AT1G03810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003987
Physical Location & Seq
Forward (+)
958759 .. 959609
851 bp
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UTR
Exon/CDS
Intron
AT1G03810.1

Sequence Viewer

Length: 432 bp
ATGTCGACGACGGCGAATACTAACGCGACGACTGCGCCGAAGCGTAAACCAGTGTTTGTGAAGGTGGATCAGCTCAAACCAGGAACCAGCGGCCATACTCTGATCGTCAAAGTCCTTGAATCGAATCCCGTTAAACCGGCGATTCGTAAAAGTTCGTTGACGCAGCAGCCAATTTCATCTCCTCGTATCGCTGAGTGCCTAATTGGTGACGATACTGGATGCATTCTTTTCACCGCTCGCAACGACCAAGTTGATCTAATGAAGACTGGAGCAACAGTTATACTGAGGAATGCGAAGATCGACTTGTTCAAGGACACTATGAGAATGGCTGTTGACAGATGGGGACGCATTGAAATAACCGGTCCTGTTTCGTTCGAGGTTAACCGGGCCAACAATCTCTCTCTGGTCGAGTATGAAGTAATTACTGCTTAA

Protein Analysis

143

Amino Acids

15.67

Weight (kDa)

9.47

Isoelectric Point (pI)

30.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OB_Ssb-like PF21473 25 - 118 4.7e-43 Single-stranded DNA binding protein Ssb-like, OB fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 236
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 26
AciI CCGC 2 cut(s) 90, 234
AclWI GGATC 1 cut(s) 75
AcoI YGGCCR 1 cut(s) 91
AgeI ACCGGT 1 cut(s) 359
AgsI TTSAA 3 cut(s) 119, 310, 353
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AlwI GGATC 1 cut(s) 75
AoxI GGCC 2 cut(s) 91, 387
ApeKI GCWGC 2 cut(s) 163, 166
AsiGI ACCGGT 1 cut(s) 359
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 362, 387
AsuC2I CCSGG 1 cut(s) 386
AsuHPI GGTGA 2 cut(s) 218, 223
AvaII GGWCC 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 269
BbvI GCAGC 2 cut(s) 175, 178
BccI CCATC 1 cut(s) 333
BceAI ACGGC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 81
BcnI CCSGG 1 cut(s) 386
BisI GCNGC 3 cut(s) 91, 164, 167
BlsI GCNGC 3 cut(s) 92, 165, 168
Bme1390I CCNGG 2 cut(s) 81, 386
Bme18I GGWCC 1 cut(s) 362
BmgT120I GGNCC 2 cut(s) 362, 387
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 2 cut(s) 81, 386
BmsI GCATC 1 cut(s) 209
BpiI GAAGAC 1 cut(s) 269
BpmI CTGGAG 1 cut(s) 288
BpuMI CCSGG 1 cut(s) 386
BsaWI WCCGGW 1 cut(s) 359
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bse118I RCCGGY 2 cut(s) 136, 359
Bse1I ACTGG 3 cut(s) 50, 220, 271
BseBI CCWGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 224
BseMII CTCAG 2 cut(s) 183, 275
BseNI ACTGG 3 cut(s) 50, 220, 271
BseRI GAGGAG 1 cut(s) 171
BseXI GCAGC 2 cut(s) 175, 178
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 2 cut(s) 93, 389
BshTI ACCGGT 1 cut(s) 359
BsiSI CCGG 3 cut(s) 137, 360, 385
BslFI GGGAC 1 cut(s) 357
BsmFI GGGAC 1 cut(s) 357
BsmI GAATGC 2 cut(s) 222, 295
BsnI GGCC 2 cut(s) 93, 389
Bsp143I GATC 4 cut(s) 67, 102, 253, 297
BspACI CCGC 2 cut(s) 90, 234
BspANI GGCC 2 cut(s) 93, 389
BspCNI CTCAG 2 cut(s) 184, 276
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 1 cut(s) 75
BsrBI CCGCTC 1 cut(s) 236
BsrFI RCCGGY 2 cut(s) 136, 359
BsrI ACTGG 3 cut(s) 50, 220, 271
BssAI RCCGGY 2 cut(s) 136, 359
BssMI GATC 4 cut(s) 67, 102, 253, 297
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 2 cut(s) 192, 284
BstF5I GGATG 1 cut(s) 224
BstFNI CGCG 1 cut(s) 26
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 4 cut(s) 70, 105, 256, 300
BstMBI GATC 4 cut(s) 67, 102, 253, 297
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 2 cut(s) 79, 384
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 175, 178
BstV2I GAAGAC 1 cut(s) 269
BsuRI GGCC 2 cut(s) 93, 389
BtsCI GGATG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 238
