Rorug01G0258700

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0017361
Physical Location & Seq
Forward (+)
36822782 .. 36828557
5776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0258700.1

Sequence Viewer

Length: 1071 bp
ATGATGACTCCAAGGCAAGTTTCTGAAGATCGAGGATCTCCGCAACATTTCAGGCACACTCCTTTGCAAGTAATCCATGTTGTTGGAAATTTCTTGAGAATATGGTCAATTTACTCCCTGTACCGTTACTTGTCTCAGACGGGGGCTTCAGTTGTACTATTTCTCTTCATTTGTCTGATCCCAGCATCCATCCTATTTCTAATTTTGCAGAAGCCTTGGAAGGGCAGGCCACTCTCAAATACACAGGTGGTTCCTTCTATTATAAATGGTGGTATAACAGCTCTGTACTTTATTTTGTGGGGAAAAGGCCTCAAATCATGTGGACCTCTTAGAGCTATAATGGCAGAGTATTCTGGTGCTATCCTTGGAGTACTCTCTGCAGTATTATATGGGCGGAAGGGTCACGCTTGGAAAAAGATAGGCGGGCTTATTGCAATGGTGGCGTCTTTCTACTTCTTATCTCAAGGGTGGGCCACGGAAACATACTCTCCATTCTCATTTAAAGATAACGTTGATGCTGAGGTTCAGCCAGAACAGGTGTTAGGTATGAAAGAGATGGCAATTCCAATCTTTGCAGGAATCTTATCAGCATTGAGGAGGGTGATTGCAAGGCGTGTTTCATTGAAGAATCAACTTAAAAGGCGACTTCATGCTCTAACTATTGCCTCTGCAACATGCTTCATGTTTCCTATTGCCATGTGGGATGTAATCATAGGATCAGCTTCTAGCAGCAGCAATAAGATGCCATTCTCTACCTGGGCTTTTCTAAGCACCATTCTTTTTGGAGTTATCTTGATATTCTATGTTGATAGTATCGCGGAAGAGAGATTACACATGGTTTTCTCTTCTCCAAAGCATTTGATGGTAGCTGGAGGATGCATAATCGTGATGGAAACGGTGTACAAATTGGACTTTTCTCTTCCAGGATTCCTAATTTGCTGCATAGTTTTGGGCTTTGGGATATACGAAGCAACTTCTTTGGAACGTGGTAGAAAAGATTCTTTCCAAAAGCCTGATTCATCGGATGGGATTTTGGGAGATGAAATTCAGATGTCTGCACTTCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

356

Amino Acids

39.47

Weight (kDa)

