Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003987

Physical Location & Seq

Genomic Coordinates Forward (+)

14090181 .. 14091755

Gene Structure 1575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G134500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAGACGGCGACAGCGAGCGGTTCAGGGACAGTGACGGCGAAGAGAAAGCCGGTGTTCGTAAAGGTGGACCAACTACAGCCAAACACGAGCGGCCACACCCTCACGGTGAAGGTGGTGAGCTCGAAGCCGGTCAAGGTGACCAACAAGAACGGCGGCCGACCATCGTTCTCGTCTCGCCCTCTCCAGCCCTCTCGTATCGCCGAGTGCCTCGTTGGTGATGAGACTGGGACCATTCTCTTCACCGCTCGCAATGACCAAGTTGACACAATGAAGCCGGACACTACTGTGATCCTGCGTAATGCGAAGATTGATATGTTCAAGGGAACTATGAGGCTAGCAGTTGACAAATGGGGACGTGTTGAAGTCACTGAACCAGCTAACTTCCAAGTTAAAGAGGAAAACAATCTTTCTCTCGTTGAGTACGAATTGGTTAACGTTGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.36

Weight (kDa)

8.73

Isoelectric Point (pI)

28.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03810 AT4G28440
malus_domestica	MD09G1242500.v1.1
prunus_persica	Prupe.3G134500_v2.0.a1
pyrus_communis	pycom09g16100
rosa_chinensis	RchiOBHm_Chr2g0127301 RchiOBHm_Chr2g0127851
rosa_multiflora	Rmu_sc0001725.1_g000028 Rmu_sc0007523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116320 Rroxscaffold_6G00409990
rosa_rugosa	Rorug01G0241900 Rorug02G0275300
rosa_samantha	Rh2AG176100 Rh2AG326400 Rh2BG335900 Rh2BG411700 Rh2CG196400 Rh2CG314100 Rh2DG353600 Rh3CG304000 Rh4AG061400 Rh4BG059900 Rh4CG065600 Rh5AG420800 Rh5BG346800 Rh5BG492700 Rh5CG516700 Rh6CG032800 Rh6DG030600
rosa_wichuraiana	Rw0G005980 Rw1G039040 Rw2G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	21, 93, 248
AciI	CCGC	4 cut(s)	21, 93, 156, 246
AclI	AACGTT	1 cut(s)	438
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	2 cut(s)	94, 157
AfaI	GTAC	1 cut(s)	425
AflIII	ACRYGT	1 cut(s)	358
AgsI	TTSAA	3 cut(s)	322, 365, 443
AjiI	CACGTC	1 cut(s)	359
AleI	CACNNNNGTG	1 cut(s)	287
AluBI	AGCT	2 cut(s)	123, 380
AluI	AGCT	2 cut(s)	123, 380
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	2 cut(s)	180, 218
AlwI	GGATC	1 cut(s)	286
AoxI	GGCC	2 cut(s)	94, 157
AspS9I	GGNCC	2 cut(s)	70, 231
AsuHPI	GGTGA	5 cut(s)	121, 130, 151, 230, 235
AsuNHI	GCTAGC	1 cut(s)	337
AvaII	GGWCC	2 cut(s)	70, 231
BanII	GRGCYC	1 cut(s)	125
BauI	CACGAG	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	125
BccI	CCATC	1 cut(s)	172
BceAI	ACGGC	3 cut(s)	24, 54, 169
BcoDI	GTCTC	2 cut(s)	180, 218
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	77
BisI	GCNGC	2 cut(s)	94, 157
BlsI	GCNGC	2 cut(s)	95, 158
Bme18I	GGWCC	2 cut(s)	70, 231
BmgBI	CACGTC	1 cut(s)	359
BmgT120I	GGNCC	2 cut(s)	70, 231
BmiI	GGNNCC	1 cut(s)	232
BmrI	ACTGGG	1 cut(s)	237
BmtI	GCTAGC	1 cut(s)	341
BmuI	ACTGGG	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	170
Bse118I	RCCGGY	2 cut(s)	52, 130
Bse1I	ACTGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	259
BseMI	GCAATG	1 cut(s)	259
BseNI	ACTGG	1 cut(s)	232
BseX3I	CGGCCG	1 cut(s)	157
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	96, 159
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	125
BsiSI	CCGG	3 cut(s)	53, 131, 278
BslFI	GGGAC	3 cut(s)	43, 244, 369
BsmAI	GTCTC	2 cut(s)	180, 218
BsmBI	CGTCTC	1 cut(s)	180
BsmFI	GGGAC	3 cut(s)	43, 244, 369
BsnI	GGCC	2 cut(s)	96, 159
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	291
BspACI	CCGC	4 cut(s)	21, 93, 156, 246
BspANI	GGCC	2 cut(s)	96, 159
BspLI	GGNNCC	1 cut(s)	232
BspOI	GCTAGC	1 cut(s)	341
BspPI	GGATC	1 cut(s)	286
BsrBI	CCGCTC	3 cut(s)	21, 93, 248
BsrDI	GCAATG	1 cut(s)	259
BsrFI	RCCGGY	2 cut(s)	52, 130
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	2 cut(s)	52, 130
BssMI	GATC	1 cut(s)	291
BssSI	CACGAG	1 cut(s)	88
Bst2BI	CACGAG	1 cut(s)	88
Bst4CI	ACNGT	3 cut(s)	34, 109, 289
Bst6I	CTCTTC	3 cut(s)	38, 245, 438
BstC8I	GCNNGC	3 cut(s)	19, 250, 339
