Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003987

Physical Location & Seq

Genomic Coordinates Forward (+)

43430458 .. 43431585

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00116320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCAACGGCGACAGCGAACGCGTCAGGGGCGACGGTGACGGCGAAGAGAAAGCCGGTGTTCATAAAGGTGGAGGAGATTCAGCCAGGCACGAGCGGCCACACCCTCACCGTCAAGGTCGTCAGCTCCAATCCGGTCAAGGTCACCTCTAAGAACGCCGGCGCCCGATCCTCCTCTCCTCTCGCCCTCTTCAGCCCCCTCGGATCGCTGAGTGCCTCGTCGGCGATGAGACTGGCACCATTGTCTTCACTGCTCGCAATGACCAAGATCTGTGTTTGTAGGGTGTTGGATTGTGGGCTTGTGGGTGTGGTTGACATGATAATAGGATTGTGGAGCATTTGTATCGTACGGAATATTGGAGTATTTTGGGTGTTTGACATTATGAAGCCCGGCACCACTGTGATCCTGCGCAATGCAAAGATTGACATGTTCAAGGGGACTATGAGGCTTGCAGTTGATAAATGGGGTCGTGTTGAAGTCACAGAACCAGCCAGCTTTGAAGTCAAGGAGGCCAACAATCTTTCTCTTGTTGAGTATGAATTAGTTAGTGTTGCGGAAACAGATCAGAAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

20.36

Weight (kDa)

9.3

Isoelectric Point (pI)

