FvH4_7g15480

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017361
Physical Location & Seq
Forward (+)
13407302 .. 13408510
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15480.t1

Sequence Viewer

Length: 648 bp
ATGGAGGAGGAGAAGAAAGAGCATCATCTACGTACGAATCAACTCATTAATGGTTCGAGGAGAGTACTAGAAGTAGAAGACGAAGAGCTGCGAATTCTTTCTCCAAAGGTTATGACTAGAGGGAGGAGAAGAATCAAGTACTGTGGGATTGCAATCGCAGTTGTTCTGCTCCAGATTGTTGTTCTAGGTGTGCTTTGCCTCACTCTCTTTCGCTTTAAAGATCCGAACATCAAGTTGGATTCAACTATTGTGGAGAATCTGAACGTGGGATTGGTGAGTACGCCCTCCACCATCAACATGAGTCTGAGTCAAGAAATTCTGATCAAGAATCAGAACTGGGGTGGGTTCAAGTATGATGAAAGTGCTGTGGTTATTTCCTATGGGGGTGTTACAGTTGGTCAAGGCACAATTTCTAAAGGTTCTATTAAGTTGAGAAAGAGCAAGATGGTTAGTGTTGTGGTGGAGGTAAAGGTTGAAGAAGTAGGCAATGATATTAGCTCAGGGGTTTTGGGTTTGAAGAGCTATACAAAGATTAGTGGGAAGGTCAGTATGGTTGGTATGGTGAAGAAAAGAAGAACTGGGGAGATGAATTGCAGCTTGAATATTAGTTTGGCCAACAAGAAAATCCAGGACTTCAATTGCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

216

Amino Acids

23.85

Weight (kDa)

