)	45
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	126
SetI	ASST	1 cut(s)	135
SgeI	CNNG	8 cut(s)	21, 39, 58, 83, 104, 122, 161, 166
Sse9I	AATT	1 cut(s)	161
SspMI	CTAG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	17, 40, 174
TspRI	CASTG	1 cut(s)	22
XceI	RCATGY	1 cut(s)	49
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.