BstEII	GGTNACC	1 cut(s)	139
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	2 cut(s)	180, 218
BstMBI	GATC	1 cut(s)	291
BstMCI	CGRYCG	1 cut(s)	160
BstPI	GGTNACC	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	77
BstZI	CGGCCG	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	96, 159
BtrI	CACGTC	1 cut(s)	359
BtsIMutI	CAGTG	2 cut(s)	39, 369
Cac8I	GCNNGC	3 cut(s)	19, 250, 339
Cfr10I	RCCGGY	2 cut(s)	52, 130
Cfr13I	GGNCC	2 cut(s)	70, 231
Csp6I	GTAC	1 cut(s)	424
CviQI	GTAC	1 cut(s)	424
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
EaeI	YGGCCR	2 cut(s)	94, 157
EagI	CGGCCG	1 cut(s)	157
Eam1104I	CTCTTC	3 cut(s)	38, 245, 438
EarI	CTCTTC	3 cut(s)	38, 245, 438
Ecl136II	GAGCTC	1 cut(s)	123
EclXI	CGGCCG	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	125
Eco47I	GGWCC	2 cut(s)	70, 231
Eco52I	CGGCCG	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	123
Eco91I	GGTNACC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	123
EcoO65I	GGTNACC	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	125
Esp3I	CGTCTC	1 cut(s)	180
FaiI	YATR	2 cut(s)	317, 332
FaqI	GGGAC	3 cut(s)	43, 244, 369
Fnu4HI	GCNGC	2 cut(s)	94, 157
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	2 cut(s)	94, 157
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	2 cut(s)	94, 157
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	96, 159
HapII	CCGG	3 cut(s)	53, 131, 278
HincII	GTYRAC	3 cut(s)	265, 346, 436
HindII	GTYRAC	3 cut(s)	265, 346, 436
HpaI	GTTAAC	1 cut(s)	436
HpaII	CCGG	3 cut(s)	53, 131, 278
HphI	GGTGA	5 cut(s)	121, 130, 151, 230, 235
Hpy166II	GTNNAC	4 cut(s)	70, 265, 346, 436
Hpy8I	GTNNAC	4 cut(s)	70, 265, 346, 436
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	3 cut(s)	34, 109, 289
HpyCH4IV	ACGT	2 cut(s)	358, 438
HpySE526I	ACGT	2 cut(s)	358, 438
KspAI	GTTAAC	1 cut(s)	436
Kzo9I	GATC	1 cut(s)	291
LpnPI	CCDG	8 cut(s)	12, 66, 144, 200, 213, 291, 308, 390
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	2 cut(s)	358, 438
MaeIII	GTNAC	3 cut(s)	34, 139, 367
MalI	GATC	1 cut(s)	293
MbiI	CCGCTC	3 cut(s)	21, 93, 248
MboI	GATC	1 cut(s)	291
MboII	GAAGA	3 cut(s)	55, 232, 319
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	1 cut(s)	428
MnlI	CCTC	6 cut(s)	113, 192, 202, 221, 327, 391
MseI	TTAA	2 cut(s)	393, 435
MslI	CAYNNNNRTG	1 cut(s)	287
MspI	CCGG	3 cut(s)	53, 131, 278
NdeII	GATC	1 cut(s)	291
NheI	GCTAGC	1 cut(s)	337
NlaIV	GGNNCC	1 cut(s)	232
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	3 cut(s)	34, 139, 367
OliI	CACNNNNGTG	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 423
PkrI	GCNGC	2 cut(s)	95, 158
Psp124BI	GAGCTC	1 cut(s)	125
Psp1406I	AACGTT	1 cut(s)	438
PspEI	GGTNACC	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	2 cut(s)	70, 231
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	287
SacI	GAGCTC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	393, 435
SatI	GCNGC	2 cut(s)	94, 157
Sau3AI	GATC	1 cut(s)	291
Sau96I	GGNCC	2 cut(s)	70, 231
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	7 cut(s)	69, 117, 125, 141, 361, 382, 441
SfcI	CTRYAG	1 cut(s)	77
SinI	GGWCC	2 cut(s)	70, 231
SmiMI	CAYNNNNRTG	1 cut(s)	287
Sse9I	AATT	1 cut(s)	428
SsiI	CCGC	4 cut(s)	21, 93, 156, 246
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	1 cut(s)	125
TaaI	ACNGT	3 cut(s)	34, 109, 289
TaiI	ACGT	2 cut(s)	361, 441
TaqI	TCGA	1 cut(s)	125
TasI	AATT	1 cut(s)	428
TauI	GCSGC	2 cut(s)	96, 159
Tru1I	TTAA	2 cut(s)	393, 435
Tru9I	TTAA	2 cut(s)	393, 435
TscAI	CASTG	2 cut(s)	39, 376
TseFI	GTSAC	3 cut(s)	34, 139, 367
Tsp45I	GTSAC	3 cut(s)	34, 139, 367
TspDTI	ATGAA	1 cut(s)	287
TspRI	CASTG	2 cut(s)	39, 376
VpaK11BI	GGWCC	2 cut(s)	70, 231
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.