MD07G1130700.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0017361
Physical Location & Seq
Reverse (-)
18675084 .. 18675713
630 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1130700.v1.1.491

Sequence Viewer

Length: 630 bp
ATGGCTGATCAGATGAAGGAAGACCAACTCCATCAGCCCCATGGCTCAAGGAATCTAGAAGAAGCGGTACCAATATTTTCTGACAAGTCACTTCCCCGGAGAAGAAGAATCAAATTCTGTGGGATTGCACTAGCAGTTGTCATTCTCCAAATTGTAGTCATTGGTGTGCTTTGCCTTACTGTGTTCCGATTCCGAGATCCTAAAGTCACGATGGCGGGAATTTCTGTGGAGAATTTGAGCATGGTGGTTGGGAATCCTACCACAATCAACGTGACGTTGAGGGAGGAGATTAAGCTGAAGAATGCAAACTGGGGTCGGCTAAAATATGACCAAAGTGTTGTGGTTTTGTCACATGAGGGTGTCGCGGTTGGAGAAGCAACAGTTTCAAAAGGGTCTATTGCGATGAGGAGGAGCAAGGAGGTGAGCGTTTCGGTCGAGGCGAAGATTGATAGTGGTGGTGGAGCAAGCCGGGAGATTGGTTCTGGGGTTTTGAATTTGAAGAGCTATATGAAGGTGAGTGGGAAGGTGGAAATGGTGGGGATGGTGAGGAAAAGAAGAAGTGGGAAGATGGATTGCAGTTTCACTATTAGTTTGACCAGGCAGGCAATCCAGGAATTTCACTGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

210

Amino Acids

23.0

Weight (kDa)

