Rroxscaffold_4G00298510

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017361
Physical Location & Seq
Reverse (-)
18341828 .. 18343091
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00298510.1

Sequence Viewer

Length: 642 bp
ATGGCGGAGAAGAAAGATCATCATCAACATTTAAATCAACTGAATGGCTCCAGGAGACAACTAGAAGCAGAAGAAGAAGAATTTCAGATTCTTTCTCCAAAGGCTATTACTAGAGGGAGAAGAAGGCTCAAGTACTGTGGGATTGCAATTGCAGTTGTTCTGCTCCAAGTTGTTGTTCTAGGTGTGCTTTGCCTCACTCTCTTTCGCTTTAAGGATCCGAACATCAAGTTGGATTCAGCCACTGTGGAGAATCTGAGCGTGGGCTTGACGTCTACACCCTCCACCATCAACATGACTGTGAATCAAGTAATTCTGGTGAAGAATCAGAACTGGGGAGGGTTGAAGTATGATGAGAGTGCTGTGGTTTTTTCCTATGGGGATGTTACAGTTGGTCAAGGCACAATTTCTAAAGGGTCAATTAAGATGAGGAAGAGCAAGAAGGTGACAGTTGTGGTGGAGGTAAAGATTGAAGGGATAGGCAGTGAGATTAACTCAGGGGTTTTGGGTTTGAAGAGCTATACAAAGATTAGTGGGAAGGTCAACATGGTGGGTATGGTGAAGAAAAGAAGAAGTGGGGAGATGGATTGCAGCTTGAGTATTAGTTTGGCCACCCAGAGAATTGAGGACTTCAATTGCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

213

Amino Acids

23.48

Weight (kDa)

