Prupe.2G178400_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0017361
Physical Location & Seq
Forward (+)
22275084 .. 22276253
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G178400.1

Sequence Viewer

Length: 648 bp
ATGGCTGATCACAAGGATCAACATCAGCAGCAGCAACCCCATGGCTCAAAGAGAGAAGAAGAAGAAGTCATAACAACATTTTCTCCCACGATATTTTCTCCCAAGTCATTTCCCAGGAGAAGAAGAATCAAATACTGTGGAATTGTCATTGCACTTGTTCTGCTCCAGATTGTAGTGCTTGGGGTGCTTTGCCTCACTGTCTTTCGCTTCAGGGATCCCAACGTCAAGCTGGCTGCAATTTCTGTCGAGAATTTCAGCCCGGCGCTTGGAACATCCACTGCCATCAACATGACACTGAGGGCAGAAATTAAGGTGAAGAATCAAAACTGGGGAAAGTTGAAATATGATGAGAGTGTTTTGGTTGTGTCACATGAGGGTTCTACAGTTGGAGAAGGAACAATTCCAAAAGGGTCTATTAAGATGAGGCACAGCAAGCAGGTGAGCGTTTCGGTGGAGGCAAAGCTTGATGGTATATCATCATCAAGCAGTGATATTAGTTCAGGGGTTTTGAATTTGAAGAGCTATGCCAAGCTGAGCGGGAAGGTGAGTATGGTGGGTCTGGTGAAGAAAAGAAGAAGTGGGGAAATGAATTGCAGTTTGACAATTAGTTTGGCCAGGCAGGCAATCCAGGACTTCCACTGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

216

Amino Acids

23.67

Weight (kDa)