26.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_Ssb-like	PF21473	125 - 160	3.7e-17	Single-stranded DNA binding protein Ssb-like, OB fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03810 AT4G28440
malus_domestica	MD09G1242500.v1.1
prunus_persica	Prupe.3G134500_v2.0.a1
pyrus_communis	pycom09g16100
rosa_chinensis	RchiOBHm_Chr2g0127301 RchiOBHm_Chr2g0127851
rosa_multiflora	Rmu_sc0001725.1_g000028 Rmu_sc0007523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116320 Rroxscaffold_6G00409990
rosa_rugosa	Rorug01G0241900 Rorug02G0275300
rosa_samantha	Rh2AG176100 Rh2AG326400 Rh2BG335900 Rh2BG411700 Rh2CG196400 Rh2CG314100 Rh2DG353600 Rh3CG304000 Rh4AG061400 Rh4BG059900 Rh4CG065600 Rh5AG420800 Rh5BG346800 Rh5BG492700 Rh5CG516700 Rh6CG032800 Rh6DG030600
rosa_wichuraiana	Rw0G005980 Rw1G039040 Rw2G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	410
AccB1I	GGYRCC	3 cut(s)	161, 235, 392
AccBSI	CCGCTC	1 cut(s)	96
AccII	CGCG	1 cut(s)	23
AciI	CCGC	2 cut(s)	96, 554
AclWI	GGATC	3 cut(s)	162, 211, 397
AcoI	YGGCCR	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	175
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	348
AflIII	ACRYGT	2 cut(s)	21, 426
AgsI	TTSAA	3 cut(s)	433, 476, 500
AjnI	CCWGG	1 cut(s)	85
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	3 cut(s)	126, 495, 573
AluI	AGCT	3 cut(s)	126, 495, 573
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	3 cut(s)	162, 211, 397
AoxI	GGCC	2 cut(s)	97, 510
AspLEI	GCGC	2 cut(s)	164, 411
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	3 cut(s)	49, 100, 136
BanI	GGYRCC	3 cut(s)	161, 235, 392
BauI	CACGAG	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	237
BceAI	ACGGC	2 cut(s)	24, 57
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	1 cut(s)	87
BcnI	CCSGG	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	223
BfoI	RGCGCY	1 cut(s)	165
BglI	GCCNNNNNGGC	1 cut(s)	221
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
Bme1390I	CCNGG	2 cut(s)	87, 390
BmiI	GGNNCC	3 cut(s)	163, 237, 394
BmrFI	CCNGG	2 cut(s)	87, 390
BpiI	GAAGAC	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	199
BsaWI	WCCGGW	1 cut(s)	133
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bse118I	RCCGGY	2 cut(s)	55, 158
Bse1I	ACTGG	1 cut(s)	237
Bse3DI	GCAATG	2 cut(s)	264, 418
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	199
BseMI	GCAATG	2 cut(s)	264, 418
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	237
BseRI	GAGGAG	3 cut(s)	89, 163, 168
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	2 cut(s)	99, 512
BshNI	GGYRCC	3 cut(s)	161, 235, 392
BsiSI	CCGG	4 cut(s)	56, 134, 159, 390
BsiWI	CGTACG	1 cut(s)	346
BslFI	GGGAC	1 cut(s)	451
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	451
BsnI	GGCC	2 cut(s)	99, 512
Bsp143I	GATC	5 cut(s)	167, 203, 267, 402, 562
BspACI	CCGC	2 cut(s)	96, 554
BspANI	GGCC	2 cut(s)	99, 512
BspCNI	CTCAG	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	3 cut(s)	163, 237, 394
BspPI	GGATC	3 cut(s)	162, 211, 397
BspT107I	GGYRCC	3 cut(s)	161, 235, 392
BsrBI	CCGCTC	1 cut(s)	96
BsrDI	GCAATG	2 cut(s)	264, 418
BsrFI	RCCGGY	2 cut(s)	55, 158
BsrI	ACTGG	1 cut(s)	237
BssAI	RCCGGY	2 cut(s)	55, 158
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	5 cut(s)	167, 203, 267, 402, 562
BssNI	GRCGYC	1 cut(s)	162
BssSI	CACGAG	1 cut(s)	91
Bst2BI	CACGAG	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	3 cut(s)	37, 112, 400
Bst6I	CTCTTC	2 cut(s)	41, 194
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	4 cut(s)	160, 255, 450, 493
BstDEI	CTNAG	2 cut(s)	150, 209
BstEII	GGTNACC	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	23
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	2 cut(s)	164, 411
BstKTI	GATC	5 cut(s)	170, 206, 270, 405, 565
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	5 cut(s)	167, 203, 267, 402, 562
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 96, 221
BstNI	CCWGG	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	430
BstPI	GGTNACC	1 cut(s)	142
BstSCI	CCNGG	2 cut(s)	85, 388
BstUI	CGCG	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	99, 512
BtgZI	GCGATG	1 cut(s)	239
BtsI	GCAGTG	1 cut(s)	248