9.59

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 106 - 199 2.9e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017361)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g15480
malus_domestica MD07G1130700.v1.1
prunus_persica Prupe.2G178400_v2.0.a1
pyrus_communis pycom07g12780
rosa_chinensis RchiOBHm_Chr1g0357801
rosa_laevigata RLG00000027996
rosa_roxburghii Rroxscaffold_4G00298510
rosa_rugosa Rorug01G0258700
rosa_samantha Rh1AG272600 Rh1BG239800 Rh1CG256500 Rh1DG268100
rosa_wichuraiana Rw1G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 215
AcoI YGGCCR 1 cut(s) 612
AcsI RAATTY 2 cut(s) 93, 315
AfaI GTAC 4 cut(s) 34, 66, 140, 280
AgsI TTSAA 6 cut(s) 243, 349, 476, 517, 601, 637
AjnI CCWGG 1 cut(s) 627
AjuI GAANNNNNNNTTGG 6 cut(s) 218, 250, 254, 286, 593, 625
AluBI AGCT 4 cut(s) 88, 498, 522, 597
AluI AGCT 4 cut(s) 88, 498, 522, 597
AlwI GGATC 1 cut(s) 215
AoxI GGCC 1 cut(s) 612
ApeKI GCWGC 2 cut(s) 88, 594
ApoI RAATTY 2 cut(s) 93, 315
AseI ATTAAT 1 cut(s) 48
Asp700I GAANNNNTTC 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 286, 574
BalI TGGCCA 1 cut(s) 614
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 75, 606
BccI CCATC 2 cut(s) 299, 439
BciT130I CCWGG 1 cut(s) 629
BclI TGATCA 1 cut(s) 321
BfaI CTAG 3 cut(s) 68, 117, 185
BisI GCNGC 2 cut(s) 89, 595
BlsI GCNGC 2 cut(s) 90, 596
BmcAI AGTACT 2 cut(s) 66, 140
Bme1390I CCNGG 1 cut(s) 629
BmrFI CCNGG 1 cut(s) 629
BmrI ACTGGG 2 cut(s) 346, 588
BmsI GCATC 1 cut(s) 31
BmuI ACTGGG 2 cut(s) 346, 588
BpiI GAAGAC 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 155
Bpu10I CCTNAGC 1 cut(s) 499
BsaAI YACGTR 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 152
Bse1I ACTGG 2 cut(s) 341, 583
Bse3DI GCAATG 1 cut(s) 493
Bse8I GATNNNNATC 1 cut(s) 152
BseBI CCWGG 1 cut(s) 629
BseJI GATNNNNATC 1 cut(s) 152
BseMI GCAATG 1 cut(s) 493
BseMII CTCAG 2 cut(s) 296, 513
BseNI ACTGG 2 cut(s) 341, 583
BseRI GAGGAG 4 cut(s) 20, 23, 73, 139
BseXI GCAGC 2 cut(s) 75, 606
BshFI GGCC 1 cut(s) 614
BsiWI CGTACG 1 cut(s) 32
BsnI GGCC 1 cut(s) 614
Bsp143I GATC 2 cut(s) 220, 321
BspANI GGCC 1 cut(s) 614
BspCNI CTCAG 2 cut(s) 297, 512
BspPI GGATC 1 cut(s) 215
BspQI GCTCTTC 2 cut(s) 78, 512
BsrDI GCAATG 1 cut(s) 493
BsrI ACTGG 2 cut(s) 341, 583
BssMI GATC 2 cut(s) 220, 321
Bst2UI CCWGG 1 cut(s) 629
Bst4CI ACNGT 2 cut(s) 143, 394
Bst6I CTCTTC 2 cut(s) 78, 512
BstBAI YACGTR 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 305, 499
BstKTI GATC 2 cut(s) 223, 324
BstMBI GATC 2 cut(s) 220, 321
BstNI CCWGG 1 cut(s) 629
BstSCI CCNGG 1 cut(s) 627
BstSNI TACGTA 1 cut(s) 32
BstV1I GCAGC 2 cut(s) 75, 606
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 1 cut(s) 614
BtsIMutI CAGTG 1 cut(s) 643
Csp6I GTAC 4 cut(s) 33, 65, 139, 279
CspCI CAANNNNNGTGG 4 cut(s) 124, 159, 231, 266
CviAII CATG 1 cut(s) 298
CviJI RGCY 5 cut(s) 88, 498, 522, 597, 614
CviKI_1 RGCY 5 cut(s) 88, 498, 522, 597, 614
CviQI GTAC 4 cut(s) 33, 65, 139, 279
DdeI CTNAG 2 cut(s) 305, 499
DpnI GATC 2 cut(s) 222, 323
DpnII GATC 2 cut(s) 220, 321
DraI TTTAAA 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 612
Eam1104I CTCTTC 2 cut(s) 78, 512
EarI CTCTTC 2 cut(s) 78, 512
Eco105I TACGTA 1 cut(s) 32
EcoRI GAATTC 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 627
