Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00234

Orthogroup ID

OG0003987

Physical Location & Seq

Genomic Coordinates Reverse (-)

181942 .. 182379

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G005980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAGATACCAGCACTGCATACCTGCTGTTACTAAAAATCCAGCAGGGAAGAGAAAGCCGGTGTTCATAAAGGTGGAGGAGATTCAGCCAGGCACGAGCGGCCACACCCTGACCGTTAAGGTCGCCAGATCCAATCCCGTCAAGGTCACCTCCAATAATGGAGGCACTCTTCAGCCCCCTCGCATCGCTGAGTGCCTAGTCGGTGATGAGACTGGGACCATTGTCTTCACTGCTCGCAATGACCAAATTGACATGTTCAAGGGGACTATGAGGCTTGCAGTTGATAAATGGGGTCGTGTTGAAGTCACAGAACCAGCCAGCTTTGAAGTCAAGGAGGCCAACAATCTTTCTCTTGTCAAGTATGAATTAGTTAGTGTTGCTGAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.14

Weight (kDa)

8.97

Isoelectric Point (pI)

24.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_Ssb-like	PF21473	28 - 85	9.8e-19	Single-stranded DNA binding protein Ssb-like, OB fold
OB_Ssb-like	PF21473	82 - 102	7.7e-08	Single-stranded DNA binding protein Ssb-like, OB fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03810 AT4G28440
malus_domestica	MD09G1242500.v1.1
prunus_persica	Prupe.3G134500_v2.0.a1
pyrus_communis	pycom09g16100
rosa_chinensis	RchiOBHm_Chr2g0127301 RchiOBHm_Chr2g0127851
rosa_multiflora	Rmu_sc0001725.1_g000028 Rmu_sc0007523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116320 Rroxscaffold_6G00409990
rosa_rugosa	Rorug01G0241900 Rorug02G0275300
rosa_samantha	Rh2AG176100 Rh2AG326400 Rh2BG335900 Rh2BG411700 Rh2CG196400 Rh2CG314100 Rh2DG353600 Rh3CG304000 Rh4AG061400 Rh4BG059900 Rh4CG065600 Rh5AG420800 Rh5BG346800 Rh5BG492700 Rh5CG516700 Rh6CG032800 Rh6DG030600
rosa_wichuraiana	Rw0G005980 Rw1G039040 Rw2G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	31
AccBSI	CCGCTC	1 cut(s)	99
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	252
AgsI	TTSAA	3 cut(s)	259, 302, 326
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	2 cut(s)	321, 387
AluI	AGCT	2 cut(s)	321, 387
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	123
AoxI	GGCC	2 cut(s)	100, 336
AspS9I	GGNCC	1 cut(s)	216
AsuHPI	GGTGA	2 cut(s)	139, 215
AvaII	GGWCC	1 cut(s)	216
BauI	CACGAG	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	197
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	216
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	90
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	192
BmuI	ACTGGG	1 cut(s)	222
BoxI	GACNNNNGTC	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	217
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	90
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	1 cut(s)	92
BshFI	GGCC	2 cut(s)	102, 338
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	2 cut(s)	229, 277
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	2 cut(s)	229, 277
BsnI	GGCC	2 cut(s)	102, 338
Bsp143I	GATC	1 cut(s)	128
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	2 cut(s)	102, 338
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	123
BsrBI	CCGCTC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	217
BssAI	RCCGGY	1 cut(s)	58
BssMI	GATC	1 cut(s)	128
BssSI	CACGAG	1 cut(s)	94
Bst2BI	CACGAG	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	2 cut(s)	44, 174
BstC8I	GCNNGC	3 cut(s)	235, 276, 319
BstDEI	CTNAG	1 cut(s)	189
BstEII	GGTNACC	1 cut(s)	145
BstKTI	GATC	1 cut(s)	131
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	1 cut(s)	128
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	90
BstNSI	RCATGY	1 cut(s)	256
BstPAI	GACNNNNGTC	1 cut(s)	221
BstPI	GGTNACC	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BsuRI	GGCC	2 cut(s)	102, 338
BtgZI	GCGATG	1 cut(s)	169
BtsI	GCAGTG	2 cut(s)	13, 228
BtsIMutI	CAGTG	2 cut(s)	13, 228
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	3 cut(s)	235, 276, 319
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	216
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	9 cut(s)	58, 88, 102, 175, 274, 317, 321, 338, 387
CviKI_1	RGCY	9 cut(s)	58, 88, 102, 175, 274, 317, 321, 338, 387
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	1 cut(s)	130
DpnII	GATC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	44, 174
EarI	CTCTTC	2 cut(s)	44, 174
Eco47I	GGWCC	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	155
Eco91I	GGTNACC	1 cut(s)	145
EcoO65I	GGTNACC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	88
FaeI	CATG	1 cut(s)	256
FaiI	YATR	5 cut(s)	20, 68, 254, 269, 363
FaqI	GGGAC	2 cut(s)	229, 277
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	100
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	1 cut(s)	100
HaeIII	GGCC	2 cut(s)	102, 338
HapII	CCGG	1 cut(s)	59
Hin1II	CATG	1 cut(s)	256
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	2 cut(s)	139, 215
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	18, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	128
LweI	GCATC	1 cut(s)	192
MaeI	CTAG	1 cut(s)	197
MaeIII	GTNAC	3 cut(s)	28, 145, 304
MalI	GATC	1 cut(s)	130
MbiI	CCGCTC	1 cut(s)	99
MboI	GATC	1 cut(s)	128
MboII	GAAGA	3 cut(s)	61, 161, 217
MflI	RGATCY	1 cut(s)	128
MluCI	AATT	2 cut(s)	246, 365
MnlI	CCTC	6 cut(s)	70, 155, 160, 189, 264, 328
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	1 cut(s)	71
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	99
NdeII	GATC	1 cut(s)	128
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	2 cut(s)	145, 304
NspI	RCATGY	1 cut(s)	256
PciI	ACATGT	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	101
PscI	ACATGT	1 cut(s)	252
PshAI	GACNNNNGTC	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	88
PspEI	GGTNACC	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	100
Sau3AI	GATC	1 cut(s)	128
Sau96I	GGNCC	1 cut(s)	216
ScrFI	CCNGG	1 cut(s)	90
SetI	ASST	7 cut(s)	25, 75, 123, 147, 152, 323, 389
SfaNI	GCATC	1 cut(s)	192
SinI	GGWCC	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	71
Sse9I	AATT	2 cut(s)	246, 365
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	115
TasI	AATT	2 cut(s)	246, 365
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	20, 235
TseFI	GTSAC	2 cut(s)	145, 304
Tsp45I	GTSAC	2 cut(s)	145, 304
TspDTI	ATGAA	2 cut(s)	55, 378
TspRI	CASTG	2 cut(s)	20, 235
VpaK11BI	GGWCC	1 cut(s)	216
XceI	RCATGY	1 cut(s)	256
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.