pycom07g12780

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0017361
Physical Location & Seq
Reverse (-)
14098130 .. 14098549
420 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g12780.1

Sequence Viewer

Length: 420 bp
ATGGCGGGAATTTCTACGGAGAATTTGAGCATCGTGGTTGGGAATCCTACCACAATCAACGTGACGCTGAGGGAGGAGATTAAGGTGAAGAATGCAAACTGGGGTCGCCTAAAATATGACCAAAGTGTTGTGGTTTTGTCACATGAGGGTGTGACGGTTGGAGAAGCAACAGTTTCAAAAGGGTCTATTGCGACAAGGAGGAGCAAGGAGGTGAGCGTTTTGGTAGAGGCGAAGATTTATGGTGGTGGCGGAGCAAGCGGGGAGATTAGTTCTGGGGTTTTGAATTTGAAGAGCTATATGAAGGTGAGTGGGAAGGTGGAAATGGTGGGGATGGTGTCGAAAAGAAGAAGTGGGAAGATGGATTGCAGTTTCACAATTAGTTTGACCAGGCAGGCAATTCAGGAATTTCACTGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

140

Amino Acids

14.89

Weight (kDa)

9.51

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 27 - 119 5.8e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017361)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g15480
malus_domestica MD07G1130700.v1.1
prunus_persica Prupe.2G178400_v2.0.a1
pyrus_communis pycom07g12780
rosa_chinensis RchiOBHm_Chr1g0357801
rosa_laevigata RLG00000027996
rosa_roxburghii Rroxscaffold_4G00298510
rosa_rugosa Rorug01G0258700
rosa_samantha Rh1AG272600 Rh1BG239800 Rh1CG256500 Rh1DG268100
rosa_wichuraiana Rw1G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 5, 249, 258
AcsI RAATTY 4 cut(s) 9, 22, 283, 404
AgsI TTSAA 3 cut(s) 177, 283, 289
AjnI CCWGG 1 cut(s) 386
AluBI AGCT 1 cut(s) 294
AluI AGCT 1 cut(s) 294
ApoI RAATTY 4 cut(s) 9, 22, 283, 404
AsuHPI GGTGA 3 cut(s) 97, 223, 316
BbvCI CCTCAGC 1 cut(s) 68
BccI CCATC 2 cut(s) 325, 352
BciT130I CCWGG 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 388
BmrFI CCNGG 1 cut(s) 388
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 109
Bpu10I CCTNAGC 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 104
BseBI CCWGG 1 cut(s) 388
BseGI GGATG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 2 cut(s) 89, 214
BsmI GAATGC 1 cut(s) 97
BspACI CCGC 3 cut(s) 5, 249, 258
BspCNI CTCAG 1 cut(s) 60
BspQI GCTCTTC 1 cut(s) 284
BsrI ACTGG 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 388
Bst4CI ACNGT 2 cut(s) 157, 172
Bst6I CTCTTC 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 256, 393
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 336
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstNI CCWGG 1 cut(s) 388
BstSCI CCNGG 1 cut(s) 386
BtsCI GGATG 1 cut(s) 336
BtsI GCAGTG 1 cut(s) 409
BtsIMutI CAGTG 1 cut(s) 409
Cac8I GCNNGC 2 cut(s) 256, 393
CseI GACGC 1 cut(s) 73
CviAII CATG 1 cut(s) 143
CviJI RGCY 1 cut(s) 294
CviKI_1 RGCY 1 cut(s) 294
DdeI CTNAG 1 cut(s) 68
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
EciI GGCGGA 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 386
FaeI CATG 1 cut(s) 146
FaiI YATR 5 cut(s) 117, 144, 240, 297, 299
FatI CATG 1 cut(s) 142
FauI CCCGC 1 cut(s) 251
FokI GGATG 1 cut(s) 343
HgaI GACGC 1 cut(s) 73
Hin1II CATG 1 cut(s) 146
HinfI GANTC 1 cut(s) 43
HphI GGTGA 3 cut(s) 97, 223, 316
Hpy188III TCNNGA 1 cut(s) 401
HpyAV CCTTC 2 cut(s) 295, 307
HpyCH4III ACNGT 2 cut(s) 157, 172
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 95, 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 1 cut(s) 146
LguI GCTCTTC 1 cut(s) 284
LmnI GCTCC 2 cut(s) 201, 251
LpnPI CCDG 6 cut(s) 85, 258, 373, 377, 386, 400
LweI GCATC 1 cut(s) 39
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 3 cut(s) 61, 138, 151
MboII GAAGA 5 cut(s) 100, 244, 301, 357, 367
MluCI AATT 6 cut(s) 9, 22, 283, 375, 396, 404
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 6 cut(s) 63, 67, 139, 192, 202, 220
MseI TTAA 1 cut(s) 81
MslI CAYNNNNRTG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 388
Mva1269I GAATGC 1 cut(s) 97
MvaI CCWGG 1 cut(s) 388
MwoI GCNNNNNNNGC 1 cut(s) 255
NlaIII CATG 1 cut(s) 146
NmuCI GTSAC 3 cut(s) 61, 138, 151
PciSI GCTCTTC 1 cut(s) 284
PctI GAATGC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 386
PspGI CCWGG 1 cut(s) 386
RseI CAYNNNNRTG 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 284
SaqAI TTAA 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 388
SetI ASST 6 cut(s) 63, 87, 213, 296, 306, 318
SfaNI GCATC 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 6 cut(s) 9, 22, 283, 375, 396, 404
SsiI CCGC 3 cut(s) 5, 249, 258
StyD4I CCNGG 1 cut(s) 386
TaaI ACNGT 2 cut(s) 157, 172
TaiI ACGT 1 cut(s) 63
TaqI TCGA 1 cut(s) 338
TasI AATT 6 cut(s) 9, 22, 283, 375, 396, 404
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 1 cut(s) 416
TseFI GTSAC 3 cut(s) 61, 138, 151
Tsp45I GTSAC 3 cut(s) 61, 138, 151
TspDTI ATGAA 1 cut(s) 314
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 1 cut(s) 416
XapI RAATTY 4 cut(s) 9, 22, 283, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.