BtsIMutI	CAGTG	2 cut(s)	248, 396
Cac8I	GCNNGC	4 cut(s)	160, 255, 450, 493
CfoI	GCGC	2 cut(s)	164, 411
Cfr10I	RCCGGY	2 cut(s)	55, 158
CseI	GACGC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	2 cut(s)	316, 427
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	2 cut(s)	150, 209
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	5 cut(s)	169, 205, 269, 404, 564
DpnII	GATC	5 cut(s)	167, 203, 267, 402, 562
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	41, 194
EarI	CTCTTC	2 cut(s)	41, 194
Eco57I	CTGAAG	1 cut(s)	175
Eco91I	GGTNACC	1 cut(s)	142
EcoO65I	GGTNACC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	85
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
FaeI	CATG	2 cut(s)	319, 430
FaiI	YATR	6 cut(s)	65, 317, 383, 428, 443, 537
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	2 cut(s)	315, 426
Fnu4HI	GCNGC	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	97
FspI	TGCGCA	1 cut(s)	410
GlaI	GCGC	2 cut(s)	163, 410
GluI	GCNGC	1 cut(s)	97
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	99, 512
HapII	CCGG	4 cut(s)	56, 134, 159, 390
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	2 cut(s)	164, 411
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	2 cut(s)	319, 430
Hin6I	GCGC	2 cut(s)	162, 409
HinP1I	GCGC	2 cut(s)	162, 409
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	4 cut(s)	56, 134, 159, 390
HphI	GGTGA	3 cut(s)	49, 100, 136
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	2 cut(s)	203, 567
Hpy8I	GTNNAC	1 cut(s)	313
Hpy99I	CGWCG	2 cut(s)	37, 223
HpyCH4III	ACNGT	3 cut(s)	37, 112, 400
HpyCH4V	TGCA	2 cut(s)	416, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 96, 221
HpyF3I	CTNAG	2 cut(s)	150, 209
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	319, 430
HspAI	GCGC	2 cut(s)	162, 409
KasI	GGCGCC	1 cut(s)	161
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Kzo9I	GATC	5 cut(s)	167, 203, 267, 402, 562
LmnI	GCTCC	2 cut(s)	131, 333
MaeIII	GTNAC	3 cut(s)	37, 142, 478
MalI	GATC	5 cut(s)	169, 205, 269, 404, 564
MbiI	CCGCTC	1 cut(s)	96
MboI	GATC	5 cut(s)	167, 203, 267, 402, 562
MboII	GAAGA	3 cut(s)	58, 181, 237
MflI	RGATCY	1 cut(s)	267
MluCI	AATT	1 cut(s)	539
MluI	ACGCGT	1 cut(s)	21
Mly113I	GGCGCC	1 cut(s)	162
MmeI	TCCRAC	1 cut(s)	267
MreI	CGCCGGCG	1 cut(s)	158
MroNI	GCCGGC	1 cut(s)	158
MslI	CAYNNNNRTG	2 cut(s)	68, 398
MspI	CCGG	4 cut(s)	56, 134, 159, 390
MspR9I	CCNGG	2 cut(s)	87, 390
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	3 cut(s)	29, 96, 221
NaeI	GCCGGC	1 cut(s)	160
NarI	GGCGCC	1 cut(s)	162
NciI	CCSGG	1 cut(s)	390
NdeII	GATC	5 cut(s)	167, 203, 267, 402, 562
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	2 cut(s)	319, 430
NlaIV	GGNNCC	3 cut(s)	163, 237, 394
NmuCI	GTSAC	3 cut(s)	37, 142, 478
NsbI	TGCGCA	1 cut(s)	410
NspI	RCATGY	1 cut(s)	430
OliI	CACNNNNGTG	1 cut(s)	398
PciI	ACATGT	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 41
PdiI	GCCGGC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	79
Pfl23II	CGTACG	1 cut(s)	346
PkrI	GCNGC	1 cut(s)	98
PluTI	GGCGCC	1 cut(s)	165
PscI	ACATGT	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	85
PspEI	GGTNACC	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	85
PspLI	CGTACG	1 cut(s)	346
PspN4I	GGNNCC	3 cut(s)	163, 237, 394
PsuI	RGATCY	1 cut(s)	267
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
RseI	CAYNNNNRTG	2 cut(s)	68, 398
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	5 cut(s)	167, 203, 267, 402, 562
ScrFI	CCNGG	2 cut(s)	87, 390
SetI	ASST	7 cut(s)	72, 120, 128, 144, 149, 497, 575
SfoI	GGCGCC	1 cut(s)	163
SgrAI	CRCCGGYG	1 cut(s)	158
SmiMI	CAYNNNNRTG	2 cut(s)	68, 398
Sse9I	AATT	1 cut(s)	539
SsiI	CCGC	2 cut(s)	96, 554
SspDI	GGCGCC	1 cut(s)	161
SspI	AATATT	1 cut(s)	355
StyD4I	CCNGG	2 cut(s)	85, 388
TaaI	ACNGT	3 cut(s)	37, 112, 400
TasI	AATT	1 cut(s)	539
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	79
TscAI	CASTG	2 cut(s)	255, 403
TseFI	GTSAC	3 cut(s)	37, 142, 478
Tsp45I	GTSAC	3 cut(s)	37, 142, 478
TspDTI	ATGAA	3 cut(s)	52, 398, 552
TspGWI	ACGGA	1 cut(s)	364
TspRI	CASTG	2 cut(s)	255, 403
XceI	RCATGY	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.