9.79

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 97 - 187 9.6e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017361)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g15480
malus_domestica MD07G1130700.v1.1
prunus_persica Prupe.2G178400_v2.0.a1
pyrus_communis pycom07g12780
rosa_chinensis RchiOBHm_Chr1g0357801
rosa_laevigata RLG00000027996
rosa_roxburghii Rroxscaffold_4G00298510
rosa_rugosa Rorug01G0258700
rosa_samantha Rh1AG272600 Rh1BG239800 Rh1CG256500 Rh1DG268100
rosa_wichuraiana Rw1G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 67
AccB1I GGYRCC 1 cut(s) 67
AccII CGCG 1 cut(s) 365
AciI CCGC 3 cut(s) 65, 215, 365
AclWI GGATC 1 cut(s) 191
AcsI RAATTY 5 cut(s) 113, 219, 232, 493, 614
AcuI CTGAAG 1 cut(s) 317
AfaI GTAC 1 cut(s) 69
AgsI TTSAA 3 cut(s) 387, 493, 499
AjnI CCWGG 2 cut(s) 596, 609
AluBI AGCT 2 cut(s) 295, 504
AluI AGCT 2 cut(s) 295, 504
AlwI GGATC 1 cut(s) 191
ApoI RAATTY 5 cut(s) 113, 219, 232, 493, 614
Asp718I GGTACC 1 cut(s) 67
AsuC2I CCSGG 2 cut(s) 97, 470
AsuHPI GGTGA 3 cut(s) 433, 526, 556
BanI GGYRCC 1 cut(s) 67
BarI GAAGNNNNNNTAC 2 cut(s) 51, 83
BbsI GAAGAC 1 cut(s) 27
BccI CCATC 4 cut(s) 39, 205, 535, 562
BciT130I CCWGG 2 cut(s) 598, 611
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 2 cut(s) 97, 470
BfaI CTAG 2 cut(s) 56, 131
Bme1390I CCNGG 4 cut(s) 97, 470, 598, 611
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 4 cut(s) 97, 470, 598, 611
BmrI ACTGGG 1 cut(s) 319
BmuI ACTGGG 1 cut(s) 319
BpiI GAAGAC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 31
BpuMI CCSGG 2 cut(s) 97, 470
BsaJI CCNNGG 2 cut(s) 40, 95
Bse1I ACTGG 1 cut(s) 314
BseBI CCWGG 2 cut(s) 598, 611
BseDI CCNNGG 2 cut(s) 40, 95
BseGI GGATG 1 cut(s) 546
BseNI ACTGG 1 cut(s) 314
BseRI GAGGAG 3 cut(s) 299, 421, 424
Bsh1236I CGCG 1 cut(s) 365
Bsh1285I CGRYCG 1 cut(s) 435
BshNI GGYRCC 1 cut(s) 67
BsiEI CGRYCG 1 cut(s) 435
BsiSI CCGG 2 cut(s) 97, 469
BsmI GAATGC 1 cut(s) 307
Bsp143I GATC 2 cut(s) 7, 196
Bsp19I CCATGG 1 cut(s) 40
BspACI CCGC 3 cut(s) 65, 215, 365
BspFNI CGCG 1 cut(s) 365
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 1 cut(s) 191
BspQI GCTCTTC 1 cut(s) 494
BspT107I GGYRCC 1 cut(s) 67
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 2 cut(s) 40, 95
BssMI GATC 2 cut(s) 7, 196
BssT1I CCWWGG 1 cut(s) 40
Bst2UI CCWGG 2 cut(s) 598, 611
Bst4CI ACNGT 2 cut(s) 181, 382
Bst6I CTCTTC 1 cut(s) 494
BstC8I GCNNGC 2 cut(s) 466, 603
BstDSI CCRYGG 1 cut(s) 40
BstF5I GGATG 1 cut(s) 546
BstFNI CGCG 1 cut(s) 365
BstKTI GATC 2 cut(s) 10, 199
BstMBI GATC 2 cut(s) 7, 196
BstMCI CGRYCG 1 cut(s) 435
BstNI CCWGG 2 cut(s) 598, 611
BstSCI CCNGG 4 cut(s) 95, 468, 596, 609
BstUI CGCG 1 cut(s) 365
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BtgI CCRYGG 1 cut(s) 40
BtgZI GCGATG 1 cut(s) 416
BtsCI GGATG 1 cut(s) 546
BtsI GCAGTG 1 cut(s) 619
BtsIMutI CAGTG 1 cut(s) 619
Cac8I GCNNGC 2 cut(s) 466, 603
Csp6I GTAC 1 cut(s) 68
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 3 cut(s) 41, 241, 353
CviJI RGCY 7 cut(s) 5, 37, 45, 295, 319, 468, 504
CviKI_1 RGCY 7 cut(s) 5, 37, 45, 295, 319, 468, 504
CviQI GTAC 1 cut(s) 68
DpnI GATC 2 cut(s) 9, 198
DpnII GATC 2 cut(s) 7, 196
Eam1104I CTCTTC 1 cut(s) 494
EarI CTCTTC 1 cut(s) 494