9.75

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017361)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g15480
malus_domestica MD07G1130700.v1.1
prunus_persica Prupe.2G178400_v2.0.a1
pyrus_communis pycom07g12780
rosa_chinensis RchiOBHm_Chr1g0357801
rosa_laevigata RLG00000027996
rosa_roxburghii Rroxscaffold_4G00298510
rosa_rugosa Rorug01G0258700
rosa_samantha Rh1AG272600 Rh1BG239800 Rh1CG256500 Rh1DG268100
rosa_wichuraiana Rw1G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 427
Acc36I ACCTGC 1 cut(s) 427
AccBSI CCGCTC 1 cut(s) 537
AciI CCGC 1 cut(s) 537
AclWI GGATC 3 cut(s) 24, 209, 222
AcoI YGGCCR 1 cut(s) 612
AcsI RAATTY 2 cut(s) 250, 511
AcuI CTGAAG 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 3 cut(s) 340, 511, 517
AjnI CCWGG 3 cut(s) 113, 614, 627
AluBI AGCT 4 cut(s) 229, 463, 522, 532
AluI AGCT 4 cut(s) 229, 463, 522, 532
AlwI GGATC 3 cut(s) 24, 209, 222
AoxI GGCC 1 cut(s) 612
ApeKI GCWGC 3 cut(s) 28, 31, 233
ApoI RAATTY 2 cut(s) 250, 511
ArsI GACNNNNNNTTYG 2 cut(s) 592, 624
AspLEI GCGC 1 cut(s) 265
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 4 cut(s) 325, 451, 556, 574
BalI TGGCCA 1 cut(s) 614
BamHI GGATCC 1 cut(s) 214
BbvI GCAGC 3 cut(s) 40, 43, 220
BccI CCATC 2 cut(s) 290, 461
BciT130I CCWGG 3 cut(s) 115, 616, 629
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 1 cut(s) 260
BfmI CTRYAG 1 cut(s) 381
BfoI RGCGCY 1 cut(s) 266
BfuAI ACCTGC 1 cut(s) 427
BglI GCCNNNNNGGC 1 cut(s) 620
BisI GCNGC 3 cut(s) 29, 32, 234
BlpI GCTNAGC 1 cut(s) 533
BlsI GCNGC 3 cut(s) 30, 33, 235
Bme1390I CCNGG 4 cut(s) 115, 260, 616, 629
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 4 cut(s) 115, 260, 616, 629
BmrI ACTGGG 1 cut(s) 337
BmuI ACTGGG 1 cut(s) 337
BpmI CTGGAG 1 cut(s) 149
Bpu1102I GCTNAGC 1 cut(s) 533
BpuMI CCSGG 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 21
BsaJI CCNNGG 2 cut(s) 40, 113
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 332
Bse3DI GCAATG 1 cut(s) 147
Bse8I GATNNNNATC 1 cut(s) 21
BseBI CCWGG 3 cut(s) 115, 616, 629
BseDI CCNNGG 2 cut(s) 40, 113
BseGI GGATG 1 cut(s) 272
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 2 cut(s) 287, 524
BseNI ACTGG 1 cut(s) 332
BseXI GCAGC 3 cut(s) 40, 43, 220
BshFI GGCC 1 cut(s) 614
BsiSI CCGG 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 266
BsnI GGCC 1 cut(s) 614
Bsp143I GATC 3 cut(s) 7, 16, 214
Bsp1720I GCTNAGC 1 cut(s) 533
Bsp19I CCATGG 1 cut(s) 40
BspACI CCGC 1 cut(s) 537
BspANI GGCC 1 cut(s) 614
BspCNI CTCAG 2 cut(s) 288, 525
BspLI GGNNCC 1 cut(s) 216
BspMI ACCTGC 1 cut(s) 427
BspPI GGATC 3 cut(s) 24, 209, 222
BspQI GCTCTTC 1 cut(s) 512
BsrBI CCGCTC 1 cut(s) 537
BsrDI GCAATG 1 cut(s) 147
BsrI ACTGG 1 cut(s) 332
BssECI CCNNGG 2 cut(s) 40, 113
BssMI GATC 3 cut(s) 7, 16, 214
BssT1I CCWWGG 1 cut(s) 40
Bst2UI CCWGG 3 cut(s) 115, 616, 629
Bst4CI ACNGT 3 cut(s) 137, 199, 385
Bst6I CTCTTC 1 cut(s) 512
BstC8I GCNNGC 3 cut(s) 231, 434, 621
BstDEI CTNAG 2 cut(s) 296, 533
BstDSI CCRYGG 1 cut(s) 40
BstF5I GGATG 1 cut(s) 272
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 3 cut(s) 10, 19, 217
BstMBI GATC 3 cut(s) 7, 16, 214
BstMWI GCNNNNNNNGC 3 cut(s) 184, 433, 620
BstNI CCWGG 3 cut(s) 115, 616, 629
BstSCI CCNGG 4 cut(s) 113, 258, 614, 627
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 3 cut(s) 40, 43, 220
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 1 cut(s) 614
BtgI CCRYGG 1 cut(s) 40
BtsCI GGATG 1 cut(s) 272
BtsI GCAGTG 3 cut(s) 276, 493, 637
BtsIMutI CAGTG 5 cut(s) 195, 276, 293, 493, 637
BveI ACCTGC 1 cut(s) 427
Cac8I GCNNGC 3 cut(s) 231, 434, 621
CfoI GCGC 1 cut(s) 265
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 3 cut(s) 41, 289, 371
CviJI RGCY 9 cut(s) 5, 45, 229, 233, 258, 463, 522, 532, 614
