Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003987

Physical Location & Seq

Genomic Coordinates Reverse (-)

32473548 .. 32480571

Gene Structure 7024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00409990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGAAGCCTAGTACCACTGTGATTCCATGCAATACAAAGATTGACATGTTCATCAAAGGCACTATGAGGCTTGCAGTTGATAAATGGGGTCGTGTTGAAGTCACAGAACCAGCCACCTTTGAAGTTAAGGAGGTGAAAAGCGGAAAAAGTAGCTTAGAGCAGATATCTAGAGTTTACGGAAATCAGAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

No domains found.

Protein Analysis

64

Amino Acids

7.22

Weight (kDa)

9.58

Isoelectric Point (pI)

8.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_Ssb-like	PF21473	1 - 34	2.3e-10	Single-stranded DNA binding protein Ssb-like, OB fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03810 AT4G28440
malus_domestica	MD09G1242500.v1.1
prunus_persica	Prupe.3G134500_v2.0.a1
pyrus_communis	pycom09g16100
rosa_chinensis	RchiOBHm_Chr2g0127301 RchiOBHm_Chr2g0127851
rosa_multiflora	Rmu_sc0001725.1_g000028 Rmu_sc0007523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116320 Rroxscaffold_6G00409990
rosa_rugosa	Rorug01G0241900 Rorug02G0275300
rosa_samantha	Rh2AG176100 Rh2AG326400 Rh2BG335900 Rh2BG411700 Rh2CG196400 Rh2CG314100 Rh2DG353600 Rh3CG304000 Rh4AG061400 Rh4BG059900 Rh4CG065600 Rh5AG420800 Rh5BG346800 Rh5BG492700 Rh5CG516700 Rh6CG032800 Rh6DG030600
rosa_wichuraiana	Rw0G005980 Rw1G039040 Rw2G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	141
AfaI	GTAC	1 cut(s)	13
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	98, 122
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	145
BfaI	CTAG	2 cut(s)	9, 168
BspACI	CCGC	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	3 cut(s)	27, 46, 192
CviJI	RGCY	4 cut(s)	7, 70, 113, 153
CviKI_1	RGCY	4 cut(s)	7, 70, 113, 153
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	1 cut(s)	154
Eco32I	GATATC	1 cut(s)	165
EcoRV	GATATC	1 cut(s)	165
FaeI	CATG	3 cut(s)	30, 49, 195
FaiI	YATR	4 cut(s)	28, 47, 65, 193
FatI	CATG	3 cut(s)	26, 45, 191
FspBI	CTAG	2 cut(s)	9, 168
Hin1II	CATG	3 cut(s)	30, 49, 195
HinfI	GANTC	1 cut(s)	22
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	1 cut(s)	168
Hpy8I	GTNNAC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	30, 74
HpyF3I	CTNAG	1 cut(s)	154
Hsp92II	CATG	3 cut(s)	30, 49, 195
LpnPI	CCDG	1 cut(s)	123
MaeI	CTAG	2 cut(s)	9, 168
MaeIII	GTNAC	1 cut(s)	100
MnlI	CCTC	2 cut(s)	60, 124
MseI	TTAA	1 cut(s)	126
NlaIII	CATG	3 cut(s)	30, 49, 195
NmuCI	GTSAC	1 cut(s)	100
NspI	RCATGY	1 cut(s)	49
PciI	ACATGT	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	22
PscI	ACATGT	1 cut(s)	45
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	126
SetI	ASST	3 cut(s)	119, 135, 155
SgeI	CNNG	7 cut(s)	21, 39, 58, 83, 104, 122, 180
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	2 cut(s)	9, 168
TaaI	ACNGT	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	17, 40
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	22
XbaI	TCTAGA	1 cut(s)	167
XceI	RCATGY	1 cut(s)	49
XspI	CTAG	2 cut(s)	9, 168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.