Eco130I CCWWGG 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 317
EcoRII CCWGG 2 cut(s) 596, 609
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 3 cut(s) 44, 244, 356
FaiI YATR 6 cut(s) 42, 242, 327, 354, 507, 509
FatI CATG 3 cut(s) 40, 240, 352
FauI CCCGC 1 cut(s) 208
FbaI TGATCA 1 cut(s) 7
FokI GGATG 1 cut(s) 553
FspBI CTAG 2 cut(s) 56, 131
HapII CCGG 2 cut(s) 97, 469
Hin1II CATG 3 cut(s) 44, 244, 356
HinfI GANTC 4 cut(s) 52, 108, 189, 253
HpaII CCGG 2 cut(s) 97, 469
HphI GGTGA 3 cut(s) 433, 526, 556
Hpy188I TCNGA 4 cut(s) 12, 82, 188, 194
Hpy188III TCNNGA 2 cut(s) 56, 208
HpyAV CCTTC 3 cut(s) 10, 505, 517
HpyCH4III ACNGT 2 cut(s) 181, 382
HpyCH4IV ACGT 2 cut(s) 270, 275
HpyCH4V TGCA 3 cut(s) 128, 305, 576
HpySE526I ACGT 2 cut(s) 270, 275
Hsp92II CATG 3 cut(s) 44, 244, 356
KpnI GGTACC 1 cut(s) 71
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 2 cut(s) 7, 196
LguI GCTCTTC 1 cut(s) 494
LmnI GCTCC 2 cut(s) 411, 461
LpnPI CCDG 9 cut(s) 110, 295, 468, 482, 583, 587, 596, 610, 623
MaeI CTAG 2 cut(s) 56, 131
MaeII ACGT 2 cut(s) 270, 275
MaeIII GTNAC 4 cut(s) 87, 205, 271, 348
MalI GATC 2 cut(s) 9, 198
MboI GATC 2 cut(s) 7, 196
MboII GAAGA 9 cut(s) 32, 71, 114, 117, 310, 454, 511, 567, 577
MflI RGATCY 1 cut(s) 196
MluCI AATT 6 cut(s) 113, 150, 219, 232, 493, 614
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 8 cut(s) 273, 277, 349, 399, 402, 412, 430, 540
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 2 cut(s) 164, 357
MspI CCGG 2 cut(s) 97, 469
MspR9I CCNGG 4 cut(s) 97, 470, 598, 611
Mva1269I GAATGC 1 cut(s) 307
MvaI CCWGG 2 cut(s) 598, 611
MvnI CGCG 1 cut(s) 365
NciI CCSGG 2 cut(s) 97, 470
NcoI CCATGG 1 cut(s) 40
NdeII GATC 2 cut(s) 7, 196
NlaIII CATG 3 cut(s) 44, 244, 356
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 4 cut(s) 87, 205, 271, 348
PciSI GCTCTTC 1 cut(s) 494
PcsI WCGNNNNNNNCGW 1 cut(s) 437
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 4 cut(s) 52, 108, 189, 253
PfoI TCCNGGA 1 cut(s) 609
Psp6I CCWGG 2 cut(s) 596, 609
PspGI CCWGG 2 cut(s) 596, 609
PspN4I GGNNCC 1 cut(s) 69
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
RseI CAYNNNNRTG 2 cut(s) 164, 357
SapI GCTCTTC 1 cut(s) 494
SaqAI TTAA 1 cut(s) 291
Sau3AI GATC 2 cut(s) 7, 196
ScrFI CCNGG 4 cut(s) 97, 470, 598, 611
SetI ASST 7 cut(s) 273, 278, 297, 423, 506, 516, 528
SmiMI CAYNNNNRTG 2 cut(s) 164, 357
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
Sse9I AATT 6 cut(s) 113, 150, 219, 232, 493, 614
SsiI CCGC 3 cut(s) 65, 215, 365
SspI AATATT 1 cut(s) 75
SspMI CTAG 2 cut(s) 56, 131
StyD4I CCNGG 4 cut(s) 95, 468, 596, 609
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 2 cut(s) 181, 382
TaiI ACGT 2 cut(s) 273, 278
TaqI TCGA 1 cut(s) 435
TaqII GACCGA 1 cut(s) 421
TasI AATT 6 cut(s) 113, 150, 219, 232, 493, 614
TfiI GAWTC 4 cut(s) 52, 108, 189, 253
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 1 cut(s) 626
TseFI GTSAC 4 cut(s) 87, 205, 271, 348
Tsp45I GTSAC 4 cut(s) 87, 205, 271, 348
TspDTI ATGAA 2 cut(s) 29, 524
TspRI CASTG 1 cut(s) 626
XapI RAATTY 5 cut(s) 113, 219, 232, 493, 614
XbaI TCTAGA 1 cut(s) 55
XcmI CCANNNNNNNNNTGG 1 cut(s) 38
XspI CTAG 2 cut(s) 56, 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.