CfoI GCGC 1 cut(s) 37
Cfr10I RCCGGY 2 cut(s) 136, 359
Cfr13I GGNCC 2 cut(s) 362, 387
CseI GACGC 2 cut(s) 169, 354
CspAI ACCGGT 1 cut(s) 359
CviJI RGCY 5 cut(s) 73, 93, 169, 329, 389
CviKI_1 RGCY 5 cut(s) 73, 93, 169, 329, 389
DdeI CTNAG 2 cut(s) 192, 284
DpnI GATC 4 cut(s) 69, 104, 255, 299
DpnII GATC 4 cut(s) 67, 102, 253, 297
EaeI YGGCCR 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 224
FaiI YATR 4 cut(s) 96, 281, 320, 414
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FaqI GGGAC 1 cut(s) 357
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 91, 164, 167
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 3 cut(s) 91, 164, 167
GlaI GCGC 1 cut(s) 36
GluI GCNGC 3 cut(s) 91, 164, 167
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 2 cut(s) 93, 389
HapII CCGG 3 cut(s) 137, 360, 385
HgaI GACGC 2 cut(s) 169, 354
HhaI GCGC 1 cut(s) 37
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 4 cut(s) 6, 159, 334, 382
HindII GTYRAC 4 cut(s) 6, 159, 334, 382
HinfI GANTC 3 cut(s) 119, 124, 142
HpaI GTTAAC 1 cut(s) 382
HpaII CCGG 3 cut(s) 137, 360, 385
HphI GGTGA 2 cut(s) 218, 223
Hpy166II GTNNAC 5 cut(s) 6, 47, 159, 334, 382
Hpy188I TCNGA 1 cut(s) 102
Hpy8I GTNNAC 5 cut(s) 6, 47, 159, 334, 382
Hpy99I CGWCG 3 cut(s) 10, 13, 31
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 1 cut(s) 222
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 2 cut(s) 192, 284
HspAI GCGC 1 cut(s) 35
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 4 cut(s) 67, 102, 253, 297
LmnI GCTCC 1 cut(s) 269
Lsp1109I GCAGC 2 cut(s) 175, 178
LweI GCATC 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 206
MalI GATC 4 cut(s) 69, 104, 255, 299
MbiI CCGCTC 1 cut(s) 236
MboI GATC 4 cut(s) 67, 102, 253, 297
MboII GAAGA 2 cut(s) 274, 307
MluCI AATT 3 cut(s) 171, 201, 420
MnlI CCTC 3 cut(s) 192, 279, 370
Mph1103I ATGCAT 1 cut(s) 224
MseI TTAA 3 cut(s) 132, 381, 430
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 3 cut(s) 137, 360, 385
MspR9I CCNGG 2 cut(s) 81, 386
Mva1269I GAATGC 2 cut(s) 222, 295
MvaI CCWGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 32
NciI CCSGG 1 cut(s) 386
NdeII GATC 4 cut(s) 67, 102, 253, 297
NlaIV GGNNCC 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 206
NsiI ATGCAT 1 cut(s) 224
PcsI WCGNNNNNNNCGW 2 cut(s) 11, 35
PctI GAATGC 2 cut(s) 222, 295
PfeI GAWTC 3 cut(s) 119, 124, 142
PinAI ACCGGT 1 cut(s) 359
PkrI GCNGC 3 cut(s) 92, 165, 168
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 2 cut(s) 362, 387
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 132, 381, 430
SatI GCNGC 3 cut(s) 91, 164, 167
Sau3AI GATC 4 cut(s) 67, 102, 253, 297
Sau96I GGNCC 2 cut(s) 362, 387
ScrFI CCNGG 2 cut(s) 81, 386
SetI ASST 3 cut(s) 66, 75, 381
SfaNI GCATC 1 cut(s) 209
SinI GGWCC 1 cut(s) 362
Sse9I AATT 3 cut(s) 171, 201, 420
SsiI CCGC 2 cut(s) 90, 234
StyD4I CCNGG 2 cut(s) 79, 384
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 5 cut(s) 5, 122, 300, 375, 408
TasI AATT 3 cut(s) 171, 201, 420
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 3 cut(s) 119, 124, 142
Tru1I TTAA 3 cut(s) 132, 381, 430
Tru9I TTAA 3 cut(s) 132, 381, 430
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 2 cut(s) 163, 166
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 3 cut(s) 165, 275, 429
TspRI CASTG 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 362
XmiI GTMKAC 1 cut(s) 5
Zsp2I ATGCAT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.