9.42

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017361)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g15480
malus_domestica MD07G1130700.v1.1
prunus_persica Prupe.2G178400_v2.0.a1
pyrus_communis pycom07g12780
rosa_chinensis RchiOBHm_Chr1g0357801
rosa_laevigata RLG00000027996
rosa_roxburghii Rroxscaffold_4G00298510
rosa_rugosa Rorug01G0258700
rosa_samantha Rh1AG272600 Rh1BG239800 Rh1CG256500 Rh1DG268100
rosa_wichuraiana Rw1G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 263
AccII CGCG 1 cut(s) 818
AciI CCGC 4 cut(s) 41, 394, 423, 818
AclI AACGTT 1 cut(s) 510
AclWI GGATC 3 cut(s) 43, 172, 724
AcsI RAATTY 2 cut(s) 88, 1044
AcuI CTGAAG 2 cut(s) 45, 132
AcyI GRCGYC 1 cut(s) 443
AfaI GTAC 5 cut(s) 122, 156, 287, 372, 902
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 1 cut(s) 625
AjnI CCWGG 2 cut(s) 755, 922
AjuI GAANNNNNNNTTGG 1 cut(s) 36
AluBI AGCT 4 cut(s) 281, 335, 722, 869
AluI AGCT 4 cut(s) 281, 335, 722, 869
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 3 cut(s) 43, 172, 724
AoxI GGCC 3 cut(s) 227, 307, 471
ApeKI GCWGC 3 cut(s) 729, 732, 939
ApoI RAATTY 2 cut(s) 88, 1044
Asp700I GAANNNNTTC 1 cut(s) 997
AspS9I GGNCC 2 cut(s) 323, 471
AsuHPI GGTGA 1 cut(s) 613
AvaII GGWCC 1 cut(s) 323
BarI GAAGNNNNNNTAC 2 cut(s) 813, 845
BbvCI CCTCAGC 1 cut(s) 519
BbvI GCAGC 3 cut(s) 741, 744, 926
BccI CCATC 5 cut(s) 197, 550, 856, 883, 1019
BciT130I CCWGG 2 cut(s) 757, 924
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 1 cut(s) 726
BfmI CTRYAG 1 cut(s) 378
BisI GCNGC 3 cut(s) 730, 733, 940
BlsI GCNGC 3 cut(s) 731, 734, 941
BmcAI AGTACT 1 cut(s) 372
Bme1390I CCNGG 2 cut(s) 757, 924
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 2 cut(s) 323, 471
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 2 cut(s) 757, 924
BmsI GCATC 4 cut(s) 194, 505, 732, 866
BpmI CTGGAG 1 cut(s) 891
Bpu10I CCTNAGC 1 cut(s) 519
BpuEI CTTGAG 2 cut(s) 115, 447
BsaHI GRCGYC 1 cut(s) 443
BsaJI CCNNGG 5 cut(s) 11, 215, 364, 474, 756
BsaXI ACNNNNNCTCC 2 cut(s) 472, 502
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 441
BseBI CCWGG 2 cut(s) 757, 924
BseDI CCNNGG 5 cut(s) 11, 215, 364, 474, 756
BseGI GGATG 5 cut(s) 185, 189, 709, 881, 1030
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 2 cut(s) 149, 510
BseRI GAGGAG 1 cut(s) 610
BseXI GCAGC 3 cut(s) 741, 744, 926
BseYI CCCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 1041
Bsh1236I CGCG 1 cut(s) 818
BshFI GGCC 3 cut(s) 229, 309, 473
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 138
BsnI GGCC 3 cut(s) 229, 309, 473
Bsp1407I TGTACA 1 cut(s) 900
Bsp143I GATC 4 cut(s) 28, 35, 177, 716
BspACI CCGC 4 cut(s) 41, 394, 423, 818
BspANI GGCC 3 cut(s) 229, 309, 473
BspCNI CTCAG 2 cut(s) 148, 511
BspFNI CGCG 1 cut(s) 818
BspLI GGNNCC 1 cut(s) 252
BspMAI CTGCAG 1 cut(s) 382
BspPI GGATC 3 cut(s) 43, 172, 724
BsrDI GCAATG 1 cut(s) 441