9.53

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 104 - 196 9.6e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017361)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g15480
malus_domestica MD07G1130700.v1.1
prunus_persica Prupe.2G178400_v2.0.a1
pyrus_communis pycom07g12780
rosa_chinensis RchiOBHm_Chr1g0357801
rosa_laevigata RLG00000027996
rosa_roxburghii Rroxscaffold_4G00298510
rosa_rugosa Rorug01G0258700
rosa_samantha Rh1AG272600 Rh1BG239800 Rh1CG256500 Rh1DG268100
rosa_wichuraiana Rw1G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 272
AccI GTMKAC 1 cut(s) 272
AciI CCGC 1 cut(s) 5
AclWI GGATC 2 cut(s) 209, 222
AcoI YGGCCR 1 cut(s) 606
AcsI RAATTY 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 1 cut(s) 134
AgsI TTSAA 4 cut(s) 343, 470, 511, 631
AjnI CCWGG 1 cut(s) 50
AjuI GAANNNNNNNTTGG 4 cut(s) 159, 191, 212, 244
AluBI AGCT 2 cut(s) 516, 591
AluI AGCT 2 cut(s) 516, 591
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 2 cut(s) 209, 222
AlwNI CAGNNNCTG 1 cut(s) 242
AoxI GGCC 1 cut(s) 606
ApeKI GCWGC 1 cut(s) 588
ApoI RAATTY 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 81
AsuHPI GGTGA 3 cut(s) 328, 454, 568
BalI TGGCCA 1 cut(s) 608
BamHI GGATCC 1 cut(s) 214
BbvI GCAGC 1 cut(s) 600
BccI CCATC 2 cut(s) 293, 574
BciT130I CCWGG 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 49
BfaI CTAG 3 cut(s) 62, 111, 179
BisI GCNGC 1 cut(s) 589
BlsI GCNGC 1 cut(s) 590
BmcAI AGTACT 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 52
BmiI GGNNCC 2 cut(s) 49, 216
BmrFI CCNGG 1 cut(s) 52
BmrI ACTGGG 1 cut(s) 340
BmuI ACTGGG 1 cut(s) 340
BplI GAGNNNNNCTC 2 cut(s) 476, 508
BpmI CTGGAG 1 cut(s) 34
BpuEI CTTGAG 2 cut(s) 113, 613
BsaBI GATNNNNATC 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 335
Bse8I GATNNNNATC 1 cut(s) 21
BseBI CCWGG 1 cut(s) 52
BseGI GGATG 1 cut(s) 385
BseJI GATNNNNATC 1 cut(s) 21
BseMII CTCAG 2 cut(s) 245, 507
BseNI ACTGG 1 cut(s) 335
BseXI GCAGC 1 cut(s) 600
BshFI GGCC 1 cut(s) 608
BsmAI GTCTC 1 cut(s) 49
BsnI GGCC 1 cut(s) 608
Bsp143I GATC 2 cut(s) 16, 214
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 608
BspCNI CTCAG 2 cut(s) 246, 506
BspLI GGNNCC 2 cut(s) 49, 216
BspPI GGATC 2 cut(s) 209, 222
BspQI GCTCTTC 2 cut(s) 425, 506
BsrI ACTGG 1 cut(s) 335
BssMI GATC 2 cut(s) 16, 214
BssNI GRCGYC 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 52
Bst4CI ACNGT 5 cut(s) 137, 244, 298, 388, 448
Bst6I CTCTTC 2 cut(s) 425, 506
BstACI GRCGYC 1 cut(s) 269
BstDEI CTNAG 2 cut(s) 254, 493
BstF5I GGATG 1 cut(s) 385
BstKTI GATC 2 cut(s) 19, 217
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 2 cut(s) 16, 214
BstNI CCWGG 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 600
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 1 cut(s) 608
BtsCI GGATG 1 cut(s) 385
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 3 cut(s) 240, 487, 637
CaiI CAGNNNCTG 1 cut(s) 242
Csp6I GTAC 1 cut(s) 133
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 2 cut(s) 292, 544
CviJI RGCY 8 cut(s) 48, 104, 127, 239, 264, 516, 591, 608
CviKI_1 RGCY 8 cut(s) 48, 104, 127, 239, 264, 516, 591, 608
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 254, 493
DpnI GATC 2 cut(s) 18, 216
DpnII GATC 2 cut(s) 16, 214
DraI TTTAAA 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 606
Eam1104I CTCTTC 2 cut(s) 425, 506
EarI CTCTTC 2 cut(s) 425, 506
EciI GGCGGA 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 50
FaeI CATG 2 cut(s) 295, 547
FaiI YATR 6 cut(s) 293, 348, 375, 519, 545, 554
FatI CATG 2 cut(s) 291, 543
FblI GTMKAC 1 cut(s) 272
Fnu4HI GCNGC 1 cut(s) 589
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 1 cut(s) 589
FspBI CTAG 3 cut(s) 62, 111, 179
GluI GCNGC 1 cut(s) 589
GsuI CTGGAG 1 cut(s) 34
HaeIII GGCC 1 cut(s) 608
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 2 cut(s) 295, 547
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HinfI GANTC 5 cut(s) 88, 233, 250, 301, 322
HphI GGTGA 3 cut(s) 328, 454, 568
Hpy166II GTNNAC 2 cut(s) 273, 541
Hpy188I TCNGA 4 cut(s) 87, 219, 255, 327
Hpy8I GTNNAC 2 cut(s) 273, 541
HpyAV CCTTC 4 cut(s) 117, 433, 464, 529
HpyCH4III ACNGT 5 cut(s) 137, 244, 298, 388, 448
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 3 cut(s) 146, 152, 588
HpyF3I CTNAG 2 cut(s) 254, 493
HpySE526I ACGT 1 cut(s) 269
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 2 cut(s) 295, 547
Kzo9I GATC 2 cut(s) 16, 214
LguI GCTCTTC 2 cut(s) 425, 506
LmnI GCTCC 2 cut(s) 53, 168
LpnPI CCDG 6 cut(s) 37, 64, 299, 316, 480, 626
Lsp1109I GCAGC 1 cut(s) 600
MaeI CTAG 3 cut(s) 62, 111, 179
MaeII ACGT 1 cut(s) 269
MaeIII GTNAC 2 cut(s) 382, 442
MalI GATC 2 cut(s) 18, 216
MboI GATC 2 cut(s) 16, 214
MfeI CAATTG 2 cut(s) 147, 631
MflI RGATCY 1 cut(s) 214
MlsI TGGCCA 1 cut(s) 608
MluCI AATT 7 cut(s) 80, 147, 309, 402, 417, 618, 631
MluNI TGGCCA 1 cut(s) 608
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 7 cut(s) 107, 203, 289, 329, 420, 451, 616
Mox20I TGGCCA 1 cut(s) 608
MroXI GAANNNNTTC 1 cut(s) 81
MscI TGGCCA 1 cut(s) 608
MseI TTAA 4 cut(s) 32, 210, 420, 489
MslI CAYNNNNRTG 2 cut(s) 290, 296
Msp20I TGGCCA 1 cut(s) 608
MspR9I CCNGG 1 cut(s) 52
MunI CAATTG 2 cut(s) 147, 631
MvaI CCWGG 1 cut(s) 52
NdeII GATC 2 cut(s) 16, 214
NlaIII CATG 2 cut(s) 295, 547
NlaIV GGNNCC 2 cut(s) 49, 216
NmuCI GTSAC 1 cut(s) 442
PciSI GCTCTTC 2 cut(s) 425, 506
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 5 cut(s) 88, 233, 250, 301, 322
PfoI TCCNGGA 1 cut(s) 50
PkrI GCNGC 1 cut(s) 590
Psp6I CCWGG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 50
PspN4I GGNNCC 2 cut(s) 49, 216
PstNI CAGNNNCTG 1 cut(s) 242
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 2 cut(s) 290, 296
SapI GCTCTTC 2 cut(s) 425, 506
SaqAI TTAA 4 cut(s) 32, 210, 420, 489
SatI GCNGC 1 cut(s) 589
Sau3AI GATC 2 cut(s) 16, 214
ScaI AGTACT 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 52
SetI ASST 7 cut(s) 184, 272, 444, 462, 518, 540, 593
SmiI ATTTAAAT 1 cut(s) 33
SmiMI CAYNNNNRTG 2 cut(s) 290, 296
SmlI CTYRAG 2 cut(s) 128, 592
SmoI CTYRAG 2 cut(s) 128, 592
Sse9I AATT 7 cut(s) 80, 147, 309, 402, 417, 618, 631
SsiI CCGC 1 cut(s) 5
SspMI CTAG 3 cut(s) 62, 111, 179
StyD4I CCNGG 1 cut(s) 50
SwaI ATTTAAAT 1 cut(s) 33
TaaI ACNGT 5 cut(s) 137, 244, 298, 388, 448
TaiI ACGT 1 cut(s) 272
TasI AATT 7 cut(s) 80, 147, 309, 402, 417, 618, 631
TatI WGTACW 1 cut(s) 132
TfiI GAWTC 5 cut(s) 88, 233, 250, 301, 322
Tru1I TTAA 4 cut(s) 32, 210, 420, 489
Tru9I TTAA 4 cut(s) 32, 210, 420, 489
TscAI CASTG 2 cut(s) 247, 487
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 1 cut(s) 588
Tsp45I GTSAC 1 cut(s) 442
TspRI CASTG 2 cut(s) 247, 487
XapI RAATTY 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 272
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 3 cut(s) 62, 111, 179
ZraI GACGTC 1 cut(s) 270
ZrmI AGTACT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.