FaeI CATG 1 cut(s) 301
FaiI YATR 7 cut(s) 113, 299, 354, 381, 525, 551, 560
FatI CATG 1 cut(s) 297
FbaI TGATCA 1 cut(s) 321
Fnu4HI GCNGC 2 cut(s) 89, 595
Fsp4HI GCNGC 2 cut(s) 89, 595
FspBI CTAG 3 cut(s) 68, 117, 185
GluI GCNGC 2 cut(s) 89, 595
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 1 cut(s) 614
Hin1II CATG 1 cut(s) 301
HinfI GANTC 7 cut(s) 37, 132, 239, 256, 301, 307, 328
HphI GGTGA 2 cut(s) 286, 574
Hpy188I TCNGA 5 cut(s) 225, 261, 306, 321, 333
Hpy188III TCNNGA 3 cut(s) 172, 311, 325
HpyAV CCTTC 1 cut(s) 535
HpyCH4III ACNGT 2 cut(s) 143, 394
HpyCH4IV ACGT 2 cut(s) 31, 264
HpyCH4V TGCA 2 cut(s) 152, 594
HpyF3I CTNAG 2 cut(s) 305, 499
HpySE526I ACGT 2 cut(s) 31, 264
Hsp92II CATG 1 cut(s) 301
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 2 cut(s) 220, 321
LguI GCTCTTC 2 cut(s) 78, 512
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 6 cut(s) 185, 322, 486, 564, 614, 641
Lsp1109I GCAGC 2 cut(s) 75, 606
LweI GCATC 1 cut(s) 31
MaeI CTAG 3 cut(s) 68, 117, 185
MaeII ACGT 2 cut(s) 31, 264
MaeIII GTNAC 1 cut(s) 388
MalI GATC 2 cut(s) 222, 323
MboI GATC 2 cut(s) 220, 321
MboII GAAGA 8 cut(s) 25, 89, 95, 141, 488, 529, 577, 585
MfeI CAATTG 1 cut(s) 637
MflI RGATCY 1 cut(s) 220
MlsI TGGCCA 1 cut(s) 614
MluCI AATT 5 cut(s) 93, 315, 408, 589, 637
MluNI TGGCCA 1 cut(s) 614
MlyI GAGTC 2 cut(s) 310, 316
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 6 cut(s) 51, 113, 117, 209, 295, 457
Mox20I TGGCCA 1 cut(s) 614
MroXI GAANNNNTTC 1 cut(s) 97
MscI TGGCCA 1 cut(s) 614
MseI TTAA 3 cut(s) 48, 216, 426
MslI CAYNNNNRTG 1 cut(s) 296
Msp20I TGGCCA 1 cut(s) 614
MspR9I CCNGG 1 cut(s) 629
MunI CAATTG 1 cut(s) 637
MvaI CCWGG 1 cut(s) 629
NdeII GATC 2 cut(s) 220, 321
NlaIII CATG 1 cut(s) 301
PciSI GCTCTTC 2 cut(s) 78, 512
PdmI GAANNNNTTC 1 cut(s) 97
PfeI GAWTC 5 cut(s) 37, 132, 239, 256, 328
Pfl23II CGTACG 1 cut(s) 32
PfoI TCCNGGA 1 cut(s) 627
PkrI GCNGC 2 cut(s) 90, 596
PleI GAGTC 2 cut(s) 309, 315
PpsI GAGTC 2 cut(s) 309, 315
Ppu21I YACGTR 1 cut(s) 32
PshBI ATTAAT 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 627
PspGI CCWGG 1 cut(s) 627
PspLI CGTACG 1 cut(s) 32
PsuI RGATCY 1 cut(s) 220
RsaI GTAC 4 cut(s) 34, 66, 140, 280
RsaNI GTAC 4 cut(s) 33, 65, 139, 279
RseI CAYNNNNRTG 1 cut(s) 296
SapI GCTCTTC 2 cut(s) 78, 512
SaqAI TTAA 3 cut(s) 48, 216, 426
SatI GCNGC 2 cut(s) 89, 595
Sau3AI GATC 2 cut(s) 220, 321
ScaI AGTACT 2 cut(s) 66, 140
SchI GAGTC 2 cut(s) 310, 316
ScrFI CCNGG 1 cut(s) 629
SfaNI GCATC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 296
SnaBI TACGTA 1 cut(s) 32
Sse9I AATT 5 cut(s) 93, 315, 408, 589, 637
SspI AATATT 1 cut(s) 604
SspMI CTAG 3 cut(s) 68, 117, 185
StyD4I CCNGG 1 cut(s) 627
TaaI ACNGT 2 cut(s) 143, 394
TaiI ACGT 2 cut(s) 34, 267
TaqI TCGA 1 cut(s) 56
TasI AATT 5 cut(s) 93, 315, 408, 589, 637
TatI WGTACW 2 cut(s) 64, 138
TfiI GAWTC 5 cut(s) 37, 132, 239, 256, 328
Tru1I TTAA 3 cut(s) 48, 216, 426
Tru9I TTAA 3 cut(s) 48, 216, 426
TseI GCWGC 2 cut(s) 88, 594
TspDTI ATGAA 2 cut(s) 372, 602
VspI ATTAAT 1 cut(s) 48
XapI RAATTY 2 cut(s) 93, 315
XmnI GAANNNNTTC 1 cut(s) 97
XspI CTAG 3 cut(s) 68, 117, 185
ZrmI AGTACT 2 cut(s) 66, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.