BsrGI TGTACA 1 cut(s) 900
BssECI CCNNGG 5 cut(s) 11, 215, 364, 474, 756
BssMI GATC 4 cut(s) 28, 35, 177, 716
BssNI GRCGYC 1 cut(s) 443
BssT1I CCWWGG 3 cut(s) 11, 215, 364
Bst2UI CCWGG 2 cut(s) 757, 924
Bst4CI ACNGT 2 cut(s) 125, 898
Bst6I CTCTTC 4 cut(s) 170, 816, 850, 924
BstACI GRCGYC 1 cut(s) 443
BstAUI TGTACA 1 cut(s) 900
BstC8I GCNNGC 2 cut(s) 227, 425
BstDEI CTNAG 4 cut(s) 135, 329, 519, 767
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 5 cut(s) 185, 189, 709, 881, 1030
BstFNI CGCG 1 cut(s) 818
BstKTI GATC 4 cut(s) 31, 38, 180, 719
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 4 cut(s) 28, 35, 177, 716
BstMWI GCNNNNNNNGC 2 cut(s) 341, 440
BstNI CCWGG 2 cut(s) 757, 924
BstNSI RCATGY 1 cut(s) 678
BstSCI CCNGG 2 cut(s) 755, 922
BstSFI CTRYAG 1 cut(s) 378
BstUI CGCG 1 cut(s) 818
BstV1I GCAGC 3 cut(s) 741, 744, 926
BstX2I RGATCY 1 cut(s) 35
BstXI CCANNNNNNTGG 1 cut(s) 83
BstYI RGATCY 1 cut(s) 35
BsuRI GGCC 3 cut(s) 229, 309, 473
BtgI CCRYGG 1 cut(s) 474
BtsCI GGATG 5 cut(s) 185, 189, 709, 881, 1030
Cac8I GCNNGC 2 cut(s) 227, 425
Cfr13I GGNCC 2 cut(s) 323, 471
CseI GACGC 1 cut(s) 432
Csp6I GTAC 5 cut(s) 121, 155, 286, 371, 901
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviAII CATG 7 cut(s) 77, 318, 650, 675, 682, 697, 835
CviQI GTAC 5 cut(s) 121, 155, 286, 371, 901
DdeI CTNAG 4 cut(s) 135, 329, 519, 767
DpnI GATC 4 cut(s) 30, 37, 179, 718
DpnII GATC 4 cut(s) 28, 35, 177, 716
DraI TTTAAA 1 cut(s) 502
Eam1104I CTCTTC 4 cut(s) 170, 816, 850, 924
EarI CTCTTC 4 cut(s) 170, 816, 850, 924
EciI GGCGGA 1 cut(s) 409
Eco130I CCWWGG 3 cut(s) 11, 215, 364
Eco147I AGGCCT 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 323
Eco57I CTGAAG 2 cut(s) 45, 132
EcoRII CCWGG 2 cut(s) 755, 922
EcoT14I CCWWGG 3 cut(s) 11, 215, 364
EcoT22I ATGCAT 1 cut(s) 881
ErhI CCWWGG 3 cut(s) 11, 215, 364
FaeI CATG 7 cut(s) 80, 321, 653, 678, 685, 700, 838
FatI CATG 7 cut(s) 76, 317, 649, 674, 681, 696, 834
FauI CCCGC 1 cut(s) 416
Fnu4HI GCNGC 3 cut(s) 730, 733, 940
FokI GGATG 5 cut(s) 172, 176, 716, 888, 1037
Fsp4HI GCNGC 3 cut(s) 730, 733, 940
FspBI CTAG 1 cut(s) 726
GluI GCNGC 3 cut(s) 730, 733, 940
GsaI CCCAGC 1 cut(s) 185
GsuI CTGGAG 1 cut(s) 891
HaeIII GGCC 3 cut(s) 229, 309, 473
HgaI GACGC 1 cut(s) 432
Hin1I GRCGYC 1 cut(s) 443
Hin1II CATG 7 cut(s) 80, 321, 653, 678, 685, 700, 838
HinfI GANTC 6 cut(s) 7, 579, 628, 927, 998, 1016
HphI GGTGA 1 cut(s) 613
Hpy166II GTNNAC 2 cut(s) 323, 901
Hpy188I TCNGA 5 cut(s) 25, 138, 177, 1024, 1050
Hpy188III TCNNGA 3 cut(s) 94, 793, 886
Hpy8I GTNNAC 2 cut(s) 323, 901
HpyAV CCTTC 3 cut(s) 214, 264, 391
HpyCH4III ACNGT 2 cut(s) 125, 898
HpyCH4IV ACGT 2 cut(s) 510, 985
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 440
HpyF3I CTNAG 4 cut(s) 135, 329, 519, 767
HpySE526I ACGT 2 cut(s) 510, 985
Hsp92I GRCGYC 1 cut(s) 443
Hsp92II CATG 7 cut(s) 80, 321, 653, 678, 685, 700, 838
