Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001725.1

Orthogroup ID

OG0003987

Physical Location & Seq

Genomic Coordinates Forward (+)

92717 .. 93564

Gene Structure 848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001725.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atggcggtgctcgatcctctctctcctctctccctcttcagccccctcacatcactgagtgcctcgttagcgatgagactggaaccattgtcttcactgctcgcaatgaccaagcctggtaccacagtgattccacgcaatgtaaagattgacatgttcatcaaaggcactatgaggcttgcagttgataaatggggtcgtgttgaagtcacagaaccatccagctttgaagttaaggaggtcaacaatctttctcttgtcgagtatgaattacttagtgttgctgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

10.52

Weight (kDa)

5.1

Isoelectric Point (pI)

19.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03810 AT4G28440
malus_domestica	MD09G1242500.v1.1
prunus_persica	Prupe.3G134500_v2.0.a1
pyrus_communis	pycom09g16100
rosa_chinensis	RchiOBHm_Chr2g0127301 RchiOBHm_Chr2g0127851
rosa_multiflora	Rmu_sc0001725.1_g000028 Rmu_sc0007523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116320 Rroxscaffold_6G00409990
rosa_rugosa	Rorug01G0241900 Rorug02G0275300
rosa_samantha	Rh2AG176100 Rh2AG326400 Rh2BG335900 Rh2BG411700 Rh2CG196400 Rh2CG314100 Rh2DG353600 Rh3CG304000 Rh4AG061400 Rh4BG059900 Rh4CG065600 Rh5AG420800 Rh5BG346800 Rh5BG492700 Rh5CG516700 Rh6CG032800 Rh6DG030600
rosa_wichuraiana	Rw0G005980 Rw1G039040 Rw2G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	119
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	22
AdeI	CACNNNGTG	1 cut(s)	59
AfaI	GTAC	1 cut(s)	121
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	206, 230
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	1 cut(s)	225
AluI	AGCT	1 cut(s)	225
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	8
Asp718I	GGTACC	1 cut(s)	119
BaeI	ACNNNNGTAYC	2 cut(s)	111, 144
BanI	GGYRCC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	12
BccI	CCATC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	70
Bme1390I	CCNGG	1 cut(s)	117
BmiI	GGNNCC	2 cut(s)	84, 121
BmrFI	CCNGG	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	84
Bse3DI	GCAATG	2 cut(s)	111, 145
BseBI	CCWGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	218
BseMI	GCAATG	2 cut(s)	111, 145
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	15
BshNI	GGYRCC	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	84, 121
BspPI	GGATC	1 cut(s)	8
BspT107I	GGYRCC	1 cut(s)	119
BsrDI	GCAATG	2 cut(s)	111, 145
BsrI	ACTGG	1 cut(s)	84
BssMI	GATC	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	102, 180
BstDEI	CTNAG	2 cut(s)	56, 275
BstF5I	GGATG	1 cut(s)	218
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	115
BstV2I	GAAGAC	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	218
BtsI	GCAGTG	1 cut(s)	95
BtsIMutI	CAGTG	3 cut(s)	53, 95, 132
Cac8I	GCNNGC	2 cut(s)	102, 180
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	4 cut(s)	42, 115, 178, 225
CviKI_1	RGCY	4 cut(s)	42, 115, 178, 225
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	2 cut(s)	56, 275
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DraIII	CACNNNGTG	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	115
FaeI	CATG	1 cut(s)	157
FaiI	YATR	3 cut(s)	155, 173, 267
FatI	CATG	1 cut(s)	153
FokI	GGATG	1 cut(s)	205
Hin1II	CATG	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	244
Hpy8I	GTNNAC	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	2 cut(s)	56, 275
Hsp92II	CATG	1 cut(s)	157
KpnI	GGTACC	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	13
LpnPI	CCDG	4 cut(s)	65, 102, 129, 235
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	2 cut(s)	28, 84
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	1 cut(s)	269
MnlI	CCTC	7 cut(s)	27, 36, 44, 56, 73, 168, 232
MseI	TTAA	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	2 cut(s)	84, 121
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	157
PciI	ACATGT	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	130
PscI	ACATGT	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	84, 121
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	234
Sau3AI	GATC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	2 cut(s)	227, 243
Sse9I	AATT	1 cut(s)	269
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	2 cut(s)	12, 261
TasI	AATT	1 cut(s)	269
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	3 cut(s)	60, 102, 132
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	148, 282
TspRI	CASTG	3 cut(s)	60, 102, 132
XceI	RCATGY	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.