Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003987

Physical Location & Seq

Genomic Coordinates Reverse (-)

16788306 .. 16788625

Gene Structure 320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG176100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGAGTTTTCGGGAGTGTCTGACATTATGAAGCCTGGTACCACTGTGATCCCACGCAATGCAAAGATTGACATGTTCAATCAAGGGGACTTGAGGCTTGCAGTTGATAAATGGGGTTGTGTTGAAGTCACAGAACCAGCTAGCTTTGAAGTCAAGGAGGCCAAGAATCTTTCTCTTGTCGAGTATGAATTACTTAGTGTTGCTGAATCAGATCAGAAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

No domains found.

Protein Analysis

74

Amino Acids

8.19

Weight (kDa)

4.53

Isoelectric Point (pI)

10.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_Ssb-like	PF21473	7 - 43	3.6e-12	Single-stranded DNA binding protein Ssb-like, OB fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03810 AT4G28440
malus_domestica	MD09G1242500.v1.1
prunus_persica	Prupe.3G134500_v2.0.a1
pyrus_communis	pycom09g16100
rosa_chinensis	RchiOBHm_Chr2g0127301 RchiOBHm_Chr2g0127851
rosa_multiflora	Rmu_sc0001725.1_g000028 Rmu_sc0007523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116320 Rroxscaffold_6G00409990
rosa_rugosa	Rorug01G0241900 Rorug02G0275300
rosa_samantha	Rh2AG176100 Rh2AG326400 Rh2BG335900 Rh2BG411700 Rh2CG196400 Rh2CG314100 Rh2DG353600 Rh3CG304000 Rh4AG061400 Rh4BG059900 Rh4CG065600 Rh5AG420800 Rh5BG346800 Rh5BG492700 Rh5CG516700 Rh6CG032800 Rh6DG030600
rosa_wichuraiana	Rw0G005980 Rw1G039040 Rw2G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	43
AfaI	GTAC	1 cut(s)	40
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	3 cut(s)	79, 125, 149
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	3 cut(s)	140, 144, 222
AluI	AGCT	3 cut(s)	140, 144, 222
AlwI	GGATC	1 cut(s)	43
AoxI	GGCC	1 cut(s)	159
Asp718I	GGTACC	1 cut(s)	38
AsuNHI	GCTAGC	1 cut(s)	140
BaeI	ACNNNNGTAYC	2 cut(s)	30, 63
BanI	GGYRCC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	36
BfaI	CTAG	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	36
BmtI	GCTAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	112
Bse3DI	GCAATG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	36
BseMI	GCAATG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	161
BshNI	GGYRCC	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	48, 211
BspANI	GGCC	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	40
BspOI	GCTAGC	1 cut(s)	144
BspPI	GGATC	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	64
BssMI	GATC	2 cut(s)	48, 211
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	46
BstC8I	GCNNGC	2 cut(s)	99, 142
BstDEI	CTNAG	1 cut(s)	194
BstKTI	GATC	2 cut(s)	51, 214
BstMBI	GATC	2 cut(s)	48, 211
BstNI	CCWGG	1 cut(s)	36
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	2 cut(s)	99, 142
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	6 cut(s)	34, 97, 140, 144, 161, 222
CviKI_1	RGCY	6 cut(s)	34, 97, 140, 144, 161, 222
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	2 cut(s)	50, 213
DpnII	GATC	2 cut(s)	48, 211
EcoRII	CCWGG	1 cut(s)	34
FaeI	CATG	1 cut(s)	76
FaiI	YATR	3 cut(s)	29, 74, 186
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	1 cut(s)	72
FspBI	CTAG	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	161
Hin1II	CATG	1 cut(s)	76
HinfI	GANTC	2 cut(s)	166, 206
Hpy188I	TCNGA	3 cut(s)	22, 211, 216
Hpy188III	TCNNGA	1 cut(s)	12
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	2 cut(s)	62, 101
HpyF3I	CTNAG	1 cut(s)	194
Hsp92II	CATG	1 cut(s)	76
KpnI	GGTACC	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	48, 211
LpnPI	CCDG	3 cut(s)	21, 48, 150
MaeI	CTAG	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	2 cut(s)	50, 213
MboI	GATC	2 cut(s)	48, 211
MluCI	AATT	1 cut(s)	188
MnlI	CCTC	2 cut(s)	87, 151
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
NdeII	GATC	2 cut(s)	48, 211
NheI	GCTAGC	1 cut(s)	140
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	1 cut(s)	76
PciI	ACATGT	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	166, 206
PscI	ACATGT	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	40
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
Sau3AI	GATC	2 cut(s)	48, 211
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	3 cut(s)	142, 146, 224
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
Sse9I	AATT	1 cut(s)	188
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	46
TaqI	TCGA	1 cut(s)	180
TasI	AATT	1 cut(s)	188
TfiI	GAWTC	2 cut(s)	166, 206
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	44, 201
TspRI	CASTG	1 cut(s)	49
XceI	RCATGY	1 cut(s)	76
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.