Kzo9I GATC 4 cut(s) 28, 35, 177, 716
Lsp1109I GCAGC 3 cut(s) 741, 744, 926
LweI GCATC 4 cut(s) 194, 505, 732, 866
MaeI CTAG 1 cut(s) 726
MaeII ACGT 2 cut(s) 510, 985
MaeIII GTNAC 2 cut(s) 125, 401
MalI GATC 4 cut(s) 30, 37, 179, 718
MboI GATC 4 cut(s) 28, 35, 177, 716
MboII GAAGA 6 cut(s) 38, 157, 637, 833, 837, 911
MflI RGATCY 1 cut(s) 35
MluCI AATT 7 cut(s) 88, 108, 201, 561, 905, 933, 1044
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 8 cut(s) 26, 320, 336, 514, 588, 591, 676, 866
Mph1103I ATGCAT 1 cut(s) 881
MroXI GAANNNNTTC 1 cut(s) 997
MseI TTAA 2 cut(s) 501, 636
MslI CAYNNNNRTG 1 cut(s) 884
MspR9I CCNGG 2 cut(s) 757, 924
MvaI CCWGG 2 cut(s) 757, 924
MvnI CGCG 1 cut(s) 818
MwoI GCNNNNNNNGC 2 cut(s) 341, 440
NdeII GATC 4 cut(s) 28, 35, 177, 716
NlaIII CATG 7 cut(s) 80, 321, 653, 678, 685, 700, 838
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 401
NsiI ATGCAT 1 cut(s) 881
NspI RCATGY 1 cut(s) 678
PceI AGGCCT 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 997
PfeI GAWTC 5 cut(s) 579, 628, 927, 998, 1016
PfoI TCCNGGA 1 cut(s) 922
PkrI GCNGC 3 cut(s) 731, 734, 941
PsiI TTATAA 1 cut(s) 263
Psp1406I AACGTT 1 cut(s) 510
Psp6I CCWGG 2 cut(s) 755, 922
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 2 cut(s) 755, 922
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 2 cut(s) 323, 471
PstI CTGCAG 1 cut(s) 382
PsuI RGATCY 1 cut(s) 35
RsaI GTAC 5 cut(s) 122, 156, 287, 372, 902
RsaNI GTAC 5 cut(s) 121, 155, 286, 371, 901
RseI CAYNNNNRTG 1 cut(s) 884
SaqAI TTAA 2 cut(s) 501, 636
SatI GCNGC 3 cut(s) 730, 733, 940
Sau3AI GATC 4 cut(s) 28, 35, 177, 716
Sau96I GGNCC 2 cut(s) 323, 471
ScaI AGTACT 1 cut(s) 372
ScrFI CCNGG 2 cut(s) 757, 924
SfaNI GCATC 4 cut(s) 194, 505, 732, 866
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 884
SmlI CTYRAG 2 cut(s) 94, 462
SmoI CTYRAG 2 cut(s) 94, 462
Sse9I AATT 7 cut(s) 88, 108, 201, 561, 905, 933, 1044
SseBI AGGCCT 1 cut(s) 309
SsiI CCGC 4 cut(s) 41, 394, 423, 818
SspMI CTAG 1 cut(s) 726
StuI AGGCCT 1 cut(s) 309
StyD4I CCNGG 2 cut(s) 755, 922
StyI CCWWGG 3 cut(s) 11, 215, 364
TaaI ACNGT 2 cut(s) 125, 898
TaiI ACGT 2 cut(s) 513, 988
TaqI TCGA 1 cut(s) 31
TasI AATT 7 cut(s) 88, 108, 201, 561, 905, 933, 1044
TatI WGTACW 4 cut(s) 154, 285, 370, 900
TfiI GAWTC 5 cut(s) 579, 628, 927, 998, 1016
Tru1I TTAA 2 cut(s) 501, 636
Tru9I TTAA 2 cut(s) 501, 636
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 3 cut(s) 729, 732, 939
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 7 cut(s) 157, 563, 609, 638, 670, 1008, 1056
TspGWI ACGGA 1 cut(s) 491
VpaK11BI GGWCC 1 cut(s) 323
XapI RAATTY 2 cut(s) 88, 1044
XceI RCATGY 1 cut(s) 678
XcmI CCANNNNNNNNNTGG 1 cut(s) 753
XmnI GAANNNNTTC 1 cut(s) 997
XspI CTAG 1 cut(s) 726
ZrmI AGTACT 1 cut(s) 372
Zsp2I ATGCAT 1 cut(s) 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.