CviKI_1 RGCY 9 cut(s) 5, 45, 229, 233, 258, 463, 522, 532, 614
DdeI CTNAG 2 cut(s) 296, 533
DpnI GATC 3 cut(s) 9, 18, 216
DpnII GATC 3 cut(s) 7, 16, 214
EaeI YGGCCR 1 cut(s) 612
Eam1104I CTCTTC 1 cut(s) 512
EarI CTCTTC 1 cut(s) 512
Eco130I CCWWGG 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 193
EcoRII CCWGG 3 cut(s) 113, 614, 627
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 3 cut(s) 44, 292, 374
FaiI YATR 8 cut(s) 42, 71, 290, 345, 372, 473, 525, 551
FatI CATG 3 cut(s) 40, 288, 370
FauI CCCGC 1 cut(s) 530
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 3 cut(s) 29, 32, 234
FokI GGATG 1 cut(s) 259
Fsp4HI GCNGC 3 cut(s) 29, 32, 234
GlaI GCGC 1 cut(s) 264
GluI GCNGC 3 cut(s) 29, 32, 234
GsuI CTGGAG 1 cut(s) 149
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 1 cut(s) 614
HapII CCGG 1 cut(s) 260
HhaI GCGC 1 cut(s) 265
Hin1II CATG 3 cut(s) 44, 292, 374
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 2 cut(s) 126, 319
HpaII CCGG 1 cut(s) 260
HphI GGTGA 4 cut(s) 325, 451, 556, 574
Hpy188III TCNNGA 2 cut(s) 166, 247
HpyAV CCTTC 2 cut(s) 386, 535
HpyCH4III ACNGT 3 cut(s) 137, 199, 385
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 3 cut(s) 152, 236, 594
HpyF10VI GCNNNNNNNGC 3 cut(s) 184, 433, 620
HpyF3I CTNAG 2 cut(s) 296, 533
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 3 cut(s) 44, 292, 374
HspAI GCGC 1 cut(s) 263
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 3 cut(s) 7, 16, 214
LguI GCTCTTC 1 cut(s) 512
LmnI GCTCC 1 cut(s) 168
Lsp1109I GCAGC 3 cut(s) 40, 43, 220
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 366
MalI GATC 3 cut(s) 9, 18, 216
MbiI CCGCTC 1 cut(s) 537
MboI GATC 3 cut(s) 7, 16, 214
MboII GAAGA 9 cut(s) 68, 71, 74, 132, 135, 328, 529, 577, 585
MflI RGATCY 1 cut(s) 214
MlsI TGGCCA 1 cut(s) 614
MluCI AATT 8 cut(s) 141, 237, 250, 306, 399, 511, 589, 603
MluNI TGGCCA 1 cut(s) 614
MmeI TCCRAC 1 cut(s) 367
MnlI CCTC 5 cut(s) 203, 291, 367, 417, 448
Mox20I TGGCCA 1 cut(s) 614
MscI TGGCCA 1 cut(s) 614
MseI TTAA 2 cut(s) 309, 417
MslI CAYNNNNRTG 1 cut(s) 287
Msp20I TGGCCA 1 cut(s) 614
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 4 cut(s) 115, 260, 616, 629
MvaI CCWGG 3 cut(s) 115, 616, 629
MwoI GCNNNNNNNGC 3 cut(s) 184, 433, 620
NciI CCSGG 1 cut(s) 260
NcoI CCATGG 1 cut(s) 40
NdeII GATC 3 cut(s) 7, 16, 214
NlaIII CATG 3 cut(s) 44, 292, 374
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 366
PaqCI CACCTGC 1 cut(s) 427
PciSI GCTCTTC 1 cut(s) 512
PfeI GAWTC 2 cut(s) 126, 319
PfoI TCCNGGA 1 cut(s) 627
PkrI GCNGC 3 cut(s) 30, 33, 235
Psp6I CCWGG 3 cut(s) 113, 614, 627
PspGI CCWGG 3 cut(s) 113, 614, 627
PspN4I GGNNCC 1 cut(s) 216
PsuI RGATCY 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 287
SapI GCTCTTC 1 cut(s) 512
SaqAI TTAA 2 cut(s) 309, 417
SatI GCNGC 3 cut(s) 29, 32, 234
Sau3AI GATC 3 cut(s) 7, 16, 214
ScrFI CCNGG 4 cut(s) 115, 260, 616, 629
SetI ASST 8 cut(s) 225, 231, 315, 441, 465, 524, 534, 546
SfcI CTRYAG 1 cut(s) 381
SmiMI CAYNNNNRTG 1 cut(s) 287
Sse9I AATT 8 cut(s) 141, 237, 250, 306, 399, 511, 589, 603
SsiI CCGC 1 cut(s) 537
StyD4I CCNGG 4 cut(s) 113, 258, 614, 627
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 3 cut(s) 137, 199, 385
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 246
TasI AATT 8 cut(s) 141, 237, 250, 306, 399, 511, 589, 603
TfiI GAWTC 2 cut(s) 126, 319
Tru1I TTAA 2 cut(s) 309, 417
Tru9I TTAA 2 cut(s) 309, 417
TscAI CASTG 5 cut(s) 202, 283, 300, 493, 644
TseFI GTSAC 1 cut(s) 366
TseI GCWGC 3 cut(s) 28, 31, 233
Tsp45I GTSAC 1 cut(s) 366
TspDTI ATGAA 1 cut(s) 602
TspRI CASTG 5 cut(s) 202, 283, 300, 493, 644
XapI RAATTY 2 cut(s) 250, 511
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.